CmoCh20G005860 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G005860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Yae1_N domain-containing protein
Location	Cmo_Chr20: 2878573 .. 2879189 (-)
RNA-Seq Expression	CmoCh20G005860
Synteny	CmoCh20G005860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGGCTTACTCTGAAAGCCTTCGAGCTTCCCACCTTTCAAGCCCACCAAAAAGCTCTCCAATTTGGTAACTTTCCGGATACTTCGATGCCTCAAGAATGGAGTTTCTTTAGGATTGGGTGAACAGAACATCCGTCGTGGACAACAAACACCCTCGCGTCGCCAAAATCGAAGCCACCCAGCAGTCGCCAGGTAAAATCTATAAACAAAAAAGTTTCTTCTTTTCTCGTTAAATCAGTTTTCAAACACGACATCTTCATTTCTTCCCTCAATTTTGAAGAAACCCACTTGAAGTGTATGGCTATGCCGAGCCCTATAAAGCTGGCCTAGACGCTGGCAAAGAAGATACAAAATGGGTAGGCCTTAAAGCTGGTTTCGAGGTCGCCCAGCAACTAGGATTCTATCGAGGGTGTGTGGACGCGTGGAATTCTGCAATTCGAATCCAACAGAAACAGTTTCTGATTCGGGTTTGTAGAGATTGCAAGCGATTTGCGCCATTTTGGGTGTCAAATCCGAGTGTAATGGCTATCCGAAATCGGCTTCAGATGGAAAAGATATTGAGTTTTGGTTTGATTTTTGTGAAGATTGGTGGAATTTCTGAGTTCGTTAGATGA

mRNA sequence

ATGGGTGGGCTTACTCTGAAAGCCTTCGAGCTTCCCACCTTTCAAGCCCACCAAAAAGCTCTCCAATTTGGATTGGGTGAACAGAACATCCGTCGTGGACAACAAACACCCTCGCGTCGCCAAAATCGAAGCCACCCAGCAGTCGCCAGAAACCCACTTGAAGTGTATGGCTATGCCGAGCCCTATAAAGCTGGCCTAGACGCTGGCAAAGAAGATACAAAATGGGTAGGCCTTAAAGCTGGTTTCGAGGTCGCCCAGCAACTAGGATTCTATCGAGGGTGTGTGGACGCGTGGAATTCTGCAATTCGAATCCAACAGAAACAGTTTCTGATTCGGGTTTGTAGAGATTGCAAGCGATTTGCGCCATTTTGGGTGTCAAATCCGAGTGTAATGGCTATCCGAAATCGGCTTCAGATGGAAAAGATATTGAGTTTTGGTTTGATTTTTGTGAAGATTGGTGGAATTTCTGAGTTCGTTAGATGA

Coding sequence (CDS)

ATGGGTGGGCTTACTCTGAAAGCCTTCGAGCTTCCCACCTTTCAAGCCCACCAAAAAGCTCTCCAATTTGGATTGGGTGAACAGAACATCCGTCGTGGACAACAAACACCCTCGCGTCGCCAAAATCGAAGCCACCCAGCAGTCGCCAGAAACCCACTTGAAGTGTATGGCTATGCCGAGCCCTATAAAGCTGGCCTAGACGCTGGCAAAGAAGATACAAAATGGGTAGGCCTTAAAGCTGGTTTCGAGGTCGCCCAGCAACTAGGATTCTATCGAGGGTGTGTGGACGCGTGGAATTCTGCAATTCGAATCCAACAGAAACAGTTTCTGATTCGGGTTTGTAGAGATTGCAAGCGATTTGCGCCATTTTGGGTGTCAAATCCGAGTGTAATGGCTATCCGAAATCGGCTTCAGATGGAAAAGATATTGAGTTTTGGTTTGATTTTTGTGAAGATTGGTGGAATTTCTGAGTTCGTTAGATGA

Protein sequence

MGGLTLKAFELPTFQAHQKALQFGLGEQNIRRGQQTPSRRQNRSHPAVARNPLEVYGYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRDCKRFAPFWVSNPSVMAIRNRLQMEKILSFGLIFVKIGGISEFVR

Homology

[Close]

BLAST of CmoCh20G005860 vs. ExPASy TrEMBL
Match: A0A6J1CFK0 (formimidoyltransferase-cyclodeaminase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011067 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.6e-14
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           GYAE YK GL AGKE+ K VGLK GF+V ++LGFYRGCVDAWNSAI I  ++F +RV + 
Sbjct: 19  GYAEGYKDGLVAGKEEAKQVGLKVGFQVGEELGFYRGCVDAWNSAILIDPERFSVRVRKS 78

Query: 117 CKR 120
            K+
Sbjct: 79  IKQ 81

[Close]

BLAST of CmoCh20G005860 vs. ExPASy TrEMBL
Match: A0A0A0KE52 (Yae1_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G124070 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           GYA+ YK GL AGKE+ + VGLK GFEV ++LGFYRGCVD WNS IRI+ ++F IRV + 
Sbjct: 19  GYADGYKDGLVAGKEEAEQVGLKVGFEVGEELGFYRGCVDVWNSVIRIEPERFSIRVRKS 78

Query: 117 CK 119
            K
Sbjct: 79  VK 80

[Close]

BLAST of CmoCh20G005860 vs. ExPASy TrEMBL
Match: A0A5D3BVB4 (Formimidoyltransferase-cyclodeaminase isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00590 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-13
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           GYA+ Y+ GL AGKE+ + VGLK GFEV +++GFYRGCVD WNSAIRI+ ++F +RV + 
Sbjct: 19  GYADGYEDGLVAGKEEAEQVGLKVGFEVGEEIGFYRGCVDVWNSAIRIEPERFSVRVRKS 78

Query: 117 CK 119
            K
Sbjct: 79  VK 80

[Close]

BLAST of CmoCh20G005860 vs. ExPASy TrEMBL
Match: A0A1S3BJ53 (formimidoyltransferase-cyclodeaminase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490466 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-13
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           GYA+ Y+ GL AGKE+ + VGLK GFEV +++GFYRGCVD WNSAIRI+ ++F +RV + 
Sbjct: 19  GYADGYEDGLVAGKEEAEQVGLKVGFEVGEEIGFYRGCVDVWNSAIRIEPERFSVRVRKS 78

Query: 117 CK 119
            K
Sbjct: 79  VK 80

[Close]

BLAST of CmoCh20G005860 vs. ExPASy TrEMBL
Match: A0A6J1I414 (oral cancer-overexpressed protein 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111469699 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           GYAE YK GL AGKE+ K VGLK GFEV +++GF+RGCVD WNS IRI  ++F  RV + 
Sbjct: 19  GYAEGYKDGLVAGKEEAKQVGLKVGFEVGEEVGFFRGCVDVWNSVIRIHPERFSSRVQKS 78

Query: 117 CKR 120
            K+
Sbjct: 79  VKQ 81

[Close]

BLAST of CmoCh20G005860 vs. NCBI nr
Match: XP_022140379.1 (formimidoyltransferase-cyclodeaminase-like isoform X2 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-13
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           GYAE YK GL AGKE+ K VGLK GF+V ++LGFYRGCVDAWNSAI I  ++F +RV + 
Sbjct: 19  GYAEGYKDGLVAGKEEAKQVGLKVGFQVGEELGFYRGCVDAWNSAILIDPERFSVRVRKS 78

Query: 117 CKR 120
            K+
Sbjct: 79  IKQ 81

[Close]

BLAST of CmoCh20G005860 vs. NCBI nr
Match: XP_004139960.1 (formimidoyltransferase-cyclodeaminase isoform X2 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           GYA+ YK GL AGKE+ + VGLK GFEV ++LGFYRGCVD WNS IRI+ ++F IRV + 
Sbjct: 19  GYADGYKDGLVAGKEEAEQVGLKVGFEVGEELGFYRGCVDVWNSVIRIEPERFSIRVRKS 78

Query: 117 CK 119
            K
Sbjct: 79  VK 80

[Close]

BLAST of CmoCh20G005860 vs. NCBI nr
Match: KGN46702.2 (hypothetical protein Csa_020611 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-13
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           GYA+ YK GL AGKE+ + VGLK GFEV ++LGFYRGCVD WNS IRI+ ++F IRV + 
Sbjct: 19  GYADGYKDGLVAGKEEAEQVGLKVGFEVGEELGFYRGCVDVWNSVIRIEPERFSIRVRKS 78

Query: 117 CK 119
            K
Sbjct: 79  VK 80

[Close]

BLAST of CmoCh20G005860 vs. NCBI nr
Match: XP_038902357.1 (formimidoyltransferase-cyclodeaminase-like [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-13
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           G+AE YK GL AGKE+ + VGLK GFEV ++LGFYRGCVD WNS IRI+ ++F IRV + 
Sbjct: 19  GFAEGYKDGLVAGKEEAEQVGLKVGFEVGEELGFYRGCVDVWNSVIRIEPERFSIRVRKS 78

Query: 117 CKR 120
            K+
Sbjct: 79  VKQ 81

[Close]

BLAST of CmoCh20G005860 vs. NCBI nr
Match: KAA0047887.1 (formimidoyltransferase-cyclodeaminase isoform X2 [Cucumis melo var. makuwa] >TYK02166.1 formimidoyltransferase-cyclodeaminase isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-13
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQFLIRVCRD 116
           GYA+ Y+ GL AGKE+ + VGLK GFEV +++GFYRGCVD WNSAIRI+ ++F +RV + 
Sbjct: 19  GYADGYEDGLVAGKEEAEQVGLKVGFEVGEEIGFYRGCVDVWNSAIRIEPERFSVRVRKS 78

Query: 117 CK 119
            K
Sbjct: 79  VK 80

[Close]

BLAST of CmoCh20G005860 vs. TAIR 10
Match: AT2G20830.2 (transferases;folic acid binding )

HSP 1 Score: 64.7 bits (156), Expect = 7.7e-11
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 57  GYAEPYKAGLDAGKEDTKWVGLKAGFEVAQQLGFYRGCVDAWNSAIRIQQKQF 110
           G+ E Y+ GL +G+ED + +GLK GFE  + +GFYRGC   WNSA+RI   +F
Sbjct: 24  GFDEGYEEGLVSGREDARHLGLKLGFETGELIGFYRGCSALWNSALRIDPTRF 76

The following BLAST results are available for this feature:

BLAST of CmoCh20G005860 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G005860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFK0	7.6e-14	63.49	formimidoyltransferase-cyclodeaminase-like isoform X2 OS=Momordica charantia OX=...	[more]
A0A0A0KE52	1.3e-13	62.90	Yae1_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G124070 PE=4...	[more]
A0A5D3BVB4	2.9e-13	59.68	Formimidoyltransferase-cyclodeaminase isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BJ53	2.9e-13	59.68	formimidoyltransferase-cyclodeaminase isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1I414	1.1e-12	60.32	oral cancer-overexpressed protein 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CmoCh20G005860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140379.1	1.6e-13	63.49	formimidoyltransferase-cyclodeaminase-like isoform X2 [Momordica charantia]	[more]
XP_004139960.1	2.7e-13	62.90	formimidoyltransferase-cyclodeaminase isoform X2 [Cucumis sativus]	[more]
KGN46702.2	2.7e-13	62.90	hypothetical protein Csa_020611 [Cucumis sativus]	[more]
XP_038902357.1	3.5e-13	61.90	formimidoyltransferase-cyclodeaminase-like [Benincasa hispida]	[more]
KAA0047887.1	5.9e-13	59.68	formimidoyltransferase-cyclodeaminase isoform X2 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of CmoCh20G005860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20830.2	7.7e-11	50.94	transferases;folic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..45
None	No IPR available	PANTHER	PTHR28532	GEO13458P1	coord: 56..128
None	No IPR available	PANTHER	PTHR28532:SF2	SUBFAMILY NOT NAMED	coord: 56..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G005860.1	CmoCh20G005860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006820	anion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005542	folic acid binding
molecular_function	GO:0008381	mechanosensitive ion channel activity
molecular_function	GO:0016740	transferase activity