CmoCh20G005160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G005160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr20: 2462167 .. 2464745 (+)
RNA-Seq Expression	CmoCh20G005160
Synteny	CmoCh20G005160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTGCTGTGCTAGTTGAGGATTCTTCAACATCGCCAGCCATCTTTAGGAAGTAACTGTGCCTGCATAGCCCATTGTTGTAACTCACTTGAGATGATCATCATAATATGCTGTGGAGTATTTCAAGTTAGAACTACACTATACCATCTGTTATCCGATGTTAATTCAGGATGGAAGGCTGTTGCGAGTAAGTTCCCTTGCCTCACTGCTACAATCACTTTACTTTCTGAACCTTCTTCCTGAGATATTCATTAAACCATAATGTGAAGGGGTAGGAGGAAAAGAGAAAGTTCCACTCCAAAAAGAAAAAGTTTGAAACAATAGGAATTTTTTTGGAGATTGGATGCAGTTATTCATTCATGATCTGACATGTACAAAATGAAAACTTCATTCAAGATTCTACGAGAAATTTTATGAAAGCCTTCCTCTTCTTCGATAGAAGTTTTATTTTCTCAAAATGTATCCTAATTTTTGGCCTAATTCTTTTTAAAACCCAATTTGGAACACGACTTAACACACTCTAGTGTGACAGTGAAATTATAATTCTACTGAACTATGACTCAAAACCGACATATGTACCGTCTGAAACTTGTGGCTCATATATACAGATTACAATCATTTAGGTGTTCAAATTAGAGGCACTAGCAGAGTAGAGATGATACAACAAACCTCTTTGCCTTCACCAGAGGAATCTGAATGCAAGGAAGAGTTTGAAGAGACAGGGCAGTGAGCCAGCACTTGGACGTCTGATCCCACTTCAAGAATTGCAGGAGCTCGGATGAAAACTCCACGAAATGTTTCCGGACCACCTTCAGTAGACACTAGCTCTGGTATCGACAGCTCTGCCTCAAAGCTTTGAAGCTGCATAATAATGATATCTTCTTAAATTAGGAAACTCTGAACTCAAGAAATGGACAAGTGAATATAAAGCGAACTTCAACAATAAGCTGATAACATGTATCCGGGGAAAGACAGAACATTCGGAATCAACATCAATAATTATGTTTGGATCAGCTTGTGTACAAACAAAACCATCAAGGATTCTGCATTCTGAACTCCATGCTTCAATGAAGATCTCATACTACGTGTGAGATGGAGGATTTTAAATCAAGTATGAAACTTTTCATTGGGGAAAAGTCATTATTTGAGCCCGTAGTAAGGTAGATTTTCAAATAGCTTAGTGAGGATTGTGGGAGGGATCCTACATTGACTAATTAAGGGGATGATCATGGATTTATAAGTAAGGAATACATCTCCATTGGTATGAGGCCTTTTGAGGAAACTAAAAGCAAAGCCTACGAGAGCTTATGCTCAAAGTGAACAATATCATACCATTGTGGAGATCCGTGATTTCTAACACGTAATGGTCATTAACAAGTGTCTAAGCTCCCCAGATGGCTGTATTTTTCCAACATGCTATGATTCAAAAAAACATCAGAAGCTGATTCAACTAGTCGGATGACTTGAAGGGAAAAGTTCATGTCGGCTACAGTGCCACACAGGCAGAGATAGCTTCATGCAAATTTGATTCCTGAACACATTCCATGCCAATTTCCTAGTTTCAGAACCGAATAAGAGAAAGCAACAAGAGTTACCTGACTTCCAAAGAAGTTTCTATGAACAGTACAATCCAGCCCACCAACAAGTTCCTGTCCACCGGTTTTCTGTCCTGAAAATTCATGTATCCATACCAAGTTTAGAGCGCATTTCAAGCATTTTATTGATGTTGAAATGGTGAGGAAAAGAGGAAGGAAATCCACCAGTAGCCTTGTTTGCCAAAAAGATGAGCCCTGCACAGGTGCCCCACACGGGCTTCCCCATTCTAACGAACTCACGCAAAGCAGGAAACTGGAAATATACAAAGCTACGACAACATAAATACACTCGATTCTAATTCTAAGCCAGATGATAATGAAACCATCAATTTGAGATGTCTGATATGTCTAATCTGCGAAAACAGCTTTATCGGGGCAATAGCATCGAGAAATAAAGATTAGATGTCGGCTTAAACACGATTGAATGCAAGATGCTTCAACTTTTAGGCTATTCCTATGTTCAATTTTGTGCAATTATAGGTGCAATATGTAGAGGAAAGAGGAATAAACCAAGTTATGGAGATCCGCAAGTTTGGCCATGGTGGTGCTTTCTCCACCAGGAATAATCAGAGAAGCTACATTAAGAAGCTGCTCAGGCTTCCTTATCTCTACGCCCTTCACTCCGAGCCTTCTCAAAGCTGCGCGCCACAATAACACAACAATTCATATTCATCTACAAAAGGAACTAGCAATAGCGAAGAAGAAGAAGAAGAAGAACCTGCGATGTGCTCGTTAAAAGATCCCTGCAAAGCTAGAACGCCGACGACAGGCATGTTCGTGAATTGGAGCGTTCAGTAGACCTAGAAGGCGCCAACTCCGGCTCCGACGAAGCAGGAGAAGGCTGTGGGAGCGATTGAGAGAGAATCAGAAACGCTTGCTGATTGAACACCTCCAACCTCTTCTTTCGAGTGGCGCTAATTTGAAGAGCCTGCCTGGCTGCAGCACAGGCGGCTCACTTTTTGAATAATTTTCTTTCCCTA

mRNA sequence

ATGTCTGCTGCTGTGCTAGTTGAGGATTCTTCAACATCGCCAGCCATCTTTAGGAAAACTACACTATACCATCTGTTATCCGATGTTAATTCAGGATGGAAGGCTGTTGCGAATTACAATCATTTAGGTGTTCAAATTAGAGGCACTAGCAGAGTAGAGATGATACAACAAACCTCTTTGCCTTCACCAGAGGAATCTGAATGCAAGGAAGAGTTTGAAGAGACAGGGCAAGCGCATTTCAAGCATTTTATTGATGTTGAAATGGTGAGGAAAAGAGGAAGGAAATCCACCAGTAGCCTTGTGCAATATGTAGAGGAAAGAGGAATAAACCAAGTTATGGAGATCCGCAAGTTTGGCCATGGTGGTGCTTTCTCCACCAGGAATAATCAGAGAAGCTACATTAAGAAGCTGCTCAGGCTTCCTTATCTCTACGCCCTTCACTCCGAGCCTTCTCAAAGCTGCGCGCCACAATAACACAACAATTCATATTCATCTACAAAAGGAACTAGCAATAGCGAAGAAGAAGAAGAAGAAGAACCTGCGATGTGCTCGTTAAAAGATCCCTGCAAAGCTAGAACGCCGACGACAGGCATGTTCGTGAATTGGAGCGTTCAGTAGACCTAGAAGGCGCCAACTCCGGCTCCGACGAAGCAGGAGAAGGCTGTGGGAGCGATTGAGAGAGAATCAGAAACGCTTGCTGATTGAACACCTCCAACCTCTTCTTTCGAGTGGCGCTAATTTGAAGAGCCTGCCTGGCTGCAGCACAGGCGGCTCACTTTTTGAATAATTTTCTTTCCCTA

Coding sequence (CDS)

ATGTCTGCTGCTGTGCTAGTTGAGGATTCTTCAACATCGCCAGCCATCTTTAGGAAAACTACACTATACCATCTGTTATCCGATGTTAATTCAGGATGGAAGGCTGTTGCGAATTACAATCATTTAGGTGTTCAAATTAGAGGCACTAGCAGAGTAGAGATGATACAACAAACCTCTTTGCCTTCACCAGAGGAATCTGAATGCAAGGAAGAGTTTGAAGAGACAGGGCAAGCGCATTTCAAGCATTTTATTGATGTTGAAATGGTGAGGAAAAGAGGAAGGAAATCCACCAGTAGCCTTGTGCAATATGTAGAGGAAAGAGGAATAAACCAAGTTATGGAGATCCGCAAGTTTGGCCATGGTGGTGCTTTCTCCACCAGGAATAATCAGAGAAGCTACATTAAGAAGCTGCTCAGGCTTCCTTATCTCTACGCCCTTCACTCCGAGCCTTCTCAAAGCTGCGCGCCACAATAA

Protein sequence

MSAAVLVEDSSTSPAIFRKTTLYHLLSDVNSGWKAVANYNHLGVQIRGTSRVEMIQQTSLPSPEESECKEEFEETGQAHFKHFIDVEMVRKRGRKSTSSLVQYVEERGINQVMEIRKFGHGGAFSTRNNQRSYIKKLLRLPYLYALHSEPSQSCAPQ

Homology

[Close]

BLAST of CmoCh20G005160 vs. NCBI nr
Match: KAG7010621.1 (Syntaxin-71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-16
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 32  GWKAVANYNHLGVQIRGTSRVEMIQQTSLPSPEESECKEEFEETGQ 78
           GWKAVANYNHLGVQIRGTSRVEMIQQTSLPSPEESECKEEFEETGQ
Sbjct: 339 GWKAVANYNHLGVQIRGTSRVEMIQQTSLPSPEESECKEEFEETGQ 384

The following BLAST results are available for this feature:

BLAST of CmoCh20G005160 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G005160 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G005160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010621.1	2.5e-16	100.00	Syntaxin-71, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmoCh20G005160 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G005160.1	CmoCh20G005160.1	mRNA