CmoCh20G005650 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G005650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr20: 2726599 .. 2727577 (+)
RNA-Seq Expression	CmoCh20G005650
Synteny	CmoCh20G005650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCGCCGCTCTTTTCTCTATCTCTCTCTGTAACTTTCTATACAGCTTAGATTTCATTTCCTTTACTTAGAAATCACAGGCAGAGAGCTTCAATGGTACGTTTTTTCTTCTCCTCTTTTTGGCATTTCACCTCTTTTTCAGATCACTCGAAGCCGTAAGTGTTAGTTTTCGAATCGATTACATATGGCAGCTTTGCGTTTCTGTGACTTCTTCTTTTGATGATGATGATGAGGTGGAGGAGGAGGAGGAGGAGAAGGTGGAGGATGATGTTTTGTTCATATTGTTCTTATCTGTGTTGCTTGTGATTTCGTTTGTTTGAGTGGTTTGTGAAATTATTAAATGTGGATTTTGGATATTCTTGTTCCGTTTTGATTTTGTTTTGTTTTTGTTTTGTTTTGTATGGCTGGGAAGGCGGGGGAAATGAATGTAACGGAAGGTTCGAATCTCTAGATTTTGATAATTGGAATAGAAGAAATGGAGTTGACTGATAGGCAGCGTTGTACTAGGAATTTTTTCCTTTTTGTGTCTCTTAATGGTGGAAAATTTGGGAGTCAAAACCGCGTTCTATTTATTTATTCTTTGCAATTGTCTGGAAATTGTTAGGGTAGTGATAGATTAATAGACTTGTGGTTTCGATTGTTTGGGTTTCTACTTTACCACAATGTTTCTCTTGTTCGTTGTGTCTCTGTCCTAAAGCTTGTATCTCGTTGAGGCTGGAAAATAAGAGTAACGGACATTTGTGGTTTTTGATGCAGCGAAATCGAGGAACCAATGTACATACGATGAGTTTTCTCCAGGCTGGTGGATTCAATGCCAGAGGAAATCAATGATGGAACTGTATTTTCAAAATTTTCTTCTCGTTTAGAGATTGAAAAGTGAAAAGGATGACCGTGAAATTCTTCATAAAGATGAGGAGCATGGGAAGAATCAATTCACGGATGCAATGATCCTGATCTTCAATGGATTGTCCAAACTCTAA

mRNA sequence

AGTCGCCGCTCTTTTCTCTATCTCTCTCTGTAACTTTCTATACAGCTTAGATTTCATTTCCTTTACTTAGAAATCACAGGCAGAGAGCTTCAATGCTTTGCGTTTCTGTGACTTCTTCTTTTGATGATGATGATGAGGTGGAGGAGGAGGAGGAGGAGAAGCGAAATCGAGGAACCAATAGATTGAAAAGTGAAAAGGATGACCGTGAAATTCTTCATAAAGATGAGGAGCATGGGAAGAATCAATTCACGGATGCAATGATCCTGATCTTCAATGGATTGTCCAAACTCTAA

Coding sequence (CDS)

ATGCTTTGCGTTTCTGTGACTTCTTCTTTTGATGATGATGATGAGGTGGAGGAGGAGGAGGAGGAGAAGCGAAATCGAGGAACCAATAGATTGAAAAGTGAAAAGGATGACCGTGAAATTCTTCATAAAGATGAGGAGCATGGGAAGAATCAATTCACGGATGCAATGATCCTGATCTTCAATGGATTGTCCAAACTCTAA

Protein sequence

MLCVSVTSSFDDDDEVEEEEEEKRNRGTNRLKSEKDDREILHKDEEHGKNQFTDAMILIFNGLSKL

Homology

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BLAST of CmoCh20G005650 vs. NCBI nr
Match: KAG7010672.1 (hypothetical protein SDJN02_27467, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 5.6e-10
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 22 EKRNRGTNRLKSEKDDREILHKDEEHGKNQFTDAMILIFNGLSKL 67
          E+ N GT RLKSEKDDREILHKDEEHGKNQFTDA ILIFNGLSKL
Sbjct: 20 EEINDGT-RLKSEKDDREILHKDEEHGKNQFTDARILIFNGLSKL 63

The following BLAST results are available for this feature:

BLAST of CmoCh20G005650 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G005650 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G005650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010672.1	5.6e-10	88.89	hypothetical protein SDJN02_27467, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh20G005650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G005650.1	CmoCh20G005650.1	mRNA