CmoCh20G006450 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G006450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich RNA-binding protein 4, mitochondrial-like
Location	Cmo_Chr20: 3163861 .. 3165373 (-)
RNA-Seq Expression	CmoCh20G006450
Synteny	CmoCh20G006450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGCAACGCGAACGCCTTGATGCTGCTTGCCAGAAGAGCACTCACCAATATTCAAACCCCAGTTCTGAGCTTTCGTTGCTTCTGTTCTCAATCCTCCTCCTCCTACTCCTCAGCTCCCTCGTCTTCTCCTTCTGCGCCAAACAACAAGCTCTTTGTTGCAGGTTCGTTTCTCTTTCGCAATCCCGTCCCACAGATGCTGCCCCAACATGATTCAAATGGTTTATGCATTGAATTTGATCTTGTTTTTTTCCTGCCGCTTCCAGGTTTGTCTTGGTCATTGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGGTAATCGTGAATGTTGAGTTTAAGCCTTTGATGTATGAGTTGTAGTCTACATGTTCGACGAAATGTCTAGTCGACTTCAGACCTCAGTTCATGATGTTTGCTTCTGGGTCGAAGCTTTTTGCTTCAATTCCATTCATAATTCCAATGATTTTTTAGGAAAAAAGTTGTTTCATTGAAGTTTCCTGTTTTACTATGCTTCTATGATTTTCTTGGGATATTGAGACAGCAAGACAATGAGAAATTTAGAGATTGAAAATTCTGCATGAAGAACTGTGAAGTACAACGAATTTGAGAGGTGGGAAATTAAAATTTATGTTTGAGCTGAAAGAAATTTGATGGCCATTGGTGATCACTCTGGAACTTCTCCAGCAAAATAGCTTATGGACATGGAGTTCATTTGATTTAGTTTAGATGAAATTGAATGGTCGCTGTGAAAAATCAATGGTGATCATTGTAGAAACCTTGATGCCCATTGGCTATCACTCTGAAACTTCTCCAGAAATTAGCCTATGGAATGCACTTGATATAGTTAGGATGAAATTCAATGGCCACTGAGAAACTTCAGTAATCGTCTCTAAAGGAACTTTGATATCCATTGTTGATCACTCTGAAACTGCATCAGCAAATTGCTTATTAGTTGAGTTCAAGCATGTTGGATAGTGATTTGAAATGCTTAAATTCATTGTTCTAGAGTTTGCTTTTAATCATTCAAAATCAATTTTGATAGCATAAAACTTATGTTGAATGATAAAAACGTGTTTATGGGTGATTTTGAACATGAAAAATTATAGTTCAACCATTTCAAGATCACTCTCTAACACGCCCTTTTTCTGTTAAGATTTGAATGCTTATATATACTCTCTTGACAGTTAGGATAATGTACGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCAAGTCACTATTTAATAAGAAGTTGTTTGACAATGTTTAATCTAACATCCTAAATTAGTCAAAATGATAGTCATCCCATCACTTTCAGGCACTATTAGGGCGGCCATTACGAATAAGCTTTGCCCTCGACAAGGTTCGTGGAGGACCTGTTGTCATTCCTCGACTTTCCAACATCAACATGTTTGGCCGAAGATCTTGA

mRNA sequence

ATGATGAGCAACGCGAACGCCTTGATGCTGCTTGCCAGAAGAGCACTCACCAATATTCAAACCCCAGTTCTGAGCTTTCGTTGCTTCTGTTCTCAATCCTCCTCCTCCTACTCCTCAGCTCCCTCGTCTTCTCCTTCTGCGCCAAACAACAAGCTCTTTGTTGCAGGTTTGTCTTGGTCATTGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAATGTACGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCACTATTAGGGCGGCCATTACGAATAAGCTTTGCCCTCGACAAGGTTCGTGGAGGACCTGTTGTCATTCCTCGACTTTCCAACATCAACATGTTTGGCCGAAGATCTTGA

Coding sequence (CDS)

ATGATGAGCAACGCGAACGCCTTGATGCTGCTTGCCAGAAGAGCACTCACCAATATTCAAACCCCAGTTCTGAGCTTTCGTTGCTTCTGTTCTCAATCCTCCTCCTCCTACTCCTCAGCTCCCTCGTCTTCTCCTTCTGCGCCAAACAACAAGCTCTTTGTTGCAGGTTTGTCTTGGTCATTGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAATGTACGATAAAGACTCAGGTCGATCCAGAGGCTTCGGATTTGTGAACTTCACAAATGAAGACGATGCACAAACTGCAAAAGATGCAATGGATGGAAAGGCACTATTAGGGCGGCCATTACGAATAAGCTTTGCCCTCGACAAGGTTCGTGGAGGACCTGTTGTCATTCCTCGACTTTCCAACATCAACATGTTTGGCCGAAGATCTTGA

Protein sequence

MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPLRISFALDKVRGGPVVIPRLSNINMFGRRS

Homology

[Close]

BLAST of CmoCh20G006450 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.1e-19
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 31  SQSSSSYSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRS 90
           SQSS+   ++   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 91  RGFGFVNFTNEDDAQTAKDAMDGKALLGRPLRISFALDK 130
           RGFGFV+F+ ED A  A   MDGK L GR +R++ A ++
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of CmoCh20G006450 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 39/85 (45.88%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 49  NNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAK 108
           ++KLF+ G+++S+DE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+ + A +A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 109 DAMDGKALLGRPLRISFALDKVRGG 134
            A+DG+ L GR +++++A D+  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of CmoCh20G006450 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.6e-17
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 32  QSSSSYSSAPSSSPSAP----NNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDS 91
           Q+ SS  + P +S        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++
Sbjct: 13  QNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET 72

Query: 92  GRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPLRISFALDK 130
           GRSRGFGFVNF +E  A  A   MDGK L GR +R++ A D+
Sbjct: 73  GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of CmoCh20G006450 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 8.6e-17
Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 46  SAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQ 105
           S+   KLFV GL+++ DER+L+D FSSFG ++EV ++ D+++ RSRGFGF+ FTN + A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 106 TAKDAMDGKALLGRPLRISFALDKVRG 133
            A  AM+G++L GR +R+  A    RG
Sbjct: 62  NAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of CmoCh20G006450 vs. ExPASy Swiss-Prot
Match: P98179 (RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-16
Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 46  SAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQ 105
           S+   KLFV GL+++ DE++L+D FSSFG ++EV ++ D+++ RSRGFGF+ FTN + A 
Sbjct: 2   SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 106 TAKDAMDGKALLGRPLRISFALDKVRG 133
            A  AM+G++L GR +R+  A    RG
Sbjct: 62  VAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of CmoCh20G006450 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.5e-75
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60
           MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120
           LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVIPRLSNINMFGRRS 151
           LRISFALDKVRGGPVVIPRLSNINMFGRRS
Sbjct: 121 LRISFALDKVRGGPVVIPRLSNINMFGRRS 150

[Close]

BLAST of CmoCh20G006450 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60
           MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120
           LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVIPRLSNI-NMFGRRS 151
           LRISFALDKVRGGPVV+PRLSNI N+ GRRS
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of CmoCh20G006450 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.5e-60
Identity = 124/151 (82.12%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60
           MMSN N L+LLAR+ALTNIQTP+L+FRCFCSQS    +SA SSSPSAP+NKLFVAGLSWS
Sbjct: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWS 77

Query: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NE+DAQ AKDAMDGKA+LGRP
Sbjct: 78  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRP 137

Query: 121 LRISFALDKVRGGPVVIPRLSNI-NMFGRRS 151
           L+ISFAL+KVRGGPV +PRLSNI N+ GRRS
Sbjct: 138 LKISFALEKVRGGPVAVPRLSNINNLVGRRS 164

[Close]

BLAST of CmoCh20G006450 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.0e-57
Identity = 121/149 (81.21%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 2   MSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSL 61
           MSN N  +LLAR+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSM 60

Query: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121
           DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N +DAQ AKDAMDGKA+LGRPL
Sbjct: 61  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPL 120

Query: 122 RISFALDKVRGGPVVIPRLSNI-NMFGRR 150
           RISFALDKVRG PVV+PRLSNI N+ GRR
Sbjct: 121 RISFALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of CmoCh20G006450 vs. ExPASy TrEMBL
Match: A0A5D3CH06 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00050 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 122/151 (80.79%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60
           MMSN N L+LLAR+ALTNIQTP+L+FRCFCSQS    +SA SSSPSAP+NKLFVAGLSWS
Sbjct: 1   MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWS 60

Query: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NE+DAQ AKDAMDGKA   RP
Sbjct: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKA--RRP 120

Query: 121 LRISFALDKVRGGPVVIPRLSNI-NMFGRRS 151
           L+ISFAL+KVRGGPV +PRLSNI N+ GRRS
Sbjct: 121 LKISFALEKVRGGPVAVPRLSNINNLVGRRS 145

[Close]

BLAST of CmoCh20G006450 vs. NCBI nr
Match: XP_022944150.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60
           MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120
           LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVIPRLSNINMFGRRS 151
           LRISFALDKVRGGPVVIPRLSNINMFGRRS
Sbjct: 121 LRISFALDKVRGGPVVIPRLSNINMFGRRS 150

[Close]

BLAST of CmoCh20G006450 vs. NCBI nr
Match: KAG6570903.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.2 bits (718), Expect = 5.3e-72
Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60
           MMSNAN LM LARRALTNIQTPVLSFRCFCSQSSSS SSAPSSSPSAPNNKLFVAGLSWS
Sbjct: 1   MMSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120
           LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVIPRLSNINMFGRRS 151
           LRISFALDKVRGGPVVIPRLSNIN+FGRRS
Sbjct: 121 LRISFALDKVRGGPVVIPRLSNINVFGRRS 150

[Close]

BLAST of CmoCh20G006450 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 281.2 bits (718), Expect = 5.3e-72
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60
           MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120
           LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVIPRLSNI-NMFGRRS 151
           LRISFALDKVRGGPVV+PRLSNI N+ GRRS
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of CmoCh20G006450 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 7.2e-69
Identity = 142/151 (94.04%), Postives = 145/151 (96.03%), Query Frame = 0


Query: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60
           MMSN N LM L RRALTNIQTPVLSFRCFCSQSSSS SSAPSSSPSAPNNKLFVAGLSWS
Sbjct: 1   MMSNTNTLMPLFRRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120
           LDERSLKDAFSS+GEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSYGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVIPRLSNI-NMFGRRS 151
           LRISFALDKVRGGPVV+PRLSNI N+FGRRS
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVFGRRS 151

[Close]

BLAST of CmoCh20G006450 vs. NCBI nr
Match: KAG7010748.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 142/149 (95.30%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 2   MSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSL 61
           MSNAN LM LARRALTNIQTPVLSFRCFCSQSSSS SSAPSSSPSAPNNKLFVAGLSWSL
Sbjct: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60

Query: 62  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPL 121
           DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA   RPL
Sbjct: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKA--RRPL 120

Query: 122 RISFALDKVRGGPVVIPRLSNINMFGRRS 151
           RISFALDKVRGGPVVIPRLSNIN+FGRRS
Sbjct: 121 RISFALDKVRGGPVVIPRLSNINVFGRRS 147

[Close]

BLAST of CmoCh20G006450 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-38
Identity = 87/135 (64.44%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 6   NALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWSLDERS 65
           N + LL RR     Q  + S   F  Q  +S S++PSS       KLF+ GLSWS+DE+S
Sbjct: 4   NGIELLVRRVSAIPQHSISSSFHFLPQFCTSSSASPSS-------KLFIGGLSWSVDEQS 63

Query: 66  LKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPLRISF 125
           LKDAFSSFGEV EVRI YDK SGRSRGFGFV+F  E DA +AKDAMDGK LLGRPLRISF
Sbjct: 64  LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISF 123

Query: 126 ALDKVRGGPVVIPRL 141
           AL++VRGGPVV+PRL
Sbjct: 124 ALERVRGGPVVVPRL 131

[Close]

BLAST of CmoCh20G006450 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-20
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 31  SQSSSSYSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRS 90
           SQSS+   ++   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 91  RGFGFVNFTNEDDAQTAKDAMDGKALLGRPLRISFALDK 130
           RGFGFV+F+ ED A  A   MDGK L GR +R++ A ++
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of CmoCh20G006450 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-20
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 31  SQSSSSYSSAPSSSPSAPNNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRS 90
           SQSS+   ++   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 91  RGFGFVNFTNEDDAQTAKDAMDGKALLGRPLRISFALDK 130
           RGFGFV+F+ ED A  A   MDGK L GR +R++ A ++
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of CmoCh20G006450 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-19
Identity = 39/85 (45.88%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 49  NNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAK 108
           ++KLF+ G+++S+DE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+ + A +A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 109 DAMDGKALLGRPLRISFALDKVRGG 134
            A+DG+ L GR +++++A D+  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of CmoCh20G006450 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-19
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 32  QSSSSYSSAPSSSPSAP----NNKLFVAGLSWSLDERSLKDAFSSFGEVTEVRIMYDKDS 91
           Q+ SS  + P +S        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++
Sbjct: 13  QNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET 72

Query: 92  GRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRPLRISFALDKVRGG 134
           GRSRGFGFVNF +E  A  A   MDGK L GR +R++ A D+  GG
Sbjct: 73  GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSGG 118

The following BLAST results are available for this feature:

BLAST of CmoCh20G006450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIS2	4.1e-19	50.51	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9FNR1	1.6e-18	45.88	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	8.6e-17	45.10	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
W8E7I1	8.6e-17	48.28	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]
P98179	2.5e-16	47.13	RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1	[more]

BLAST of CmoCh20G006450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYH8	5.5e-75	100.00	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1J7F1	2.6e-72	97.35	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A1S3C2R4	8.5e-60	82.12	glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0LQB7	3.0e-57	81.21	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV...	[more]
A0A5D3CH06	1.2e-56	80.79	Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CmoCh20G006450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944150.1	1.1e-74	100.00	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]	[more]
KAG6570903.1	5.3e-72	97.33	Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_022986397.1	5.3e-72	97.35	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
XP_023512965.1	7.2e-69	94.04	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
KAG7010748.1	3.5e-68	95.30	Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper...	[more]

BLAST of CmoCh20G006450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08000.1	1.1e-38	64.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	2.9e-20	50.51	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	2.9e-20	50.51	glycine-rich RNA-binding protein 4	[more]
AT5G61030.1	1.1e-19	45.88	glycine-rich RNA-binding protein 3	[more]
AT4G13850.4	5.5e-19	45.28	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 51..124 e-value: 1.4E-29 score: 114.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 52..122 e-value: 1.7E-22 score: 79.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 50..128 score: 21.343866
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 30..131 e-value: 1.7E-33 score: 117.8
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 7..144
None	No IPR available	PANTHER	PTHR15241:SF334	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL	coord: 7..144
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 36..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G006450.1	CmoCh20G006450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding