CmoCh20G005760 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G005760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionhistone deacetylase HDT1-like
LocationCmo_Chr20: 2837330 .. 2839433 (-)
RNA-Seq ExpressionCmoCh20G005760
SyntenyCmoCh20G005760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATTTTGGTAAGTTGTTTTACATTCATAGGTTCCTGTACGACATTTATCTTTTGAATTCTTATATTAGTTTGAGATGTCAATTAACTTTAGTGTGTGTTATTTCATATCAGATTCTGATTCTGGCTCGGAGGATGAAGAACTTGCATTGCCCCCTGCTCAAAATGGTAAATGCATACTATTATGAAAATATTACTACTGCTTTGGCTGTAGGAAATATACTCTACGGACATTTATCTCATCATGATTTACTTTCAGGAAAACCTAGTCAGAAGGAGGAGAAGTCTATTTCAGATAAAAGTAATGGTGCAAAGGCCGCTTCTTTGAAGAAGCCAAATGTGAAGCCTCTAGAACCGAGCAAGGATGAGGATGATGAGTCTGATGACGATGATGAATCTGACGAGGATGAAGATTCTGATGATGAATCTGATGAGGTAGTATAAAAAGAGATTATTTTGTCTTTTAATATGTTTTTTGAGAATTCTTCCATGCATCAAACCAATGTAACTGATTCCGTGGTGGAAATTTGAATCAATTTAATTTTTTATGGGAGTGATAATCCTTTGTTATGGTTAATCCTGTAGCTGGTCCTGGTTGAACACCACAGTTAACTTTGCCAGTAACCTGGTGATAAGATTCTATACATATTTTTGCCCTTGTGTCCTGTTCTGTAAATGGGCTTCTCATCCACATTATGCATTTGAATTGCAATTTGATGGCCATTTGTAATTGTATTCCTATCTCCAAGACAATATGTATGAAGTATATATATATTGTTTTCTATGAATCACGTGGCAACCAGTCTTGATTACGGTAGTTTTGTCTAAAGAATCATGTGAAGCACTCGTAATCTGGAATTTTATTGAAGATAGTCAGTGGTGCAACAATCCGGGTTTGGAATGTTTTTTGAGATTTAGCGCTGACATTTACATTTGTGATAAATGGCAGGAAATGCTTAATGCTGACAGCGGTGATTCTGATGATGAAGATGATGACTCTGACAGTGATGAGGAGACACCGAAAAAGGTTTTTTTGGTCATAGATTCTATTGTCATCTTTTTGTTACTGTTTTATGTGACAGCTTTAACATTTTTATCTTCATTCGATTATCGATATCATTATTTTGATGATCTCTTGTCCTTTTAGATTGAACCAACCAAGAAGAGGCCGAATGAGTCTGCGACCAAGACGACACCCCTCCCTGCAAAGAAGGCGAAGTTAGCTTCGCCTGGAAAGACTGGTAACTCTTTTGACCATTTATTTATTTGGCATAGCAACAGTTAGGCATAAGCAATGTTATATTTGCAAATAGTTGTTATCCTTACTCTTTTATTTATGAAGTGATCATAATTTAGCTTAGTTTCAGAAGTGGACATTTGCTTCAAAATTTGATATTGCACACTATTATATTTCCATTCAAGTGGTGCTGAATTTGTTTGTTGGTTGTTTGCCAGATTCAAAGAAGGGGGGCCATACGGCTACTCCACACCCAGCCAAGAAAACTGGTAAAACTCCTGCTGCCAAGTTAGAAAGCCCGAAATCCGGTGGTCAGTTCTCTTGCAAGTCCTGCGACAGGTATTGTTTAGTCATTATATATCAGTTGCTGAAAATGGAAGGTTCCGCGCACGTTGTTGACCATATGTTCTCCGTTGTATCAGGGCATTCGGTTCTGATGGTGCACTTCAGTCTCACAGTAAAGCTAAGCACGGGGGTAAGTAAAAACGAAGAGTGCCATAGTTTTTTACAGCTCAAATAGGTTGGTTTCTAGATAGGTTGCAGGCTTGGCTGAAATTTTGTGTGAGGGTTGAGATTTTAGAACGAGAAATGTATTTTTTTCAACTTGAGGAAGAAGATGAATTTAGTTTGATAAATGTATGAATGATGTTTTCTTGTCTAATTGCTGTACTCATTCGCTTGCATTTTACTTCGGAACTCTGTATCAGTCCCCTTTCAAGCAATGAAAGCGTTAGTGTTCAATATTATTATGGATTAATGCCTCTAGTTTTTTGCTTTGTGCAAACTGTTGATCTCTTTTTTATGAAATATTCTTAATCTTTCATAACACTAATTCAAAGTCATTAAAATATGTTAGCTGGCTTAA

mRNA sequence

ATGGCTATTTTGTTTGAGATGTCAATTAACTTTAGTGTGTGTTATTTCATATCAGATTCTGATTCTGGCTCGGAGGATGAAGAACTTGCATTGCCCCCTGCTCAAAATGGAAAACCTAGTCAGAAGGAGGAGAAGTCTATTTCAGATAAAAGTAATGGTGCAAAGGCCGCTTCTTTGAAGAAGCCAAATGTGAAGCCTCTAGAACCGAGCAAGGATGAGGATGATGAGTCTGATGACGATGATGAATCTGACGAGGATGAAGATTCTGATGATGAATCTGATGAGGAAATGCTTAATGCTGACAGCGGTGATTCTGATGATGAAGATGATGACTCTGACAGTGATGAGGAGACACCGAAAAAGATTGAACCAACCAAGAAGAGGCCGAATGAGTCTGCGACCAAGACGACACCCCTCCCTGCAAAGAAGGCGAAGTTAGCTTCGCCTGGAAAGACTGGCATAAGCAATGTTATATTTGCAAATAGTTGTTATCCTTACTCTTTTATTTATGAAAAGTGGACATTTGCTTCAAAATTTGATATTGCACACTATTATATTTCCATTCAAGTGGTGCTGAATTTGTTTGTTGGTTGTTTGCCAGATTCAAAGAAGGGGGGCCATACGGCTACTCCACACCCAGCCAAGAAAACTGGTAAAACTCCTGCTGCCAAGTTAGAAAGCCCGAAATCCGGTGGTCAGTTCTCTTGCAAGTCCTGCGACAGGTATTGTTTAGTCATTATATATCAGTTGCTGAAAATGGAAGGTTCCGCGCACGTTGTTGACCATATGTTCTCCGTTGTATCAGGGCATTCGGTTCTGATGGTGCACTTCAGTCTCACAGTAAAGCTAAGCACGGGGCTGGCTTAA

Coding sequence (CDS)

ATGGCTATTTTGTTTGAGATGTCAATTAACTTTAGTGTGTGTTATTTCATATCAGATTCTGATTCTGGCTCGGAGGATGAAGAACTTGCATTGCCCCCTGCTCAAAATGGAAAACCTAGTCAGAAGGAGGAGAAGTCTATTTCAGATAAAAGTAATGGTGCAAAGGCCGCTTCTTTGAAGAAGCCAAATGTGAAGCCTCTAGAACCGAGCAAGGATGAGGATGATGAGTCTGATGACGATGATGAATCTGACGAGGATGAAGATTCTGATGATGAATCTGATGAGGAAATGCTTAATGCTGACAGCGGTGATTCTGATGATGAAGATGATGACTCTGACAGTGATGAGGAGACACCGAAAAAGATTGAACCAACCAAGAAGAGGCCGAATGAGTCTGCGACCAAGACGACACCCCTCCCTGCAAAGAAGGCGAAGTTAGCTTCGCCTGGAAAGACTGGCATAAGCAATGTTATATTTGCAAATAGTTGTTATCCTTACTCTTTTATTTATGAAAAGTGGACATTTGCTTCAAAATTTGATATTGCACACTATTATATTTCCATTCAAGTGGTGCTGAATTTGTTTGTTGGTTGTTTGCCAGATTCAAAGAAGGGGGGCCATACGGCTACTCCACACCCAGCCAAGAAAACTGGTAAAACTCCTGCTGCCAAGTTAGAAAGCCCGAAATCCGGTGGTCAGTTCTCTTGCAAGTCCTGCGACAGGTATTGTTTAGTCATTATATATCAGTTGCTGAAAATGGAAGGTTCCGCGCACGTTGTTGACCATATGTTCTCCGTTGTATCAGGGCATTCGGTTCTGATGGTGCACTTCAGTCTCACAGTAAAGCTAAGCACGGGGCTGGCTTAA

Protein sequence

MAILFEMSINFSVCYFISDSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESDDDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTPLPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGCLPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDRYCLVIIYQLLKMEGSAHVVDHMFSVVSGHSVLMVHFSLTVKLSTGLA
Homology
BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: Q8LJS2 (Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-16
Identity = 95/232 (40.95%), Postives = 112/232 (48.28%), Query Frame = 0

Query: 20  SDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESDD 79
           SDS  EDEELAL    NGKP  K E        GAK     K   K   P+K  D + D+
Sbjct: 108 SDSSEEDEELALEGQDNGKPELKAE--------GAKVTKPSKSIPKIGAPAKAADPKKDE 167

Query: 80  DDESDEDEDSDDESDEEMLNAD-SGDSDDEDDDSDS-------DEETP-KKIEPTKKRPN 139
           DD      DSDDESD+++   D SG SD+ DDDS+S       DEETP KK++  KKRPN
Sbjct: 168 DD------DSDDESDDDLAGEDESGSSDEMDDDSNSEEESDGDDEETPAKKVDQGKKRPN 227

Query: 140 ESATKTTPLPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQV 199
           ESA K TP+ AKKAK A+P KT                                      
Sbjct: 228 ESAAK-TPISAKKAKTATPEKT-------------------------------------- 276

Query: 200 VLNLFVGCLPDSKKGGHTATPHPAKKTGKTP-AAKLESPKSGGQFSCKSCDR 242
                     D KK  H ATPHP+KK GKTP + K ++P S GQ SC SC +
Sbjct: 288 ----------DGKKSVHVATPHPSKKGGKTPNSTKGQTPNSAGQLSCASCKK 276

BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: Q6V9I6 (Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.6e-14
Identity = 81/224 (36.16%), Postives = 102/224 (45.54%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           + D    DE++ L  A +GKP  KE    + KSN  K ++  K  V+ +EP+KD++DES 
Sbjct: 105 EDDYDESDEDIPLTLANSGKPEPKE----AGKSNAGKDSASGKQKVRIVEPTKDDEDESS 164

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           DDD+SD  E                   DEDD  DS+EETPKK EP K+R  +SATK TP
Sbjct: 165 DDDDSDMGE-------------------DEDDSDDSEEETPKKAEPAKRRKADSATK-TP 224

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           +  KKAKL +P KT                                              
Sbjct: 225 VTDKKAKLTTPQKT---------------------------------------------- 249

Query: 199 LPDSKK-GGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             D KK GGH ATPHP+K+  KT       PKS G   CK C+R
Sbjct: 285 --DGKKGGGHVATPHPSKQASKT-------PKSAGSHHCKPCNR 249

BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: Q9M4U5 (Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 100/237 (42.19%), Postives = 120/237 (50.63%), Query Frame = 0

Query: 19  DSDSGSEDEELALPP-AQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDES 78
           D DS  E+EEL +P   +NGK   KEE+   +K   A AA+  K ++   + SKD+ D+S
Sbjct: 102 DLDSEDEEEELNIPVIKENGKADGKEEQKNQEK---AVAATASKSSLGLEKKSKDDSDDS 161

Query: 79  DDDDESDEDEDSDDESDE-EMLNADSGDSD--DEDDDSDSDEE---TPKKIEPTKKRPNE 138
           D+D+  D DED  D+SDE E L+ D GD D  DEDD SD DEE   TPKK E  KKR  E
Sbjct: 162 DEDESDDSDEDDSDDSDEGEGLSPDEGDDDSSDEDDTSDDDEEETPTPKKPEAGKKRGAE 221

Query: 139 SATKTTPLPAKKAKLASP--GKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQ 198
           +A K TPL  KKAK+A+P   KTG                                    
Sbjct: 222 NALK-TPLSDKKAKVATPPAQKTG------------------------------------ 281

Query: 199 VVLNLFVGCLPDSKKGG-HTATPHPAKKTGKTPA--AKL--ESPKSGGQFSCKSCDR 242
                        KKG  H ATPHPAK  GKTPA   KL  +SPKSGG   CKSC +
Sbjct: 282 ------------GKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGSVPCKSCSK 284

BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: Q56WH4 (Histone deacetylase HDT2 OS=Arabidopsis thaliana OX=3702 GN=HDT2 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 3.9e-10
Identity = 86/224 (38.39%), Postives = 112/224 (50.00%), Query Frame = 0

Query: 19  DSDSGSEDEEL--ALP-PAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLE--PSKDE 78
           D  + S+DE++  A+P PA     +     +   K++    A  K   VKP E  P  DE
Sbjct: 99  DDFTSSDDEDVPEAVPAPAPTAVTANGNAGAAVVKADTKPKA--KPAEVKPAEEKPESDE 158

Query: 79  DDESDDDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEP-TKKRPNES 138
           +DESDD+DES+ED+DS+   D +    DS D ++ED + + +EETPKK EP  KKRPNES
Sbjct: 159 EDESDDEDESEEDDDSEKGMDVD--EDDSDDDEEEDSEDEEEEETPKKPEPINKKRPNES 218

Query: 139 ATKTTPLPAKKAK-LASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVV 198
            +K TP+  KKAK  A+P  T                                       
Sbjct: 219 VSK-TPVSGKKAKPAAAPASTPQKT----------------------------------- 274

Query: 199 LNLFVGCLPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFS 236
                    + KKGGHTATPHPAKK GK+P    +SPKSGGQ S
Sbjct: 279 --------EEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSS 274

BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: O24591 (Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-09
Identity = 90/238 (37.82%), Postives = 112/238 (47.06%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPA-QNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDES 78
           D DS  EDEEL +P   +NGK  +K++KS   +     A S   P+ K    SKD DD+S
Sbjct: 102 DLDSEDEDEELNVPVVKENGKADEKKQKS---QEKAVAAPSKSSPDSK---KSKD-DDDS 161

Query: 79  DDDDESDEDEDSDDESDEEMLNADSGDSD--DEDDDSDSDEE---TPKKIEPTKKRPNES 138
           D+D+  D DED  D+SDE  L+++ GD D  DEDD SD +EE   TPKK E  KKRP ES
Sbjct: 162 DEDETDDSDEDETDDSDEG-LSSEEGDDDSSDEDDTSDDEEEDTPTPKKPEVGKKRPAES 221

Query: 139 ATKTTPLPAKKAKLASPG--KTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQV 198
           +   TPL  KKAK+A+P   KTG                                     
Sbjct: 222 SVLKTPLSDKKAKVATPSSQKTG------------------------------------- 281

Query: 199 VLNLFVGCLPDSKKGG--HTATPHPAK-----KTGKTPAAKLESPKSGGQFSCKSCDR 242
                       KKG   H ATPHPAK        K+  +   +PKSGG   CK C +
Sbjct: 282 -----------GKKGAAVHVATPHPAKGKTIVNNDKSVKSPKSAPKSGGSVPCKPCSK 283

BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A6J1FU30 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448146 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 5.8e-73
Identity = 175/223 (78.48%), Postives = 175/223 (78.48%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD
Sbjct: 107 DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 166

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP
Sbjct: 167 DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 226

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           LPAKKAKLASPGKT                                              
Sbjct: 227 LPAKKAKLASPGKT---------------------------------------------- 281

Query: 199 LPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             DSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR
Sbjct: 287 --DSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 281

BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A6J1JAV1 (histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484116 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 9.3e-71
Identity = 171/223 (76.68%), Postives = 173/223 (77.58%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD
Sbjct: 107 DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 166

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           +DDESDED+DSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKR NESATKTTP
Sbjct: 167 EDDESDEDDDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRSNESATKTTP 226

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           LPAKKAKLASPGKT                                              
Sbjct: 227 LPAKKAKLASPGKT---------------------------------------------- 281

Query: 199 LPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             DSKKGGHTATPHPAKKTGKTP AKLESPKSGGQFSCKSCDR
Sbjct: 287 --DSKKGGHTATPHPAKKTGKTPVAKLESPKSGGQFSCKSCDR 281

BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A6J1H225 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111459657 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 3.9e-53
Identity = 147/223 (65.92%), Postives = 158/223 (70.85%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           DSDSGSEDEEL LP AQNGK +QK EK+I+DKSN AKA SLKK + KPL+PSKDEDD S+
Sbjct: 107 DSDSGSEDEELELPLAQNGKATQK-EKAIADKSNAAKALSLKKSDAKPLKPSKDEDD-SE 166

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           DDDESDEDED DDESDEEMLNADS DSDDEDDD++SDEETPKK+EPTKKRPNESA+KTTP
Sbjct: 167 DDDESDEDEDFDDESDEEMLNADSSDSDDEDDDTESDEETPKKVEPTKKRPNESASKTTP 226

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           LPAKKAKLASP KT                                              
Sbjct: 227 LPAKKAKLASPEKT---------------------------------------------- 278

Query: 199 LPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             DSKKGGHTATPHP KK  KTP AK E+PKSGGQFSCKSCDR
Sbjct: 287 --DSKKGGHTATPHPTKKNAKTP-AKSETPKSGGQFSCKSCDR 278

BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A6J1K0W9 (histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111491387 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.1e-50
Identity = 143/223 (64.13%), Postives = 155/223 (69.51%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           DSDSGSEDEEL LP AQNGK +QK EK+I+DKSN AKA SLKK + KP +PSKDEDD S+
Sbjct: 107 DSDSGSEDEELELPLAQNGKATQK-EKAIADKSNAAKALSLKKSDAKPSKPSKDEDD-SE 166

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           D+DESDEDED DDESDEEMLNADS DSDD DDD++SDEETPKK+E TKKRPNESA+KTTP
Sbjct: 167 DNDESDEDEDFDDESDEEMLNADSSDSDDVDDDTESDEETPKKVEATKKRPNESASKTTP 226

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           LPAKKAKLASP KT                                              
Sbjct: 227 LPAKKAKLASPEKT---------------------------------------------- 278

Query: 199 LPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             DSKKGGHTATPHP KK  KTP AK E+PKSGGQFSCKSCDR
Sbjct: 287 --DSKKGGHTATPHPTKKNAKTP-AKSETPKSGGQFSCKSCDR 278

BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A1S3C9I8 (histone deacetylase HDT1-like OS=Cucumis melo OX=3656 GN=LOC103497976 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48
Identity = 140/223 (62.78%), Postives = 152/223 (68.16%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           DSD+GS+DEEL L  AQNGKPS K+ K    +SN AK ASLK    KPL+PSKDEDD S 
Sbjct: 107 DSDAGSDDEELPLASAQNGKPSSKDVKPGLVESNNAKKASLK----KPLKPSKDEDDVS- 166

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           +DDESD+DEDSDDESDEEML  DSGDSD+EDDDS+SDEETPKK+E  KKR NESATKTTP
Sbjct: 167 EDDESDDDEDSDDESDEEMLEGDSGDSDEEDDDSESDEETPKKVESAKKRLNESATKTTP 226

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           LPAKKAKLA+P KT                                              
Sbjct: 227 LPAKKAKLATPEKT---------------------------------------------- 276

Query: 199 LPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             DSKKGGHTATPHPAKKTGKTPAAKLE+PKSGGQFSCKSCDR
Sbjct: 287 --DSKKGGHTATPHPAKKTGKTPAAKLETPKSGGQFSCKSCDR 276

BLAST of CmoCh20G005760 vs. NCBI nr
Match: XP_022943359.1 (histone deacetylase HDT1-like [Cucurbita moschata])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-72
Identity = 175/223 (78.48%), Postives = 175/223 (78.48%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD
Sbjct: 107 DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 166

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP
Sbjct: 167 DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 226

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           LPAKKAKLASPGKT                                              
Sbjct: 227 LPAKKAKLASPGKT---------------------------------------------- 281

Query: 199 LPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             DSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR
Sbjct: 287 --DSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 281

BLAST of CmoCh20G005760 vs. NCBI nr
Match: KAG6570843.1 (Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-72
Identity = 175/223 (78.48%), Postives = 175/223 (78.48%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD
Sbjct: 401 DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 460

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP
Sbjct: 461 DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 520

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           LPAKKAKLASPGKT                                              
Sbjct: 521 LPAKKAKLASPGKT---------------------------------------------- 575

Query: 199 LPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             DSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR
Sbjct: 581 --DSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 575

BLAST of CmoCh20G005760 vs. NCBI nr
Match: XP_023513047.1 (histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.1 bits (710), Expect = 8.6e-71
Identity = 172/223 (77.13%), Postives = 173/223 (77.58%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD
Sbjct: 107 DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 166

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           DDDESDEDEDSDDESDEEMLNAD GDSDDEDDDSDSDEETPKKIEPTKKR NESATK+TP
Sbjct: 167 DDDESDEDEDSDDESDEEMLNADGGDSDDEDDDSDSDEETPKKIEPTKKRSNESATKSTP 226

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           LPAKKAKLASPGKT                                              
Sbjct: 227 LPAKKAKLASPGKT---------------------------------------------- 281

Query: 199 LPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             DSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR
Sbjct: 287 --DSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 281

BLAST of CmoCh20G005760 vs. NCBI nr
Match: XP_022986351.1 (histone deacetylase HDT1-like [Cucurbita maxima])

HSP 1 Score: 276.9 bits (707), Expect = 1.9e-70
Identity = 171/223 (76.68%), Postives = 173/223 (77.58%), Query Frame = 0

Query: 19  DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 78
           DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD
Sbjct: 107 DSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESD 166

Query: 79  DDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTP 138
           +DDESDED+DSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKR NESATKTTP
Sbjct: 167 EDDESDEDDDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRSNESATKTTP 226

Query: 139 LPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGC 198
           LPAKKAKLASPGKT                                              
Sbjct: 227 LPAKKAKLASPGKT---------------------------------------------- 281

Query: 199 LPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
             DSKKGGHTATPHPAKKTGKTP AKLESPKSGGQFSCKSCDR
Sbjct: 287 --DSKKGGHTATPHPAKKTGKTPVAKLESPKSGGQFSCKSCDR 281

BLAST of CmoCh20G005760 vs. NCBI nr
Match: KAG7010689.1 (Histone deacetylase HDT1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.7 bits (696), Expect = 3.6e-69
Identity = 178/240 (74.17%), Postives = 180/240 (75.00%), Query Frame = 0

Query: 5   FEMSIN---FSVCYFISDSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKK 64
           FE+S N    SV Y    SDSGSEDEELALPPAQNGKPSQK EKSISDKSNGAKAASLKK
Sbjct: 340 FELSHNGKSGSVYY----SDSGSEDEELALPPAQNGKPSQK-EKSISDKSNGAKAASLKK 399

Query: 65  PNVKPLEPSKDEDDESDDDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKK 124
           PNV+PLEPSKDEDDESDDDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKK
Sbjct: 400 PNVRPLEPSKDEDDESDDDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKK 459

Query: 125 IEPTKKRPNESATKTTPLPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDI 184
           IEPTKKRPNESATKTTPLPAKKAKLASPGKT                             
Sbjct: 460 IEPTKKRPNESATKTTPLPAKKAKLASPGKT----------------------------- 519

Query: 185 AHYYISIQVVLNLFVGCLPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 242
                              D KKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR
Sbjct: 520 -------------------DPKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDR 526

BLAST of CmoCh20G005760 vs. TAIR 10
Match: AT5G22650.1 (histone deacetylase 2B )

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-11
Identity = 86/224 (38.39%), Postives = 112/224 (50.00%), Query Frame = 0

Query: 19  DSDSGSEDEEL--ALP-PAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLE--PSKDE 78
           D  + S+DE++  A+P PA     +     +   K++    A  K   VKP E  P  DE
Sbjct: 99  DDFTSSDDEDVPEAVPAPAPTAVTANGNAGAAVVKADTKPKA--KPAEVKPAEEKPESDE 158

Query: 79  DDESDDDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEP-TKKRPNES 138
           +DESDD+DES+ED+DS+   D +    DS D ++ED + + +EETPKK EP  KKRPNES
Sbjct: 159 EDESDDEDESEEDDDSEKGMDVD--EDDSDDDEEEDSEDEEEEETPKKPEPINKKRPNES 218

Query: 139 ATKTTPLPAKKAK-LASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVV 198
            +K TP+  KKAK  A+P  T                                       
Sbjct: 219 VSK-TPVSGKKAKPAAAPASTPQKT----------------------------------- 274

Query: 199 LNLFVGCLPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFS 236
                    + KKGGHTATPHPAKK GK+P    +SPKSGGQ S
Sbjct: 279 --------EEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSS 274

BLAST of CmoCh20G005760 vs. TAIR 10
Match: AT5G22650.2 (histone deacetylase 2B )

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-11
Identity = 86/224 (38.39%), Postives = 112/224 (50.00%), Query Frame = 0

Query: 19  DSDSGSEDEEL--ALP-PAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLE--PSKDE 78
           D  + S+DE++  A+P PA     +     +   K++    A  K   VKP E  P  DE
Sbjct: 99  DDFTSSDDEDVPEAVPAPAPTAVTANGNAGAAVVKADTKPKA--KPAEVKPAEEKPESDE 158

Query: 79  DDESDDDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEP-TKKRPNES 138
           +DESDD+DES+ED+DS+   D +    DS D ++ED + + +EETPKK EP  KKRPNES
Sbjct: 159 EDESDDEDESEEDDDSEKGMDVD--EDDSDDDEEEDSEDEEEEETPKKPEPINKKRPNES 218

Query: 139 ATKTTPLPAKKAK-LASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVV 198
            +K TP+  KKAK  A+P  T                                       
Sbjct: 219 VSK-TPVSGKKAKPAAAPASTPQKT----------------------------------- 273

Query: 199 LNLFVGCLPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFS 236
                    + KKGGHTATPHPAKK GK+P    +SPKSGGQ S
Sbjct: 279 ---------EKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSS 273

BLAST of CmoCh20G005760 vs. TAIR 10
Match: AT5G03740.1 (histone deacetylase 2C )

HSP 1 Score: 43.9 bits (102), Expect = 2.5e-04
Identity = 61/203 (30.05%), Postives = 86/203 (42.36%), Query Frame = 0

Query: 52  NGAKAASLKKPNVKPLEPSKDEDDESDDDDESDEDEDSDDESDEEMLNADS----GDSDD 111
           + AK  + + PN        D+ D S++D   D+D ++  + +EE + A+S     DS D
Sbjct: 120 SAAKQVNFQLPNEDVKAKQDDDADGSEEDSSDDDDSENSGDEEEEKVTAESDSEEDDSSD 179

Query: 112 EDDDSDSDEETPKKIEPTKKRPNESATKTTPLPAKKAKLASPGKTGISNVIFANSCYPYS 171
           +++D  S+EETPKK E  KKR  E  +   P   KKAK  +P KT               
Sbjct: 180 DEEDDSSEEETPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKT--------------- 239

Query: 172 FIYEKWTFASKFDIAHYYISIQVVLNLFVGCLPDSKKGG-HTATPHPAKKTGKT------ 231
                                            DSKK   H ATPHP+K+ GK       
Sbjct: 240 ---------------------------------DSKKPHVHVATPHPSKQAGKNSGGGST 274

Query: 232 --PAAKLESPKSGGQFSCKSCDR 242
              + + ++PKS G F CKSC R
Sbjct: 300 GETSKQQQTPKSAGAFGCKSCTR 274

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8LJS22.2e-1640.95Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1[more]
Q6V9I62.6e-1436.16Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1[more]
Q9M4U51.1e-1242.19Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1[more]
Q56WH43.9e-1038.39Histone deacetylase HDT2 OS=Arabidopsis thaliana OX=3702 GN=HDT2 PE=1 SV=2[more]
O245912.6e-0937.82Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1FU305.8e-7378.48histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448146 PE=3... [more]
A0A6J1JAV19.3e-7176.68histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484116 PE=3 S... [more]
A0A6J1H2253.9e-5365.92histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111459657 PE=3... [more]
A0A6J1K0W94.1e-5064.13histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111491387 PE=3 S... [more]
A0A1S3C9I81.3e-4862.78histone deacetylase HDT1-like OS=Cucumis melo OX=3656 GN=LOC103497976 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_022943359.11.2e-7278.48histone deacetylase HDT1-like [Cucurbita moschata][more]
KAG6570843.11.2e-7278.48Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023513047.18.6e-7177.13histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo][more]
XP_022986351.11.9e-7076.68histone deacetylase HDT1-like [Cucurbita maxima][more]
KAG7010689.13.6e-6974.17Histone deacetylase HDT1 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
AT5G22650.12.8e-1138.39histone deacetylase 2B [more]
AT5G22650.22.8e-1138.39histone deacetylase 2B [more]
AT5G03740.12.5e-0430.05histone deacetylase 2C [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..116
NoneNo IPR availablePANTHERPTHR31802:SF12HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1coord: 18..165
coord: 201..241
NoneNo IPR availablePANTHERPTHR3180232 KDA HEAT SHOCK PROTEIN-RELATEDcoord: 18..165
coord: 201..241

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G005760.1CmoCh20G005760.1mRNA