CmoCh20G005400 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCCTTTTCCCATTTCTCTTTTATCTCCTCTTCTTACTTCTTCTATCTTCTCCTTCCCCATCAATGGCTGCTCGCTGCGTCCCTCCCAGCGCGCCCAGCACCATTGTTACGCCCCTTGCCACTCCCGAAGCGGAAGACTATGAGACCGTCAAGCCTCAGCTGAATCGGAAGAGGCTTGTTTTTGGTGGTAATGAAGTCAAAAGCTGCCTCCCTAAAGGCTTCCGCCGCTCCTCTGCGCCTAGCCGCTTTGTTAACTATCATACTTCTGGTGGCTGTTCTTCAACCACTGATCATTCCATTAATACGCCTTGA ATGGCTTCCCTTTTCCCATTTCTCTTTTATCTCCTCTTCTTACTTCTTCTATCTTCTCCTTCCCCATCAATGGCTGCTCGCTGCGTCCCTCCCAGCGCGCCCAGCACCATTGTTACGCCCCTTGCCACTCCCGAAGCGGAAGACTATGAGACCGTCAAGCCTCAGCTGAATCGGAAGAGGCTTGTTTTTGGTGGTAATGAAGTCAAAAGCTGCCTCCCTAAAGGCTTCCGCCGCTCCTCTGCGCCTAGCCGCTTTGTTAACTATCATACTTCTGGTGGCTGTTCTTCAACCACTGATCATTCCATTAATACGCCTTGA ATGGCTTCCCTTTTCCCATTTCTCTTTTATCTCCTCTTCTTACTTCTTCTATCTTCTCCTTCCCCATCAATGGCTGCTCGCTGCGTCCCTCCCAGCGCGCCCAGCACCATTGTTACGCCCCTTGCCACTCCCGAAGCGGAAGACTATGAGACCGTCAAGCCTCAGCTGAATCGGAAGAGGCTTGTTTTTGGTGGTAATGAAGTCAAAAGCTGCCTCCCTAAAGGCTTCCGCCGCTCCTCTGCGCCTAGCCGCTTTGTTAACTATCATACTTCTGGTGGCTGTTCTTCAACCACTGATCATTCCATTAATACGCCTTGA MASLFPFLFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLNRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSSTTDHSINTP Homology
BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A0A0KDD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147570 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 9.0e-40 Identity = 95/107 (88.79%), Postives = 98/107 (91.59%), Query Frame = 0
BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A5D3DGK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00130 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 2.0e-31 Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0
BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A2P5CZN8 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_109280 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 5.3e-16 Identity = 54/95 (56.84%), Postives = 64/95 (67.37%), Query Frame = 0
BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A2P5FTP0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_029170 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15 Identity = 53/95 (55.79%), Postives = 63/95 (66.32%), Query Frame = 0
BLAST of CmoCh20G005400 vs. ExPASy TrEMBL
Match: A0A6A1V0C8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G011655 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 3.4e-15 Identity = 51/80 (63.75%), Postives = 57/80 (71.25%), Query Frame = 0
BLAST of CmoCh20G005400 vs. NCBI nr
Match: KAG6570806.1 (hypothetical protein SDJN03_29721, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of CmoCh20G005400 vs. NCBI nr
Match: KAE8646888.1 (hypothetical protein Csa_020968, partial [Cucumis sativus]) HSP 1 Score: 167.2 bits (422), Expect = 7.8e-38 Identity = 92/104 (88.46%), Postives = 95/104 (91.35%), Query Frame = 0
BLAST of CmoCh20G005400 vs. NCBI nr
Match: KAA0035234.1 (hypothetical protein E6C27_scaffold228G00110 [Cucumis melo var. makuwa] >TYK22389.1 hypothetical protein E5676_scaffold173G00130 [Cucumis melo var. makuwa]) HSP 1 Score: 144.8 bits (364), Expect = 4.1e-31 Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0
BLAST of CmoCh20G005400 vs. NCBI nr
Match: KAF3961747.1 (hypothetical protein CMV_013666 [Castanea mollissima]) HSP 1 Score: 101.3 bits (251), Expect = 5.3e-18 Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 0
BLAST of CmoCh20G005400 vs. NCBI nr
Match: PON66506.1 (hypothetical protein PanWU01x14_109280, partial [Parasponia andersonii]) HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15 Identity = 54/95 (56.84%), Postives = 64/95 (67.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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