CmoCh20G005760 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTATTTTGGTAAGTTGTTTTACATTCATAGGTTCCTGTACGACATTTATCTTTTGAATTCTTATATTAGTTTGAGATGTCAATTAACTTTAGTGTGTGTTATTTCATATCAGATTCTGATTCTGGCTCGGAGGATGAAGAACTTGCATTGCCCCCTGCTCAAAATGGTAAATGCATACTATTATGAAAATATTACTACTGCTTTGGCTGTAGGAAATATACTCTACGGACATTTATCTCATCATGATTTACTTTCAGGAAAACCTAGTCAGAAGGAGGAGAAGTCTATTTCAGATAAAAGTAATGGTGCAAAGGCCGCTTCTTTGAAGAAGCCAAATGTGAAGCCTCTAGAACCGAGCAAGGATGAGGATGATGAGTCTGATGACGATGATGAATCTGACGAGGATGAAGATTCTGATGATGAATCTGATGAGGTAGTATAAAAAGAGATTATTTTGTCTTTTAATATGTTTTTTGAGAATTCTTCCATGCATCAAACCAATGTAACTGATTCCGTGGTGGAAATTTGAATCAATTTAATTTTTTATGGGAGTGATAATCCTTTGTTATGGTTAATCCTGTAGCTGGTCCTGGTTGAACACCACAGTTAACTTTGCCAGTAACCTGGTGATAAGATTCTATACATATTTTTGCCCTTGTGTCCTGTTCTGTAAATGGGCTTCTCATCCACATTATGCATTTGAATTGCAATTTGATGGCCATTTGTAATTGTATTCCTATCTCCAAGACAATATGTATGAAGTATATATATATTGTTTTCTATGAATCACGTGGCAACCAGTCTTGATTACGGTAGTTTTGTCTAAAGAATCATGTGAAGCACTCGTAATCTGGAATTTTATTGAAGATAGTCAGTGGTGCAACAATCCGGGTTTGGAATGTTTTTTGAGATTTAGCGCTGACATTTACATTTGTGATAAATGGCAGGAAATGCTTAATGCTGACAGCGGTGATTCTGATGATGAAGATGATGACTCTGACAGTGATGAGGAGACACCGAAAAAGGTTTTTTTGGTCATAGATTCTATTGTCATCTTTTTGTTACTGTTTTATGTGACAGCTTTAACATTTTTATCTTCATTCGATTATCGATATCATTATTTTGATGATCTCTTGTCCTTTTAGATTGAACCAACCAAGAAGAGGCCGAATGAGTCTGCGACCAAGACGACACCCCTCCCTGCAAAGAAGGCGAAGTTAGCTTCGCCTGGAAAGACTGGTAACTCTTTTGACCATTTATTTATTTGGCATAGCAACAGTTAGGCATAAGCAATGTTATATTTGCAAATAGTTGTTATCCTTACTCTTTTATTTATGAAGTGATCATAATTTAGCTTAGTTTCAGAAGTGGACATTTGCTTCAAAATTTGATATTGCACACTATTATATTTCCATTCAAGTGGTGCTGAATTTGTTTGTTGGTTGTTTGCCAGATTCAAAGAAGGGGGGCCATACGGCTACTCCACACCCAGCCAAGAAAACTGGTAAAACTCCTGCTGCCAAGTTAGAAAGCCCGAAATCCGGTGGTCAGTTCTCTTGCAAGTCCTGCGACAGGTATTGTTTAGTCATTATATATCAGTTGCTGAAAATGGAAGGTTCCGCGCACGTTGTTGACCATATGTTCTCCGTTGTATCAGGGCATTCGGTTCTGATGGTGCACTTCAGTCTCACAGTAAAGCTAAGCACGGGGGTAAGTAAAAACGAAGAGTGCCATAGTTTTTTACAGCTCAAATAGGTTGGTTTCTAGATAGGTTGCAGGCTTGGCTGAAATTTTGTGTGAGGGTTGAGATTTTAGAACGAGAAATGTATTTTTTTCAACTTGAGGAAGAAGATGAATTTAGTTTGATAAATGTATGAATGATGTTTTCTTGTCTAATTGCTGTACTCATTCGCTTGCATTTTACTTCGGAACTCTGTATCAGTCCCCTTTCAAGCAATGAAAGCGTTAGTGTTCAATATTATTATGGATTAATGCCTCTAGTTTTTTGCTTTGTGCAAACTGTTGATCTCTTTTTTATGAAATATTCTTAATCTTTCATAACACTAATTCAAAGTCATTAAAATATGTTAGCTGGCTTAA ATGGCTATTTTGTTTGAGATGTCAATTAACTTTAGTGTGTGTTATTTCATATCAGATTCTGATTCTGGCTCGGAGGATGAAGAACTTGCATTGCCCCCTGCTCAAAATGGAAAACCTAGTCAGAAGGAGGAGAAGTCTATTTCAGATAAAAGTAATGGTGCAAAGGCCGCTTCTTTGAAGAAGCCAAATGTGAAGCCTCTAGAACCGAGCAAGGATGAGGATGATGAGTCTGATGACGATGATGAATCTGACGAGGATGAAGATTCTGATGATGAATCTGATGAGGAAATGCTTAATGCTGACAGCGGTGATTCTGATGATGAAGATGATGACTCTGACAGTGATGAGGAGACACCGAAAAAGATTGAACCAACCAAGAAGAGGCCGAATGAGTCTGCGACCAAGACGACACCCCTCCCTGCAAAGAAGGCGAAGTTAGCTTCGCCTGGAAAGACTGGCATAAGCAATGTTATATTTGCAAATAGTTGTTATCCTTACTCTTTTATTTATGAAAAGTGGACATTTGCTTCAAAATTTGATATTGCACACTATTATATTTCCATTCAAGTGGTGCTGAATTTGTTTGTTGGTTGTTTGCCAGATTCAAAGAAGGGGGGCCATACGGCTACTCCACACCCAGCCAAGAAAACTGGTAAAACTCCTGCTGCCAAGTTAGAAAGCCCGAAATCCGGTGGTCAGTTCTCTTGCAAGTCCTGCGACAGGTATTGTTTAGTCATTATATATCAGTTGCTGAAAATGGAAGGTTCCGCGCACGTTGTTGACCATATGTTCTCCGTTGTATCAGGGCATTCGGTTCTGATGGTGCACTTCAGTCTCACAGTAAAGCTAAGCACGGGGCTGGCTTAA ATGGCTATTTTGTTTGAGATGTCAATTAACTTTAGTGTGTGTTATTTCATATCAGATTCTGATTCTGGCTCGGAGGATGAAGAACTTGCATTGCCCCCTGCTCAAAATGGAAAACCTAGTCAGAAGGAGGAGAAGTCTATTTCAGATAAAAGTAATGGTGCAAAGGCCGCTTCTTTGAAGAAGCCAAATGTGAAGCCTCTAGAACCGAGCAAGGATGAGGATGATGAGTCTGATGACGATGATGAATCTGACGAGGATGAAGATTCTGATGATGAATCTGATGAGGAAATGCTTAATGCTGACAGCGGTGATTCTGATGATGAAGATGATGACTCTGACAGTGATGAGGAGACACCGAAAAAGATTGAACCAACCAAGAAGAGGCCGAATGAGTCTGCGACCAAGACGACACCCCTCCCTGCAAAGAAGGCGAAGTTAGCTTCGCCTGGAAAGACTGGCATAAGCAATGTTATATTTGCAAATAGTTGTTATCCTTACTCTTTTATTTATGAAAAGTGGACATTTGCTTCAAAATTTGATATTGCACACTATTATATTTCCATTCAAGTGGTGCTGAATTTGTTTGTTGGTTGTTTGCCAGATTCAAAGAAGGGGGGCCATACGGCTACTCCACACCCAGCCAAGAAAACTGGTAAAACTCCTGCTGCCAAGTTAGAAAGCCCGAAATCCGGTGGTCAGTTCTCTTGCAAGTCCTGCGACAGGTATTGTTTAGTCATTATATATCAGTTGCTGAAAATGGAAGGTTCCGCGCACGTTGTTGACCATATGTTCTCCGTTGTATCAGGGCATTCGGTTCTGATGGTGCACTTCAGTCTCACAGTAAAGCTAAGCACGGGGCTGGCTTAA MAILFEMSINFSVCYFISDSDSGSEDEELALPPAQNGKPSQKEEKSISDKSNGAKAASLKKPNVKPLEPSKDEDDESDDDDESDEDEDSDDESDEEMLNADSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTPLPAKKAKLASPGKTGISNVIFANSCYPYSFIYEKWTFASKFDIAHYYISIQVVLNLFVGCLPDSKKGGHTATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDRYCLVIIYQLLKMEGSAHVVDHMFSVVSGHSVLMVHFSLTVKLSTGLA Homology
BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: Q8LJS2 (Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.2e-16 Identity = 95/232 (40.95%), Postives = 112/232 (48.28%), Query Frame = 0
BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: Q6V9I6 (Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 2.6e-14 Identity = 81/224 (36.16%), Postives = 102/224 (45.54%), Query Frame = 0
BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: Q9M4U5 (Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12 Identity = 100/237 (42.19%), Postives = 120/237 (50.63%), Query Frame = 0
BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: Q56WH4 (Histone deacetylase HDT2 OS=Arabidopsis thaliana OX=3702 GN=HDT2 PE=1 SV=2) HSP 1 Score: 67.0 bits (162), Expect = 3.9e-10 Identity = 86/224 (38.39%), Postives = 112/224 (50.00%), Query Frame = 0
BLAST of CmoCh20G005760 vs. ExPASy Swiss-Prot
Match: O24591 (Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.6e-09 Identity = 90/238 (37.82%), Postives = 112/238 (47.06%), Query Frame = 0
BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A6J1FU30 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448146 PE=3 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 5.8e-73 Identity = 175/223 (78.48%), Postives = 175/223 (78.48%), Query Frame = 0
BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A6J1JAV1 (histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484116 PE=3 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 9.3e-71 Identity = 171/223 (76.68%), Postives = 173/223 (77.58%), Query Frame = 0
BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A6J1H225 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111459657 PE=3 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 3.9e-53 Identity = 147/223 (65.92%), Postives = 158/223 (70.85%), Query Frame = 0
BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A6J1K0W9 (histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111491387 PE=3 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 4.1e-50 Identity = 143/223 (64.13%), Postives = 155/223 (69.51%), Query Frame = 0
BLAST of CmoCh20G005760 vs. ExPASy TrEMBL
Match: A0A1S3C9I8 (histone deacetylase HDT1-like OS=Cucumis melo OX=3656 GN=LOC103497976 PE=3 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48 Identity = 140/223 (62.78%), Postives = 152/223 (68.16%), Query Frame = 0
BLAST of CmoCh20G005760 vs. NCBI nr
Match: XP_022943359.1 (histone deacetylase HDT1-like [Cucurbita moschata]) HSP 1 Score: 284.3 bits (726), Expect = 1.2e-72 Identity = 175/223 (78.48%), Postives = 175/223 (78.48%), Query Frame = 0
BLAST of CmoCh20G005760 vs. NCBI nr
Match: KAG6570843.1 (Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 284.3 bits (726), Expect = 1.2e-72 Identity = 175/223 (78.48%), Postives = 175/223 (78.48%), Query Frame = 0
BLAST of CmoCh20G005760 vs. NCBI nr
Match: XP_023513047.1 (histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 278.1 bits (710), Expect = 8.6e-71 Identity = 172/223 (77.13%), Postives = 173/223 (77.58%), Query Frame = 0
BLAST of CmoCh20G005760 vs. NCBI nr
Match: XP_022986351.1 (histone deacetylase HDT1-like [Cucurbita maxima]) HSP 1 Score: 276.9 bits (707), Expect = 1.9e-70 Identity = 171/223 (76.68%), Postives = 173/223 (77.58%), Query Frame = 0
BLAST of CmoCh20G005760 vs. NCBI nr
Match: KAG7010689.1 (Histone deacetylase HDT1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 272.7 bits (696), Expect = 3.6e-69 Identity = 178/240 (74.17%), Postives = 180/240 (75.00%), Query Frame = 0
BLAST of CmoCh20G005760 vs. TAIR 10
Match: AT5G22650.1 (histone deacetylase 2B ) HSP 1 Score: 67.0 bits (162), Expect = 2.8e-11 Identity = 86/224 (38.39%), Postives = 112/224 (50.00%), Query Frame = 0
BLAST of CmoCh20G005760 vs. TAIR 10
Match: AT5G22650.2 (histone deacetylase 2B ) HSP 1 Score: 67.0 bits (162), Expect = 2.8e-11 Identity = 86/224 (38.39%), Postives = 112/224 (50.00%), Query Frame = 0
BLAST of CmoCh20G005760 vs. TAIR 10
Match: AT5G03740.1 (histone deacetylase 2C ) HSP 1 Score: 43.9 bits (102), Expect = 2.5e-04 Identity = 61/203 (30.05%), Postives = 86/203 (42.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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