CmoCh20G005940 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G005940
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr20: 2931254 .. 2932027 (+)
RNA-Seq Expression	CmoCh20G005940
Synteny	CmoCh20G005940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACCGTCCTCGAGACAAAACCCACCACCACTTTGGCGGCCTATCTTGACCTTGAAGATGACGAAACAAGAATTTCTAAAATCGACCCATCCTGCCCCAGTTGTCGATGCTCCAGAAATTCCGGCCGAGACTGCTCCGCCATTTCTCGCCCACCAAAGCGAAATCTTTCTCGGACGGCCAGAGTCATCGTGTTTGGTACCATTCTGGTCAGTAGTGATTTGGTGTAGTTTAGTTGTTTTTTTAACTTTGTTCGTTTTTTTAGCACGTGGGTCTTTTTTGTTCCTCTGTTTTAGATCAAAAGAGTTCGTGAGAGAAGAAGCAACCACCAACAGAAATCTGACCGCCGGAAACGAAGTTCATCCCTGGATTCTGGAAGTTCTCCGGTAGGCGGAATTTACCAAAAAAACAGAGACAACCAACTAGTGGGAGTGGAGCCATCTGGGTCATCTCAGTCTTTTCCAATTTCAATATCTAAACCCAAAATTTCGGAAAAGAAAGCCAGTGGGAGTGGAACCATTGGTGCGAGGCAGGGGAGTTGCTATGCATTTAATTCCGGCATTGGTTTGCTATTAGTGAGTTTCGGAGTGACAGTGATGCAGGGGAGAGTGATTGCCATCTTAATCACATCAATTTGGGTATACTTTTTTGCTTGGATGCACATGGAGGATCGCTGGCTGAGGAAGAAACCGACAGAATTTGCAGAAACAGAGGTGAGGGACACTCTGAGGAGTGGCTGTCGGAACACAACCGGACCTCTGTTTCGTGTTTAA

mRNA sequence

ATGGGAACCGTCCTCGAGACAAAACCCACCACCACTTTGGCGGCCTATCTTGACCTTGAAGATGACGAAACAAGAATTTCTAAAATCGACCCATCCTGCCCCAGTTGTCGATGCTCCAGAAATTCCGGCCGAGACTGCTCCGCCATTTCTCGCCCACCAAAGCGAAATCTTTCTCGGACGGCCAGAGTCATCGTGTTTGGTACCATTCTGATCAAAAGAGTTCGTGAGAGAAGAAGCAACCACCAACAGAAATCTGACCGCCGGAAACGAAGTTCATCCCTGGATTCTGGAAGTTCTCCGGTAGGCGGAATTTACCAAAAAAACAGAGACAACCAACTAGTGGGAGTGGAGCCATCTGGGTCATCTCAGTCTTTTCCAATTTCAATATCTAAACCCAAAATTTCGGAAAAGAAAGCCAGTGGGAGTGGAACCATTGGTGCGAGGCAGGGGAGTTGCTATGCATTTAATTCCGGCATTGGTTTGCTATTAGTGAGTTTCGGAGTGACAGTGATGCAGGGGAGAGTGATTGCCATCTTAATCACATCAATTTGGGTATACTTTTTTGCTTGGATGCACATGGAGGATCGCTGGCTGAGGAAGAAACCGACAGAATTTGCAGAAACAGAGGTGAGGGACACTCTGAGGAGTGGCTGTCGGAACACAACCGGACCTCTGTTTCGTGTTTAA

Coding sequence (CDS)

ATGGGAACCGTCCTCGAGACAAAACCCACCACCACTTTGGCGGCCTATCTTGACCTTGAAGATGACGAAACAAGAATTTCTAAAATCGACCCATCCTGCCCCAGTTGTCGATGCTCCAGAAATTCCGGCCGAGACTGCTCCGCCATTTCTCGCCCACCAAAGCGAAATCTTTCTCGGACGGCCAGAGTCATCGTGTTTGGTACCATTCTGATCAAAAGAGTTCGTGAGAGAAGAAGCAACCACCAACAGAAATCTGACCGCCGGAAACGAAGTTCATCCCTGGATTCTGGAAGTTCTCCGGTAGGCGGAATTTACCAAAAAAACAGAGACAACCAACTAGTGGGAGTGGAGCCATCTGGGTCATCTCAGTCTTTTCCAATTTCAATATCTAAACCCAAAATTTCGGAAAAGAAAGCCAGTGGGAGTGGAACCATTGGTGCGAGGCAGGGGAGTTGCTATGCATTTAATTCCGGCATTGGTTTGCTATTAGTGAGTTTCGGAGTGACAGTGATGCAGGGGAGAGTGATTGCCATCTTAATCACATCAATTTGGGTATACTTTTTTGCTTGGATGCACATGGAGGATCGCTGGCTGAGGAAGAAACCGACAGAATTTGCAGAAACAGAGGTGAGGGACACTCTGAGGAGTGGCTGTCGGAACACAACCGGACCTCTGTTTCGTGTTTAA

Protein sequence

MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRTARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSGSSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILITSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV

Homology

[Close]

BLAST of CmoCh20G005940 vs. ExPASy TrEMBL
Match: A0A6J1FY81 (uncharacterized protein LOC111449019 OS=Cucurbita moschata OX=3662 GN=LOC111449019 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.7e-121
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60
           MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT
Sbjct: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60

Query: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120
           ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG
Sbjct: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120

Query: 121 SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180
           SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI
Sbjct: 121 SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180

Query: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 229
           TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV
Sbjct: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 228

[Close]

BLAST of CmoCh20G005940 vs. ExPASy TrEMBL
Match: A0A6J1JAX0 (uncharacterized protein LOC111484130 OS=Cucurbita maxima OX=3661 GN=LOC111484130 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 9.2e-114
Identity = 214/228 (93.86%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60
           MGTVLETKPTTTLAAYLDLEDDETRIS+IDPSCPSCRCSRNSGRDCSAISRPPKRNLSR 
Sbjct: 1   MGTVLETKPTTTLAAYLDLEDDETRISRIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRM 60

Query: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120
           AR IVFGTILIK+VRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG
Sbjct: 61  ARAIVFGTILIKKVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120

Query: 121 SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180
           SSQSFPISISKP+ISEKKA+GS TIG RQGSCYAFNSG+GLLLVS G TVMQGRVI ILI
Sbjct: 121 SSQSFPISISKPRISEKKANGSATIGVRQGSCYAFNSGVGLLLVSSGGTVMQGRVIGILI 180

Query: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 229
           TSIWVYFFAWMHMEDRWLRKKPTEFAETEVR TLRSGCRNT GPLFRV
Sbjct: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRGTLRSGCRNTIGPLFRV 228

[Close]

BLAST of CmoCh20G005940 vs. ExPASy TrEMBL
Match: A0A5D3B9T8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold464G00420 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 6.5e-51
Identity = 135/226 (59.73%), Postives = 152/226 (67.26%), Query Frame = 0


Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60
           MGTV  TKP TTLAA+LDLED +T+      SCP+CRCSRN     SAIS PPK  LSRT
Sbjct: 1   MGTVRHTKPPTTLAAFLDLEDQQTQ------SCPNCRCSRN-----SAISLPPKPALSRT 60

Query: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPV-----------GGIYQKNR 120
           AR IVFGTILIKRVRER+++ Q K D RKRS  LDS   PV            GIYQ+NR
Sbjct: 61  ARAIVFGTILIKRVRERKTHRQPKYDGRKRSLLLDSVRVPVKENRESVKRELDGIYQENR 120

Query: 121 DNQLVGVEPSGSSQSFPISISKPKISEKKAS-GSGTIGARQ-------GSCYAFNSGIGL 180
           +  L     SGS QSF ISIS+PKIS KK   G+  IG +Q        SCYAFNS + L
Sbjct: 121 EIPL----SSGSIQSFSISISEPKISNKKTGCGNEAIGVKQREVERSRRSCYAFNSSVRL 180

Query: 181 LLVSFGVTVMQGRVIAILITSIWVYFFAWMHMEDRWLRKKPTEFAE 208
           L+VS GVTVMQGRV+ ILITSI VYFFAWM MED WL+ K T+F E
Sbjct: 181 LMVSLGVTVMQGRVLGILITSISVYFFAWMQMEDCWLKNKATKFME 211

[Close]

BLAST of CmoCh20G005940 vs. ExPASy TrEMBL
Match: A0A1S3BK26 (uncharacterized protein LOC103490482 OS=Cucumis melo OX=3656 GN=LOC103490482 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 6.5e-51
Identity = 135/226 (59.73%), Postives = 152/226 (67.26%), Query Frame = 0


Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60
           MGTV  TKP TTLAA+LDLED +T+      SCP+CRCSRN     SAIS PPK  LSRT
Sbjct: 1   MGTVRHTKPPTTLAAFLDLEDQQTQ------SCPNCRCSRN-----SAISLPPKPALSRT 60

Query: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPV-----------GGIYQKNR 120
           AR IVFGTILIKRVRER+++ Q K D RKRS  LDS   PV            GIYQ+NR
Sbjct: 61  ARAIVFGTILIKRVRERKTHRQPKYDGRKRSLLLDSVRVPVKENRESVKRELDGIYQENR 120

Query: 121 DNQLVGVEPSGSSQSFPISISKPKISEKKAS-GSGTIGARQ-------GSCYAFNSGIGL 180
           +  L     SGS QSF ISIS+PKIS KK   G+  IG +Q        SCYAFNS + L
Sbjct: 121 EIPL----SSGSIQSFSISISEPKISNKKTGCGNEAIGVKQREVERSRRSCYAFNSSVRL 180

Query: 181 LLVSFGVTVMQGRVIAILITSIWVYFFAWMHMEDRWLRKKPTEFAE 208
           L+VS GVTVMQGRV+ ILITSI VYFFAWM MED WL+ K T+F E
Sbjct: 181 LMVSLGVTVMQGRVLGILITSISVYFFAWMQMEDCWLKNKATKFME 211

[Close]

BLAST of CmoCh20G005940 vs. ExPASy TrEMBL
Match: A0A5A7TYI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00310 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 3.2e-50
Identity = 136/227 (59.91%), Postives = 153/227 (67.40%), Query Frame = 0


Query: 1   MGTVLETKP-TTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSR 60
           MGTV  TKP TTTLAA+LDLED +T+      SCP+CRCSRN     SAIS PPK  LSR
Sbjct: 1   MGTVRHTKPTTTTLAAFLDLEDQQTQ------SCPNCRCSRN-----SAISLPPKPALSR 60

Query: 61  TARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPV-----------GGIYQKN 120
           TAR IVFGTILIKRVRER+++ Q K D RKRS  LDS   PV            GIYQ+N
Sbjct: 61  TARAIVFGTILIKRVRERKTHRQPKYDGRKRSLLLDSVRVPVKENRESVKRELDGIYQEN 120

Query: 121 RDNQLVGVEPSGSSQSFPISISKPKISEKKAS-GSGTIGARQ-------GSCYAFNSGIG 180
           R+  L     SGS QSF ISIS+PKIS KK   G+  IG +Q        SCYAFNS + 
Sbjct: 121 REIPL----SSGSIQSFSISISEPKISNKKTGCGNEAIGVKQREVERSRRSCYAFNSSVR 180

Query: 181 LLLVSFGVTVMQGRVIAILITSIWVYFFAWMHMEDRWLRKKPTEFAE 208
           LL+VS GVTVMQGRV+ ILITSI VYFFAWM MED WL+ K T+F E
Sbjct: 181 LLMVSLGVTVMQGRVLGILITSISVYFFAWMQMEDCWLKNKATKFME 212

[Close]

BLAST of CmoCh20G005940 vs. NCBI nr
Match: XP_022944613.1 (uncharacterized protein LOC111449019 [Cucurbita moschata])

HSP 1 Score: 444.5 bits (1142), Expect = 5.5e-121
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60
           MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT
Sbjct: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60

Query: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120
           ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG
Sbjct: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120

Query: 121 SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180
           SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI
Sbjct: 121 SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180

Query: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 229
           TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV
Sbjct: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 228

[Close]

BLAST of CmoCh20G005940 vs. NCBI nr
Match: KAG7010708.1 (hypothetical protein SDJN02_27504, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 441.8 bits (1135), Expect = 3.6e-120
Identity = 227/228 (99.56%), Postives = 227/228 (99.56%), Query Frame = 0


Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60
           MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT
Sbjct: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60

Query: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120
           ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIY KNRDNQLVGVEPSG
Sbjct: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYLKNRDNQLVGVEPSG 120

Query: 121 SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180
           SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI
Sbjct: 121 SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180

Query: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 229
           TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV
Sbjct: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 228

[Close]

BLAST of CmoCh20G005940 vs. NCBI nr
Match: KAG6570858.1 (hypothetical protein SDJN03_29773, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.5 bits (1116), Expect = 5.7e-118
Identity = 225/228 (98.68%), Postives = 225/228 (98.68%), Query Frame = 0


Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60
           MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT
Sbjct: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60

Query: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120
           ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIY KNRDNQLVGVEPSG
Sbjct: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYLKNRDNQLVGVEPSG 120

Query: 121 SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180
           SSQSFPISIS PKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI
Sbjct: 121 SSQSFPISISNPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180

Query: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 229
           TSIWVYFFA MHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV
Sbjct: 181 TSIWVYFFASMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 228

[Close]

BLAST of CmoCh20G005940 vs. NCBI nr
Match: XP_022986371.1 (uncharacterized protein LOC111484130 [Cucurbita maxima])

HSP 1 Score: 419.5 bits (1077), Expect = 1.9e-113
Identity = 214/228 (93.86%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60
           MGTVLETKPTTTLAAYLDLEDDETRIS+IDPSCPSCRCSRNSGRDCSAISRPPKRNLSR 
Sbjct: 1   MGTVLETKPTTTLAAYLDLEDDETRISRIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRM 60

Query: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120
           AR IVFGTILIK+VRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG
Sbjct: 61  ARAIVFGTILIKKVRERRSNHQQKSDRRKRSSSLDSGSSPVGGIYQKNRDNQLVGVEPSG 120

Query: 121 SSQSFPISISKPKISEKKASGSGTIGARQGSCYAFNSGIGLLLVSFGVTVMQGRVIAILI 180
           SSQSFPISISKP+ISEKKA+GS TIG RQGSCYAFNSG+GLLLVS G TVMQGRVI ILI
Sbjct: 121 SSQSFPISISKPRISEKKANGSATIGVRQGSCYAFNSGVGLLLVSSGGTVMQGRVIGILI 180

Query: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRDTLRSGCRNTTGPLFRV 229
           TSIWVYFFAWMHMEDRWLRKKPTEFAETEVR TLRSGCRNT GPLFRV
Sbjct: 181 TSIWVYFFAWMHMEDRWLRKKPTEFAETEVRGTLRSGCRNTIGPLFRV 228

[Close]

BLAST of CmoCh20G005940 vs. NCBI nr
Match: XP_008448227.1 (PREDICTED: uncharacterized protein LOC103490482 [Cucumis melo] >TYJ96630.1 uncharacterized protein E5676_scaffold464G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-50
Identity = 135/226 (59.73%), Postives = 152/226 (67.26%), Query Frame = 0


Query: 1   MGTVLETKPTTTLAAYLDLEDDETRISKIDPSCPSCRCSRNSGRDCSAISRPPKRNLSRT 60
           MGTV  TKP TTLAA+LDLED +T+      SCP+CRCSRN     SAIS PPK  LSRT
Sbjct: 1   MGTVRHTKPPTTLAAFLDLEDQQTQ------SCPNCRCSRN-----SAISLPPKPALSRT 60

Query: 61  ARVIVFGTILIKRVRERRSNHQQKSDRRKRSSSLDSGSSPV-----------GGIYQKNR 120
           AR IVFGTILIKRVRER+++ Q K D RKRS  LDS   PV            GIYQ+NR
Sbjct: 61  ARAIVFGTILIKRVRERKTHRQPKYDGRKRSLLLDSVRVPVKENRESVKRELDGIYQENR 120

Query: 121 DNQLVGVEPSGSSQSFPISISKPKISEKKAS-GSGTIGARQ-------GSCYAFNSGIGL 180
           +  L     SGS QSF ISIS+PKIS KK   G+  IG +Q        SCYAFNS + L
Sbjct: 121 EIPL----SSGSIQSFSISISEPKISNKKTGCGNEAIGVKQREVERSRRSCYAFNSSVRL 180

Query: 181 LLVSFGVTVMQGRVIAILITSIWVYFFAWMHMEDRWLRKKPTEFAE 208
           L+VS GVTVMQGRV+ ILITSI VYFFAWM MED WL+ K T+F E
Sbjct: 181 LMVSLGVTVMQGRVLGILITSISVYFFAWMQMEDCWLKNKATKFME 211

The following BLAST results are available for this feature:

BLAST of CmoCh20G005940 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G005940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FY81	2.7e-121	100.00	uncharacterized protein LOC111449019 OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A6J1JAX0	9.2e-114	93.86	uncharacterized protein LOC111484130 OS=Cucurbita maxima OX=3661 GN=LOC111484130...	[more]
A0A5D3B9T8	6.5e-51	59.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BK26	6.5e-51	59.73	uncharacterized protein LOC103490482 OS=Cucumis melo OX=3656 GN=LOC103490482 PE=...	[more]
A0A5A7TYI9	3.2e-50	59.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmoCh20G005940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944613.1	5.5e-121	100.00	uncharacterized protein LOC111449019 [Cucurbita moschata]	[more]
KAG7010708.1	3.6e-120	99.56	hypothetical protein SDJN02_27504, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570858.1	5.7e-118	98.68	hypothetical protein SDJN03_29773, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022986371.1	1.9e-113	93.86	uncharacterized protein LOC111484130 [Cucurbita maxima]	[more]
XP_008448227.1	1.3e-50	59.73	PREDICTED: uncharacterized protein LOC103490482 [Cucumis melo] >TYJ96630.1 uncha...	[more]

BLAST of CmoCh20G005940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..93
None	No IPR available	PANTHER	PTHR34379:SF11	OS07G0553800 PROTEIN	coord: 23..192
IPR040411	Uncharacterized protein At5g23160-like	PANTHER	PTHR34379	OS07G0553800 PROTEIN	coord: 23..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G005940.1	CmoCh20G005940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane