CmoCh20G005400 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G005400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 2631131 .. 2631448 (+)
RNA-Seq ExpressionCmoCh20G005400
SyntenyCmoCh20G005400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCTTTTCCCATTTCTCTTTTATCTCCTCTTCTTACTTCTTCTATCTTCTCCTTCCCCATCAATGGCTGCTCGCTGCGTCCCTCCCAGCGCGCCCAGCACCATTGTTACGCCCCTTGCCACTCCCGAAGCGGAAGACTATGAGACCGTCAAGCCTCAGCTGAATCGGAAGAGGCTTGTTTTTGGTGGTAATGAAGTCAAAAGCTGCCTCCCTAAAGGCTTCCGCCGCTCCTCTGCGCCTAGCCGCTTTGTTAACTATCATACTTCTGGTGGCTGTTCTTCAACCACTGATCATTCCATTAATACGCCTTGA

mRNA sequence

ATGGCTTCCCTTTTCCCATTTCTCTTTTATCTCCTCTTCTTACTTCTTCTATCTTCTCCTTCCCCATCAATGGCTGCTCGCTGCGTCCCTCCCAGCGCGCCCAGCACCATTGTTACGCCCCTTGCCACTCCCGAAGCGGAAGACTATGAGACCGTCAAGCCTCAGCTGAATCGGAAGAGGCTTGTTTTTGGTGGTAATGAAGTCAAAAGCTGCCTCCCTAAAGGCTTCCGCCGCTCCTCTGCGCCTAGCCGCTTTGTTAACTATCATACTTCTGGTGGCTGTTCTTCAACCACTGATCATTCCATTAATACGCCTTGA

Coding sequence (CDS)

ATGGCTTCCCTTTTCCCATTTCTCTTTTATCTCCTCTTCTTACTTCTTCTATCTTCTCCTTCCCCATCAATGGCTGCTCGCTGCGTCCCTCCCAGCGCGCCCAGCACCATTGTTACGCCCCTTGCCACTCCCGAAGCGGAAGACTATGAGACCGTCAAGCCTCAGCTGAATCGGAAGAGGCTTGTTTTTGGTGGTAATGAAGTCAAAAGCTGCCTCCCTAAAGGCTTCCGCCGCTCCTCTGCGCCTAGCCGCTTTGTTAACTATCATACTTCTGGTGGCTGTTCTTCAACCACTGATCATTCCATTAATACGCCTTGA

Protein sequence

MASLFPFLFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLNRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSSTTDHSINTP
Homology
BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A0A0KDD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147570 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.0e-40
Identity = 95/107 (88.79%), Postives = 98/107 (91.59%), Query Frame = 0

Query: 1   MASLFPFLF-YLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPE-AEDYETVKPQL-N 60
           MASLFP+ F YLLFLLLLSSP+ SM ARCVPPSAPSTIV PLATP+ AE YETVKPQL N
Sbjct: 1   MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLIN 60

Query: 61  RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSSTTDHSINT 105
           RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCS TTDHSINT
Sbjct: 61  RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINT 107

BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A5D3DGK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00130 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.0e-31
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 24  MAARCVPPSAPSTIVTPL-ATPE-AEDYETVKPQL-NRKRLVFGGNEVKSCLPKGFRRSS 83
           M ARCVPPSAPSTIV PL ATP+ AEDYETVKPQL NRKRLVFGGNEVKSCLPKGFRRSS
Sbjct: 1   MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 60

Query: 84  APSRFVNYHTSGGCSSTTDHSINT 105
           APSRFVNYHTSGGCS TTDHSINT
Sbjct: 61  APSRFVNYHTSGGCSPTTDHSINT 84

BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A2P5CZN8 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_109280 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-16
Identity = 54/95 (56.84%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 8   LFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLN-RKRLVFGGN 67
           L Y + LLLLSS   SMA R +P SAPST+V PL T   +DY +++P LN  +  VF G 
Sbjct: 33  LLYSIILLLLSSFDVSMAGRAIPSSAPSTVVRPLVTDADQDYVSLRPHLNPGQNQVFRGR 92

Query: 68  EVKSCLPKGFRRSSAPSRFVNYHTSG----GCSST 98
           E K CLPKGFR +SAPSRFVNYH  G    GCSS+
Sbjct: 93  EFKGCLPKGFRHASAPSRFVNYHPLGALSPGCSSS 127

BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A2P5FTP0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_029170 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15
Identity = 53/95 (55.79%), Postives = 63/95 (66.32%), Query Frame = 0

Query: 8   LFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLN-RKRLVFGGN 67
           L Y +  LLLSS   SMA R +P SAPST+V PL T   +DY +++P LN  +  VF G 
Sbjct: 12  LLYSIISLLLSSFDVSMAGRAIPSSAPSTVVRPLVTDADQDYVSLRPHLNPGQNQVFRGR 71

Query: 68  EVKSCLPKGFRRSSAPSRFVNYHTSG----GCSST 98
           E K CLPKGFR +SAPSRFVNYH  G    GCSS+
Sbjct: 72  EFKGCLPKGFRHASAPSRFVNYHPLGALSPGCSSS 106

BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A6A1V0C8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G011655 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.4e-15
Identity = 51/80 (63.75%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 24  MAARCVPPSAPSTIVTPLATPEAEDYETVK-PQLNRKRLVFGGNEVKSCLPKGFRRSSAP 83
           MAAR +P SAPSTIV PLA  EA+  ET+  P  N K  VF   EVK+CLPKG RRSSAP
Sbjct: 1   MAARQIPSSAPSTIVRPLAVSEAQGLETMNLPHFNHKHPVFRAREVKNCLPKGHRRSSAP 60

Query: 84  SRFVNYHT--SGGCSSTTDH 101
           SR+VNYH+  S GCSST  H
Sbjct: 61  SRYVNYHSLVSPGCSSTGGH 80

BLAST of CmoCh20G005400 vs. NCBI nr
Match: KAG6570806.1 (hypothetical protein SDJN03_29721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MASLFPFLFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLNRKR 60
           MASLFPFLFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLNRKR
Sbjct: 1   MASLFPFLFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLNRKR 60

Query: 61  LVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSSTTDHSINTP 106
           LVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSSTTDHSINTP
Sbjct: 61  LVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSSTTDHSINTP 105

BLAST of CmoCh20G005400 vs. NCBI nr
Match: KAE8646888.1 (hypothetical protein Csa_020968, partial [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 7.8e-38
Identity = 92/104 (88.46%), Postives = 95/104 (91.35%), Query Frame = 0

Query: 1   MASLFPFLF-YLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPE-AEDYETVKPQL-N 60
           MASLFP+ F YLLFLLLLSSP+ SM ARCVPPSAPSTIV PLATP+ AE YETVKPQL N
Sbjct: 3   MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLIN 62

Query: 61  RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSSTTDHS 102
           RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCS TTDHS
Sbjct: 63  RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHS 106

BLAST of CmoCh20G005400 vs. NCBI nr
Match: KAA0035234.1 (hypothetical protein E6C27_scaffold228G00110 [Cucumis melo var. makuwa] >TYK22389.1 hypothetical protein E5676_scaffold173G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 4.1e-31
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 24  MAARCVPPSAPSTIVTPL-ATPE-AEDYETVKPQL-NRKRLVFGGNEVKSCLPKGFRRSS 83
           M ARCVPPSAPSTIV PL ATP+ AEDYETVKPQL NRKRLVFGGNEVKSCLPKGFRRSS
Sbjct: 1   MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 60

Query: 84  APSRFVNYHTSGGCSSTTDHSINT 105
           APSRFVNYHTSGGCS TTDHSINT
Sbjct: 61  APSRFVNYHTSGGCSPTTDHSINT 84

BLAST of CmoCh20G005400 vs. NCBI nr
Match: KAF3961747.1 (hypothetical protein CMV_013666 [Castanea mollissima])

HSP 1 Score: 101.3 bits (251), Expect = 5.3e-18
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 1  MASLFPFLFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLNRKR 60
          M++ F +   L  LLLLSS   +MAAR +P SAPSTIV PL + EA+DY T+KP    K 
Sbjct: 1  MSTSFYYTLVLCLLLLLSSIDTNMAARKIPSSAPSTIVRPLVS-EAQDYVTMKPLFKHKH 60

Query: 61 LVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGG 94
           VF G EVKSCLPKGFR SSAPSRFVNYH  GG
Sbjct: 61 RVFRGKEVKSCLPKGFRHSSAPSRFVNYHALGG 92

BLAST of CmoCh20G005400 vs. NCBI nr
Match: PON66506.1 (hypothetical protein PanWU01x14_109280, partial [Parasponia andersonii])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 54/95 (56.84%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 8   LFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLN-RKRLVFGGN 67
           L Y + LLLLSS   SMA R +P SAPST+V PL T   +DY +++P LN  +  VF G 
Sbjct: 33  LLYSIILLLLSSFDVSMAGRAIPSSAPSTVVRPLVTDADQDYVSLRPHLNPGQNQVFRGR 92

Query: 68  EVKSCLPKGFRRSSAPSRFVNYHTSG----GCSST 98
           E K CLPKGFR +SAPSRFVNYH  G    GCSS+
Sbjct: 93  EFKGCLPKGFRHASAPSRFVNYHPLGALSPGCSSS 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDD39.0e-4088.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147570 PE=4 SV=1[more]
A0A5D3DGK42.0e-3191.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2P5CZN85.3e-1656.84Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5FTP02.6e-1555.79Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_029170 PE=4 SV... [more]
A0A6A1V0C83.4e-1563.75Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G011655 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6570806.11.2e-49100.00hypothetical protein SDJN03_29721, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646888.17.8e-3888.46hypothetical protein Csa_020968, partial [Cucumis sativus][more]
KAA0035234.14.1e-3191.67hypothetical protein E6C27_scaffold228G00110 [Cucumis melo var. makuwa] >TYK2238... [more]
KAF3961747.15.3e-1862.37hypothetical protein CMV_013666 [Castanea mollissima][more]
PON66506.11.1e-1556.84hypothetical protein PanWU01x14_109280, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36619OS04G0208900 PROTEINcoord: 7..100
NoneNo IPR availablePANTHERPTHR36619:SF2OS04G0208900 PROTEINcoord: 7..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G005400.1CmoCh20G005400.1mRNA