CmoCh20G006270 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G006270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Autophagy-related protein
Location	Cmo_Chr20: 3083429 .. 3085607 (+)
RNA-Seq Expression	CmoCh20G006270
Synteny	CmoCh20G006270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGTGTTCGGGGCTGGGTAGATATTCATTGCATATATTCAACTTGAAAACGATTTTTCTCATTCTGTCTTGATTTCATTCATCACAGAGCGTCTCTCGGTGTCTTTTCATTTGGTACTCAATAATTCGATTCCGTTGCCACGCCGATTTCGAAAACCCCTGTGCTCCTTCTTTATTCCTTTGATTATCTTTTGGCTGCAGGAGGCTTTTCATTCGATGGCAAAAAGCTCGTTTAAGTTGGAGCATCCCCTGGGTTAGTTTTTTCTTTTCTTACGCAAATCGAGGGTCGTATTTTGTGGTTTCTGTCAAATCTTTTGAGGGATTTTTCGTAGTTTTGAACACGCAGTTCGATTTCATCGCTTGATTCATTTAATTCCTCATACGCTATAGTCGAAATGATTGGGTTTATCCTTTTGTTTCTTGTAATTATGGATTCACCGAATGGTTGAGTTCTGATCGGGATGTTTGGTTATGTAAGGATCAATCTGTGTTCTGGTGTGGGTCTGTAGTATCAATCTGTGTTCTCTTTCATTGATAATTAGGAGAGGCGTAATGTTTTATATATATTCTTAACCCTTCCCATTACATGTGGGTTTGTATATTAATTTGATTGATGAGATTCAAACCCAAATACTTATGTTTCATGATGAACAACAAAAGATTAAAACAATTGATCAAGCTGTATGAGGGAGTTTTTTATAGAATGTTTATTATAATCTACCAGATCAAATGGAAATAACCTTGGCCTGATATTCATACTCTCGAATAAACTCTAGAGAAGATAAGAAATTAACTTGAAATTTGAATTGACATTATGAACATTCCAGAAAGAAGGCAGGTTGAATCTGCTAGGATCCGAGAGAAGTATCCTGACAGAATTCCGGTATGATATTTGTAATTTATGAATGCTTGCAATTGTTTGAGTGTTCTTGTAATACGTACTTGTTTTAATGTCTGTCGGTTAACTGGTTTAGGTGATTGTGGAAAGGGCTGAAAAGAGTGATGTTCCAGAAATTGATAAGAAAAAGTAAGTTGCTCTCCGTTTTCTTACTAGCTGACGTTTCGATTTTATTTAGGATTAACTTGTTACTTTGATGTGCTTTCCAAATCTATAAGTATCTTTCAAATGGGAAGTAAAACGAGCGAATTTTGTGAATGCTGAAATGCTGTTCTTTATAGTGTTCTAGATTGATGGTGACGTATGAATGTTTTCAGTATTGCGAATGTTTTTCGAGGTTTAGTGTTTCTCGAGCGTTGGTCACTAGACCATTTTGTAACTATGACATTCATCTAGTTGTTTTGGAACGGAGTTCTTTTTGTAGTTAGTATTGAACTCTTGCTTTTCTGAGGCTTGTTTCTTGTACGCCCTTGTATTGCTTCATTTTTTCTATGGAAGTTTGGTTTGTTATCCATAAAGAATAGGTCTTTCAAGTGTTGTATGGCTTGTCTTATTGAGTCGGAGGTCAATATGAAGTTATTATATTGTTGTTTGTACTTTTGAACGTTTTCTTGGGTTAACGATGTTCTAGCTATTTTAATCTCCGTATCACGTTCAAAGGAATCAAATGTAACCACATTGAGATTGAATGGAATATCAATATGTTCAAAACAATGTTGGCTAGTGGGGGCTAGTGGGGGACGTGGATTGATAGATCTCTATTTTTGTTTCGAGTAGCGAAGATGACTATAGATTGTGTAGTAGAAGAACGATGCTGTTTGAGGGTCTAAAAGCGATGTTTCTGAACCTGAAAATGGATAATATCGAGAAGCGTTGCAAGGATTTGATAACTAGATGAGCTATCGGTGCAGAAAACCGTTAATGTTATCTATAGGAAAGTTATGTTACTGTCTTTATTGATTGCAGATATTTAGTCCCTGCTGATTTAACTGTGGGTCAGTTCGTGTACGTGGTCCGAAAGAGGATCAAGCTCAGCCCTGAGAAGGCCATCTTCATTTTTGTGAAGAATATTTTGCCCCCTACCGGTGAGAACTTGTACTTTGGGAATGTGTTCTTATCATATTTTGTGCATAATCTTCACATTTATCATTTTTCTGGTTCTGAACGTTTGTTCGGTCGGTCTGCAGCTGCTATGATGTCTGCAATTTACGAGGAAAACAAGGATGAAGATGGTTTCCTGTATATGACCTACAGCGGGGAAAACACGTTCGGGGCGTGCTGA

mRNA sequence

CGGTGTTCGGGGCTGGGTAGATATTCATTGCATATATTCAACTTGAAAACGATTTTTCTCATTCTGTCTTGATTTCATTCATCACAGAGCGTCTCTCGGTGTCTTTTCATTTGGAGGCTTTTCATTCGATGGCAAAAAGCTCGTTTAAGTTGGAGCATCCCCTGGAAAGAAGGCAGGTTGAATCTGCTAGGATCCGAGAGAAGTATCCTGACAGAATTCCGGTGATTGTGGAAAGGGCTGAAAAGAGTGATGTTCCAGAAATTGATAAGAAAAAATATTTAGTCCCTGCTGATTTAACTGTGGGTCAGTTCGTGTACGTGGTCCGAAAGAGGATCAAGCTCAGCCCTGAGAAGGCCATCTTCATTTTTGTGAAGAATATTTTGCCCCCTACCGGTGAGAACTTGTACTTTGGGAATGTGTTCTTATCATATTTTGTGCATAATCTTCACATTTATCATTTTTCTGGTTCTGAACGTTTGTTCGGTCGGTCTGCAGCTGCTATGATGTCTGCAATTTACGAGGAAAACAAGGATGAAGATGGTTTCCTGTATATGACCTACAGCGGGGAAAACACGTTCGGGGCGTGCTGA

Coding sequence (CDS)

ATGGCAAAAAGCTCGTTTAAGTTGGAGCATCCCCTGGAAAGAAGGCAGGTTGAATCTGCTAGGATCCGAGAGAAGTATCCTGACAGAATTCCGGTGATTGTGGAAAGGGCTGAAAAGAGTGATGTTCCAGAAATTGATAAGAAAAAATATTTAGTCCCTGCTGATTTAACTGTGGGTCAGTTCGTGTACGTGGTCCGAAAGAGGATCAAGCTCAGCCCTGAGAAGGCCATCTTCATTTTTGTGAAGAATATTTTGCCCCCTACCGGTGAGAACTTGTACTTTGGGAATGTGTTCTTATCATATTTTGTGCATAATCTTCACATTTATCATTTTTCTGGTTCTGAACGTTTGTTCGGTCGGTCTGCAGCTGCTATGATGTCTGCAATTTACGAGGAAAACAAGGATGAAGATGGTTTCCTGTATATGACCTACAGCGGGGAAAACACGTTCGGGGCGTGCTGA

Protein sequence

MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGRSAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC

Homology

[Close]

BLAST of CmoCh20G006270 vs. ExPASy Swiss-Prot
Match: M1C146 (Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.1e-51
Identity = 109/152 (71.71%), Postives = 116/152 (76.32%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQ E+ARIREKYPDRIPVIVE+AE+SD+P+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLS EKAIFIFVKNILPPT                                
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNILPPT-------------------------------- 118

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGA 153
             AAMMSAIYEE+KDEDGFLYMTYSGENTFG+
Sbjct: 121 --AAMMSAIYEEHKDEDGFLYMTYSGENTFGS 118

[Close]

BLAST of CmoCh20G006270 vs. ExPASy Swiss-Prot
Match: Q8S927 (Autophagy-related protein 8c OS=Arabidopsis thaliana OX=3702 GN=ATG8C PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.7e-50
Identity = 108/151 (71.52%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA SSFKLEHPLERRQ+ES+RIREKYPDRIPVIVERAE+SDVP IDKKKYLVPADLTVGQ
Sbjct: 1   MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLS EKAIF+FVKN LPPT                                
Sbjct: 61  FVYVVRKRIKLSAEKAIFVFVKNTLPPT-------------------------------- 117

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFG 152
             AAMMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 121 --AAMMSAIYDENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CmoCh20G006270 vs. ExPASy Swiss-Prot
Match: Q2XPP5 (Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.9e-50
Identity = 106/152 (69.74%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA++SFKLEHPLERRQ ESARIREKY DRIPVIVE+A+K+DVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIF+FVKN LPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFVFVKNTLPPT-------------------------------- 118

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGA 153
             A++MSAIYEENKDEDGFLYMTYSGENTFG+
Sbjct: 121 --ASLMSAIYEENKDEDGFLYMTYSGENTFGS 118

[Close]

BLAST of CmoCh20G006270 vs. ExPASy Swiss-Prot
Match: Q69RC4 (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8A PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.9e-50
Identity = 106/152 (69.74%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA++SFKLEHPLERRQ ESARIREKY DRIPVIVE+A+K+DVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIF+FVKN LPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFVFVKNTLPPT-------------------------------- 118

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGA 153
             A++MSAIYEENKDEDGFLYMTYSGENTFG+
Sbjct: 121 --ASLMSAIYEENKDEDGFLYMTYSGENTFGS 118

[Close]

BLAST of CmoCh20G006270 vs. ExPASy Swiss-Prot
Match: A2YS06 (Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=3 SV=2)

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-49
Identity = 106/151 (70.20%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA+SSFKLEHPLERRQ E+ RIREKYPDRIPVIVE+AE+SD+P+IDKKKYLVPADLTVGQ
Sbjct: 1   MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLS EKAIFIFVKN LPPT                                
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNTLPPT-------------------------------- 117

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFG 152
             AA+MSAIYEENKDEDGFLYMTYSGENTFG
Sbjct: 121 --AALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CmoCh20G006270 vs. ExPASy TrEMBL
Match: A0A6J1FV37 (Autophagy-related protein OS=Cucurbita moschata OX=3662 GN=LOC111448369 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.7e-53
Identity = 119/153 (77.78%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 119

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 154
             AAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 121 --AAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CmoCh20G006270 vs. ExPASy TrEMBL
Match: A0A5A7V165 (Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00050 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.7e-53
Identity = 119/153 (77.78%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 7   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 66

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 67  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 125

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 154
             AAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 127 --AAMMSAIYEENKDEDGFLYMTYSGENTFGAC 125

[Close]

BLAST of CmoCh20G006270 vs. ExPASy TrEMBL
Match: A0A6J1JFZ0 (Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111484151 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.7e-53
Identity = 119/153 (77.78%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 119

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 154
             AAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 121 --AAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CmoCh20G006270 vs. ExPASy TrEMBL
Match: A0A0A0LN58 (Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G418350 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.7e-53
Identity = 119/153 (77.78%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 119

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 154
             AAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 121 --AAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CmoCh20G006270 vs. ExPASy TrEMBL
Match: A0A1S3C2M9 (Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103495965 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.7e-53
Identity = 119/153 (77.78%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 119

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 154
             AAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 121 --AAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CmoCh20G006270 vs. NCBI nr
Match: KAA0059575.1 (Ubiquitin-like superfamily protein [Cucumis melo var. makuwa] >TYK24205.1 Ubiquitin-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 5.6e-53
Identity = 119/153 (77.78%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 7   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 66

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 67  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 125

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 154
             AAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 127 --AAMMSAIYEENKDEDGFLYMTYSGENTFGAC 125

[Close]

BLAST of CmoCh20G006270 vs. NCBI nr
Match: KAG6570885.1 (NEDD8-activating enzyme E1 regulatory subunit AXR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.0 bits (554), Expect = 5.6e-53
Identity = 119/153 (77.78%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1    MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
            MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 988  MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 1047

Query: 61   FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
            FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 1048 FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 1106

Query: 121  SAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 154
              AAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 1108 --AAMMSAIYEENKDEDGFLYMTYSGENTFGAC 1106

[Close]

BLAST of CmoCh20G006270 vs. NCBI nr
Match: XP_004151892.1 (autophagy-related protein 8C-like [Cucumis sativus] >XP_008455886.1 PREDICTED: autophagy-related protein 8c [Cucumis melo] >XP_022943693.1 autophagy-related protein 8c [Cucurbita moschata] >XP_022943694.1 autophagy-related protein 8c [Cucurbita moschata] >XP_022986404.1 autophagy-related protein 8c [Cucurbita maxima] >XP_038902002.1 autophagy-related protein 8C-like isoform X1 [Benincasa hispida] >KGN63248.1 hypothetical protein Csa_022236 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 5.6e-53
Identity = 119/153 (77.78%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 119

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 154
             AAMMSAIYEENKDEDGFLYMTYSGENTFGAC
Sbjct: 121 --AAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119

[Close]

BLAST of CmoCh20G006270 vs. NCBI nr
Match: XP_023512507.1 (autophagy-related protein 8c [Cucurbita pepo subsp. pepo] >XP_023512508.1 autophagy-related protein 8c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-52
Identity = 118/153 (77.12%), Postives = 118/153 (77.12%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 119

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 154
             AAMMSAIYEENKDEDGFLYMTYSGENTFG C
Sbjct: 121 --AAMMSAIYEENKDEDGFLYMTYSGENTFGEC 119

[Close]

BLAST of CmoCh20G006270 vs. NCBI nr
Match: XP_022140546.1 (autophagy-related protein 8c [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 2.4e-51
Identity = 117/151 (77.48%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 117

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFG 152
             AAMMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct: 121 --AAMMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CmoCh20G006270 vs. TAIR 10
Match: AT1G62040.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-51
Identity = 108/151 (71.52%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA SSFKLEHPLERRQ+ES+RIREKYPDRIPVIVERAE+SDVP IDKKKYLVPADLTVGQ
Sbjct: 1   MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLS EKAIF+FVKN LPPT                                
Sbjct: 61  FVYVVRKRIKLSAEKAIFVFVKNTLPPT-------------------------------- 117

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFG 152
             AAMMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 121 --AAMMSAIYDENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CmoCh20G006270 vs. TAIR 10
Match: AT1G62040.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-51
Identity = 108/151 (71.52%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA SSFKLEHPLERRQ+ES+RIREKYPDRIPVIVERAE+SDVP IDKKKYLVPADLTVGQ
Sbjct: 15  MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQ 74

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLS EKAIF+FVKN LPPT                                
Sbjct: 75  FVYVVRKRIKLSAEKAIFVFVKNTLPPT-------------------------------- 131

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFG 152
             AAMMSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct: 135 --AAMMSAIYDENKDEDGFLYMTYSGENTFG 131

[Close]

BLAST of CmoCh20G006270 vs. TAIR 10
Match: AT2G05630.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-50
Identity = 107/151 (70.86%), Postives = 114/151 (75.50%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MA SSFK EHPLE+RQ E+ARIREKYPDRIPVIVERAEKSDVP+ID+KKYLVPADLTVGQ
Sbjct: 1   MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKLSPEKAIFIFVKNILPPT                                
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPT-------------------------------- 117

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFG 152
             AA+MSAIYEE+KDEDGFLYM+YSGENTFG
Sbjct: 121 --AAIMSAIYEEHKDEDGFLYMSYSGENTFG 117

[Close]

BLAST of CmoCh20G006270 vs. TAIR 10
Match: AT4G21980.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 100/152 (65.79%), Postives = 110/152 (72.37%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFK+ +PLE R  ES+RIREKYPDRIPVIVE+A +SDVP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQ 60

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKL  EKAIF+FVKN LPPT                                
Sbjct: 61  FVYVVRKRIKLGAEKAIFVFVKNTLPPT-------------------------------- 118

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGA 153
             AA+MSAIYEE+KDEDGFLYMTYSGENTFG+
Sbjct: 121 --AALMSAIYEEHKDEDGFLYMTYSGENTFGS 118

[Close]

BLAST of CmoCh20G006270 vs. TAIR 10
Match: AT4G21980.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 100/152 (65.79%), Postives = 110/152 (72.37%), Query Frame = 0


Query: 1   MAKSSFKLEHPLERRQVESARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
           MAKSSFK+ +PLE R  ES+RIREKYPDRIPVIVE+A +SDVP+IDKKKYLVPADLTVGQ
Sbjct: 16  MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQ 75

Query: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTGENLYFGNVFLSYFVHNLHIYHFSGSERLFGR 120
           FVYVVRKRIKL  EKAIF+FVKN LPPT                                
Sbjct: 76  FVYVVRKRIKLGAEKAIFVFVKNTLPPT-------------------------------- 133

Query: 121 SAAAMMSAIYEENKDEDGFLYMTYSGENTFGA 153
             AA+MSAIYEE+KDEDGFLYMTYSGENTFG+
Sbjct: 136 --AALMSAIYEEHKDEDGFLYMTYSGENTFGS 133

The following BLAST results are available for this feature:

BLAST of CmoCh20G006270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
M1C146	7.1e-51	71.71	Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV...	[more]
Q8S927	2.7e-50	71.52	Autophagy-related protein 8c OS=Arabidopsis thaliana OX=3702 GN=ATG8C PE=1 SV=1	[more]
Q2XPP5	7.9e-50	69.74	Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=...	[more]
Q69RC4	7.9e-50	69.74	Autophagy-related protein 8A OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8A P...	[more]
A2YS06	2.3e-49	70.20	Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=...	[more]

BLAST of CmoCh20G006270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FV37	2.7e-53	77.78	Autophagy-related protein OS=Cucurbita moschata OX=3662 GN=LOC111448369 PE=3 SV=...	[more]
A0A5A7V165	2.7e-53	77.78	Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1JFZ0	2.7e-53	77.78	Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111484151 PE=3 SV=1	[more]
A0A0A0LN58	2.7e-53	77.78	Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G418350 PE=3 SV=1	[more]
A0A1S3C2M9	2.7e-53	77.78	Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103495965 PE=3 SV=1	[more]

BLAST of CmoCh20G006270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059575.1	5.6e-53	77.78	Ubiquitin-like superfamily protein [Cucumis melo var. makuwa] >TYK24205.1 Ubiqui...	[more]
KAG6570885.1	5.6e-53	77.78	NEDD8-activating enzyme E1 regulatory subunit AXR1, partial [Cucurbita argyrospe...	[more]
XP_004151892.1	5.6e-53	77.78	autophagy-related protein 8C-like [Cucumis sativus] >XP_008455886.1 PREDICTED: a...	[more]
XP_023512507.1	2.1e-52	77.12	autophagy-related protein 8c [Cucurbita pepo subsp. pepo] >XP_023512508.1 autoph...	[more]
XP_022140546.1	2.4e-51	77.48	autophagy-related protein 8c [Momordica charantia]	[more]

BLAST of CmoCh20G006270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62040.1	1.9e-51	71.52	Ubiquitin-like superfamily protein	[more]
AT1G62040.2	1.9e-51	71.52	Ubiquitin-like superfamily protein	[more]
AT2G05630.1	2.8e-50	70.86	Ubiquitin-like superfamily protein	[more]
AT4G21980.1	1.4e-46	65.79	Ubiquitin-like superfamily protein	[more]
AT4G21980.2	1.4e-46	65.79	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 1..152 e-value: 3.7E-55 score: 187.2
None	No IPR available	PIRSR	PIRSR604241-50	PIRSR604241-50	coord: 3..119 e-value: 9.2E-36 score: 120.1
None	No IPR available	PANTHER	PTHR10969:SF77	AUTOPHAGY-RELATED PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR10969:SF77	AUTOPHAGY-RELATED PROTEIN	coord: 123..151
None	No IPR available	CDD	cd16128	Ubl_ATG8	coord: 12..148 e-value: 5.80694E-67 score: 196.913
IPR004241	Autophagy protein Atg8 ubiquitin-like	PFAM	PF02991	Atg8	coord: 122..151 e-value: 5.6E-10 score: 39.3 coord: 14..119 e-value: 2.5E-35 score: 120.8
IPR004241	Autophagy protein Atg8 ubiquitin-like	PANTHER	PTHR10969	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	coord: 123..151 coord: 1..89
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 3..103
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 118..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G006270.1	CmoCh20G006270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0006995	cellular response to nitrogen starvation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule