CmoCh20G005480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G005480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Rep_fac-A_C domain-containing protein
Location	Cmo_Chr20: 2653136 .. 2655465 (+)
RNA-Seq Expression	CmoCh20G005480
Synteny	CmoCh20G005480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCCGCGTCTTTTCCTTTTCCAGGAAGGGAGGCAACCTCCATCAGAGGAGTAATGGAAAACGATAAGCCAATAACAACAATGTGCGCAGTGATAGCCATGGATCACACCAGTTTCTGCTACAGAGTTTGTTCAATCTGTGAGAGGACACTCCCTAGTAACCCTCCTTTTTCTCTATGCAAATTCTGCAACTTCAACGCTTTCAATCCCGGTTCCTCCTCCTCCAAGCGTGTCTTTCGTATACTTGTGAGTATCTCCGTGTTTTTACTTGAGAATTTATTTTTAGAATGTGTGGAAACTTCATACGATGTTCTTGTCGTTGGAATTCCACTTGTAATTTGAGTGGGAAATGCCATTGGGTTTGAGCTTGTGCATTGCATTGCATTCTTTATATTGTGGCTCTGATTAGGGTTCCTATATTTCCATTGTTTTTGGCAGATGTCAATTGCTACGGATAAGAAAGTACAAACTGTTATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCCTTTGCTGGTAAATTCCCTTTGTATTTGTGAGTTACTTCTCATTGGTTTGCATGAGATTCTCTTTGAATGGACATAAACGATTTAGAACGACACGCATTTCATTAAACAACCTAGAGGCAGAGTCCTTAATGATCATCAGAAGTTGTTTGAAGATTACGTTACAAATACAATTTGTGGGAAAATTTTCGATTGTTTTCCATAAAATCTGGCTTAATCTTCGTTCATCCAAGCTGTTCTGTTTTCTAGTGATCTGATTGCTGGTGGAATTTTCATTTCGTGATGCAGCTGAAGCTGTAAGTGAAATTCTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCAAAGAATGGCAATGCACAACACTCGAGAGTTGTGCAACTTGTTCCTCTGAGTTCAGGTTTTCAACCAGCAATTCTGAGATTGAGGGAATTGTATGGGTAAGAGGCTGCTGTTAATTTTCCTCCCTTTGTCGTTAGTTCTTCTTATTATGTGGGTTTCTACATGCTTTTCTTTTTCTTGAAGGACTACCTTCTCGGGTATGGGTGGATGTTTAGGCAGGCAGATATATAGCTCCATAATCATTTAGCTAAGTTTACTTGTTTTTTGTTAGTATAATTATTTTGAGGGTCACGAAGGTTCATTCGAAGTGGATTTGTTGTGCGAAGAGTGCGTTATGACCTGTGGCCACCTACCTGGTGGGGGCAGCTCCTCCGTTCTGGGTAAATGGAAAACCCGACTCTATGAACCCGAGGAAAGGCTGCACAGTAGTAGTCAAGGCATTAAGACCGAAGCTTATTGTAGTGCTAGCAGTAATGCAAGTGAATGAATCTCATCCCCTATCAAGTTCTGAGGGAGGGAAGGACGGGAGTGAAGGGAGTTGGTTCCTTGTGAGTAGAAATAAGATTTATTGAAGTGGTTTTGGGATTTCATATTTTAATGTGGAAACCATAATAACTTGATATGGAAAGACTTAGAGTTGATGTGGGATCCCACGTCGGTTGGAGAGGGGAACAAAATATTTTTTTAAGGGTGTAGAAACCTCTTCCTAGTAGACGCGTTTTAAAAACCTTGAAGGGATGCCTGAAAGGAAAAGCTCAAAGAGTACAATATCCGCTGGTGGTGAGCTTGGGCTTGGAAATATTCTAGTGTCTTCTACATGTTTGATTGTAAACATCCAATGTCTTTGCTTCTTCCACAGAACAAGAGCTAGTATGACATGGTCTTCACCCGTTTGAGCTTCATGGAGCTGCACCATGGGCTTGTCATTTTAAGCATCCAAACAAGAAAAAGCATCTAACTCAAAGCTGTCCTAAACCAGTCCGAAAGGCCTTAAATTTTTTCTTTCCATCCAATCTCCATTCTCTCTGTCAGATGTTCTTACATAATTGAGCTAAATGCATGGGTGAAATTGTCCCTTCAGCTTCTTCTTGTTCTGACGTCTGAGACAGTTTAACTTCAAAACTTACTAGATATTCCTCGAGTACATACTCATGAAGCTGATGTTTTTTACGAGTTCTATAAGCAATAAAAGTTCGGTTGAAATTACAAAAGTTACTTGAAAGAGACTTGAAATTTCACCTGTCCGTTGGATTTTTTTGTCTTGTTTTTGGCTGGCCAAGTTATGATTGCCTAGTGGCTCTATATATTTTTAGTGAATTGACTGCTTAATTTTGCTTGCAGGCTAACCAAGGTATCATCTGCTGTTGGTAATGGACAAAACATGCATAGCTCCAAGAAGCAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAA

mRNA sequence

GCGCCGCGTCTTTTCCTTTTCCAGGAAGGGAGGCAACCTCCATCAGAGGAGTAATGGAAAACGATAAGCCAATAACAACAATGTGCGCAGTGATAGCCATGGATCACACCAGTTTCTGCTACAGAGTTTGTTCAATCTGTGAGAGGACACTCCCTAGTAACCCTCCTTTTTCTCTATGCAAATTCTGCAACTTCAACGCTTTCAATCCCGGTTCCTCCTCCTCCAAGCGTGTCTTTCGTATACTTATGTCAATTGCTACGGATAAGAAAGTACAAACTGTTATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCCTTTGCTGCTGAAGCTGTAAGTGAAATTCTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCAAAGAATGGCAATGCACAACACTCGAGAGTTGTGCAACTTGTTCCTCTGAGTTCAGGTTTTCAACCAGCAATTCTGAGATTGAGGGAATTGTATGGGCTAACCAAGGTATCATCTGCTGTTGGTAATGGACAAAACATGCATAGCTCCAAGAAGCAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAA

Coding sequence (CDS)

ATGGAAAACGATAAGCCAATAACAACAATGTGCGCAGTGATAGCCATGGATCACACCAGTTTCTGCTACAGAGTTTGTTCAATCTGTGAGAGGACACTCCCTAGTAACCCTCCTTTTTCTCTATGCAAATTCTGCAACTTCAACGCTTTCAATCCCGGTTCCTCCTCCTCCAAGCGTGTCTTTCGTATACTTATGTCAATTGCTACGGATAAGAAAGTACAAACTGTTATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCCTTTGCTGCTGAAGCTGTAAGTGAAATTCTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCAAAGAATGGCAATGCACAACACTCGAGAGTTGTGCAACTTGTTCCTCTGAGTTCAGGTTTTCAACCAGCAATTCTGAGATTGAGGGAATTGTATGGGCTAACCAAGGTATCATCTGCTGTTGGTAATGGACAAAACATGCATAGCTCCAAGAAGCAAAAGAGATGTGATGTGGGCACCTCAAAAACTACCTAA

Protein sequence

MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

Homology

[Close]

BLAST of CmoCh20G005480 vs. ExPASy TrEMBL
Match: A0A6J1FWW9 (uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.9e-101
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180
           ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180

Query: 181 VGTSKTT 188
           VGTSKTT
Sbjct: 181 VGTSKTT 187

[Close]

BLAST of CmoCh20G005480 vs. ExPASy TrEMBL
Match: A0A6J1J8M2 (uncharacterized protein LOC111483608 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111483608 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.1e-100
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180
           ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSKKQKRCD
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLAKVSSAVGNGQNMHSSKKQKRCD 180

Query: 181 VGTSKTT 188
           VGTSKTT
Sbjct: 181 VGTSKTT 187

[Close]

BLAST of CmoCh20G005480 vs. ExPASy TrEMBL
Match: A0A6J1JE09 (uncharacterized protein LOC111483608 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483608 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.6e-98
Identity = 185/193 (95.85%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF------AAEAVSEILEG 120
           FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF      AAEAVSEILEG
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAVSFRDAAEAVSEILEG 120

Query: 121 EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSK 180
           EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSK
Sbjct: 121 EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLAKVSSAVGNGQNMHSSK 180

Query: 181 KQKRCDVGTSKTT 188
           KQKRCDVGTSKTT
Sbjct: 181 KQKRCDVGTSKTT 193

[Close]

BLAST of CmoCh20G005480 vs. ExPASy TrEMBL
Match: A0A6J1FXT2 (uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448196 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 9.9e-98
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180
           ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180

[Close]

BLAST of CmoCh20G005480 vs. ExPASy TrEMBL
Match: A0A6J1JBQ0 (uncharacterized protein LOC111483608 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483608 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.9e-94
Identity = 178/186 (95.70%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF------AAEAVSEILEG 120
           FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF      AAEAVSEILEG
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAVSFRDAAEAVSEILEG 120

Query: 121 EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSK 180
           EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSK
Sbjct: 121 EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLAKVSSAVGNGQNMHSSK 180

[Close]

BLAST of CmoCh20G005480 vs. NCBI nr
Match: XP_022943427.1 (uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_022943428.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >KAG7010655.1 hypothetical protein SDJN02_27450, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 378.3 bits (970), Expect = 4.0e-101
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180
           ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180

Query: 181 VGTSKTT 188
           VGTSKTT
Sbjct: 181 VGTSKTT 187

[Close]

BLAST of CmoCh20G005480 vs. NCBI nr
Match: XP_023512879.1 (uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374.0 bits (959), Expect = 7.5e-100
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP SSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPCSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180
           ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180

Query: 181 VGTSKTT 188
           VGTSKTT
Sbjct: 181 VGTSKTT 187

[Close]

BLAST of CmoCh20G005480 vs. NCBI nr
Match: XP_022985581.1 (uncharacterized protein LOC111483608 isoform X3 [Cucurbita maxima])

HSP 1 Score: 372.9 bits (956), Expect = 1.7e-99
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120
           FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMT 120

Query: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD 180
           ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSKKQKRCD
Sbjct: 121 ISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLAKVSSAVGNGQNMHSSKKQKRCD 180

Query: 181 VGTSKTT 188
           VGTSKTT
Sbjct: 181 VGTSKTT 187

[Close]

BLAST of CmoCh20G005480 vs. NCBI nr
Match: XP_023512876.1 (uncharacterized protein LOC111777484 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512877.1 uncharacterized protein LOC111777484 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.5 bits (942), Expect = 7.0e-98
Identity = 185/193 (95.85%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP SSSSKRV
Sbjct: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPCSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF------AAEAVSEILEG 120
           FR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF      AAEAVSEILEG
Sbjct: 61  FRLLMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAVSFRDAAEAVSEILEG 120

Query: 121 EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSK 180
           EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSK
Sbjct: 121 EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSK 180

Query: 181 KQKRCDVGTSKTT 188
           KQKRCDVGTSKTT
Sbjct: 181 KQKRCDVGTSKTT 193

[Close]

BLAST of CmoCh20G005480 vs. NCBI nr
Match: XP_022985578.1 (uncharacterized protein LOC111483608 isoform X1 [Cucurbita maxima] >XP_022985579.1 uncharacterized protein LOC111483608 isoform X1 [Cucurbita maxima])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 185/193 (95.85%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60
           MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV
Sbjct: 1   MENDKRITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRV 60

Query: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF------AAEAVSEILEG 120
           FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF      AAEAVSEILEG
Sbjct: 61  FRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAVSFRDAAEAVSEILEG 120

Query: 121 EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSK 180
           EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSK
Sbjct: 121 EMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLAKVSSAVGNGQNMHSSK 180

Query: 181 KQKRCDVGTSKTT 188
           KQKRCDVGTSKTT
Sbjct: 181 KQKRCDVGTSKTT 193

[Close]

BLAST of CmoCh20G005480 vs. TAIR 10
Match: AT2G28105.1 (CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 171.0 bits (432), Expect = 9.0e-43
Identity = 90/170 (52.94%), Postives = 114/170 (67.06%), Query Frame = 0


Query: 8   TTMCAVIAMDHTSFCYRVCSICERTLPSN----PPFSLCKFCNFNAFNPGSSSSKRVFRI 67
           T +C ++A+D T +CYRVCS C+R LPS+       S CKFC        S   K ++RI
Sbjct: 6   TVLCTLLAVDLTDYCYRVCSRCQRVLPSDNNGFASSSFCKFCK-------SKEPKLLYRI 65

Query: 68  LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSEILEGEMFRMTISK 127
           LMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P AA  V+++ +GEM RMT+++
Sbjct: 66  LMSIATDASVKTVICFDRAATVLFGCSADEFFHFTKLNPLAASMVNQVFDGEMLRMTLTR 125

Query: 128 PKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSS 174
           P+N NAQH RV  +VPL SG QPAI+ LR++   TK +S        HSS
Sbjct: 126 PQNRNAQHMRVASVVPLRSGVQPAIVTLRQI--CTKNASLGNFSTTNHSS 166

The following BLAST results are available for this feature:

BLAST of CmoCh20G005480 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G005480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWW9	1.9e-101	100.00	uncharacterized protein LOC111448196 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J8M2	8.1e-100	98.93	uncharacterized protein LOC111483608 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JE09	7.6e-98	95.85	uncharacterized protein LOC111483608 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FXT2	9.9e-98	100.00	uncharacterized protein LOC111448196 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JBQ0	3.9e-94	95.70	uncharacterized protein LOC111483608 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmoCh20G005480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943427.1	4.0e-101	100.00	uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata] >XP_0229434...	[more]
XP_023512879.1	7.5e-100	98.93	uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_022985581.1	1.7e-99	98.93	uncharacterized protein LOC111483608 isoform X3 [Cucurbita maxima]	[more]
XP_023512876.1	7.0e-98	95.85	uncharacterized protein LOC111777484 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022985578.1	1.6e-97	95.85	uncharacterized protein LOC111483608 isoform X1 [Cucurbita maxima] >XP_022985579...	[more]

BLAST of CmoCh20G005480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28105.1	9.0e-43	52.94	CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR0160...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..142 e-value: 5.2E-13 score: 50.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..187
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G005480.1	CmoCh20G005480.1	mRNA