CmoCh20G004800 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G004800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger protein CONSTANS-like isoform X2
Location	Cmo_Chr20: 2232485 .. 2234851 (-)
RNA-Seq Expression	CmoCh20G004800
Synteny	CmoCh20G004800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCATTTGCATTCTCCAACTCTCCCGAGCTTCCTCTTCCCTCTTCTCACGTGCCCCCTGATCGGATCCTTTCATATTCTTCACGCGCCGCCGTCCTCCATGGCCTTCTCCCCGTTTCTTTCCGCCGTCTCGCATTCCTCCGCCGACCTCGCAAGCGTTGATTTTGACTGGCTGCCCGATTCCTCTATCAAGCTTTGGAACTCTGAAGTTTCCAACAGTTGTGGCGACGGTTCACCGACTTCTCCGCCGCAACCCCTAACATTTCGTCGACCAACTAATAGATTTTTATTAGACCAATCTTTTGGCCTCCTTAACCCTTCTCTCCAAACAACCAATAATCTTCTCCACCGCACCTTTTCTTCGTCATCGTCATCGCCACCGCCCCCTGCAGCCGAGAGTCTTGTCAGCCGGCCGCTCTTCCCGGCCGGTGATTTTAAGGTGAGACTTACAAAAATGAATGATTAATGATAAGGGGCACTACCTTCATACTAAGCATTTTGAGAGCTCATGTTTAAAGCATATGATATCATACTATTACGAAGATTCACACACTTATAGTGAAAAATGTAAAGATCACATCCAACAATTTCGATTTAGTTCATTCAAAATGTTACGTTTGTACCGTTCCGAACATGTTCTAAGCTGGCTGCTATAATCATAGGTAACCTCCATGCAAAGGATGATTAAAAAAAAAAAAAATATATATATATATATATATATGTATATATATGATATTATTAAATGGGGTTTGAATAATGAGTTCAGGAATGGGGATGGCAGAGGAATAAGCAGAGAGCAGAGAGTCCAGTTTCATGCGAAAGTAGCATCACCATTGAAGGGCTAAGCAGAGCTTGCAGATACAGTCCAGAAGAGAAGAAGGAAAGGATTGAAAGATATAAGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATCAAGGTAAAGTCTTCTCTCTCCTATTCTTTATCTATCCTACTTGAAATTATGGATTAATTAATTCTACACAATATTATTCTGCCTACATATTGTTTCCTAGATTCTATATGCCAACAACTATAAGCTAAAATTGTTGTTACTTTCGTATTATAATTATCATGATTTTTTTGCTTTTGTCACATCGATCTCTCTCTCACTTTAAAGGTTAAAAGGTCGTTTCAATATTTGGAAGGTAACGATGGAAAAGCCATAATTTAAAATCATCCTAAAAGTAGTCCAAGAAATGAGATGATCAAATTCTCTGGTGTCTTTTCAATAATATGATATTTGACCCTTGATTATAGGCTAATATCTTTAGCCTACAATTGCGTTTTGTCATATGTATCATATTTGACTTTTGATCATAGGCTAATATCGTGTATCCATTTAATGCTCTCTTCACTTCCTTTTATTCTGTAAATGATTATAAATAGAGAACTTTTAGTACCGTTTAGGTGTGATGGTTTTAGCAAATATTCTCGTGGTATCATAGCCATTTGAGCAGTAGAAAAGGTTGAGAAATTGATTTGAGTCCACGAAGGAACAAGTGTACTTTCGAATTATGGCTAAACGTAATCTCTAACATGAACCAAACGTCACGGGCAATGAAGAGACCAACCACAATAACAATGACTTCCTCGTTGAGAGAGGAGACAGGAAAGTCGTTGATGGGCTACTTTCCACACCAAATGAGTGTTGAGGAGGTTGCTGGTTCAAAGTGAGGTGGTGAAACTAGAGTTCCATCAACGTAATCCAACATGTCCCGACTCTCAATGAGAAGGAGAAGTTGGTTTTTCCAAATAAGATAATTTGACGAAGAAAGCTTGAGGATGATCAAATGGATTAGAGTGTTAGGAAGTAGATGAGAAGAGGATTTAGAAGCCGGTGAAGAAATGATCAGGATTGCTAAACTGGATGGGTTATGATACCATGAAAATATTTGCTAAAACCACCCCACCTACCCTAAATTGGGTAAAAGTTCTCTATTTATATCCATAGATTACATGGGTAGTGTTAAAGTAATTCACACTAATATATGAGTGTGGTTAAAGTATGCTTGTAGGAAATCGCTAGCCGATAGTCGACCACGGATCAGAGGACGATTCGCAAGGTACAACGACAACGTTGCGAAGAATTGTCCAATGCAGTGGAGTCATGGGCAAAAGGAAGAAGAAGAAGAGGAAGAGGCAAATAATGGTGGTGAAAATTGGATTAAGTATTTCATTGATGCATATTCTTCTGCAAACCTAATTCCATGAAATCTCACACAAAAACAACAATAATAATGTAATTCTAGTTCCAATAGGCCTCTTCCATTTTGACCTGCCATTCACTTGCGTGAGAGCTCTATATTTACTAATTTGAGGTTCTCTGTTTGTTTCGTATTTG

mRNA sequence

ATGCTGCATTTGCATTCTCCAACTCTCCCGAGCTTCCTCTTCCCTCTTCTCACGTGCCCCCTGATCGGATCCTTTCATATTCTTCACGCGCCGCCGTCCTCCATGGCCTTCTCCCCGTTTCTTTCCGCCGTCTCGCATTCCTCCGCCGACCTCGCAAGCGTTGATTTTGACTGGCTGCCCGATTCCTCTATCAAGCTTTGGAACTCTGAAGTTTCCAACAGTTGTGGCGACGGTTCACCGACTTCTCCGCCGCAACCCCTAACATTTCGTCGACCAACTAATAGATTTTTATTAGACCAATCTTTTGGCCTCCTTAACCCTTCTCTCCAAACAACCAATAATCTTCTCCACCGCACCTTTTCTTCGTCATCGTCATCGCCACCGCCCCCTGCAGCCGAGAGTCTTGTCAGCCGGCCGCTCTTCCCGGCCGGTGATTTTAAGGAATGGGGATGGCAGAGGAATAAGCAGAGAGCAGAGAGTCCAGTTTCATGCGAAAGTAGCATCACCATTGAAGGGCTAAGCAGAGCTTGCAGATACAGTCCAGAAGAGAAGAAGGAAAGGATTGAAAGATATAAGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATCAAGTATGCTTGTAGGAAATCGCTAGCCGATAGTCGACCACGGATCAGAGGACGATTCGCAAGGTACAACGACAACGTTGCGAAGAATTGTCCAATGCAGTGGAGTCATGGGCAAAAGGAAGAAGAAGAAGAGGAAGAGGCAAATAATGGTGGTGAAAATTGGATTAAGTATTTCATTGATGCATATTCTTCTGCAAACCTAATTCCATGAAATCTCACACAAAAACAACAATAATAATGTAATTCTAGTTCCAATAGGCCTCTTCCATTTTGACCTGCCATTCACTTGCGTGAGAGCTCTATATTTACTAATTTGAGGTTCTCTGTTTGTTTCGTATTTG

Coding sequence (CDS)

ATGCTGCATTTGCATTCTCCAACTCTCCCGAGCTTCCTCTTCCCTCTTCTCACGTGCCCCCTGATCGGATCCTTTCATATTCTTCACGCGCCGCCGTCCTCCATGGCCTTCTCCCCGTTTCTTTCCGCCGTCTCGCATTCCTCCGCCGACCTCGCAAGCGTTGATTTTGACTGGCTGCCCGATTCCTCTATCAAGCTTTGGAACTCTGAAGTTTCCAACAGTTGTGGCGACGGTTCACCGACTTCTCCGCCGCAACCCCTAACATTTCGTCGACCAACTAATAGATTTTTATTAGACCAATCTTTTGGCCTCCTTAACCCTTCTCTCCAAACAACCAATAATCTTCTCCACCGCACCTTTTCTTCGTCATCGTCATCGCCACCGCCCCCTGCAGCCGAGAGTCTTGTCAGCCGGCCGCTCTTCCCGGCCGGTGATTTTAAGGAATGGGGATGGCAGAGGAATAAGCAGAGAGCAGAGAGTCCAGTTTCATGCGAAAGTAGCATCACCATTGAAGGGCTAAGCAGAGCTTGCAGATACAGTCCAGAAGAGAAGAAGGAAAGGATTGAAAGATATAAGAGCAAAAGAAACCAGAGGAACTTCAACAAGAAGATCAAGTATGCTTGTAGGAAATCGCTAGCCGATAGTCGACCACGGATCAGAGGACGATTCGCAAGGTACAACGACAACGTTGCGAAGAATTGTCCAATGCAGTGGAGTCATGGGCAAAAGGAAGAAGAAGAAGAGGAAGAGGCAAATAATGGTGGTGAAAATTGGATTAAGTATTTCATTGATGCATATTCTTCTGCAAACCTAATTCCATGA

Protein sequence

MLHLHSPTLPSFLFPLLTCPLIGSFHILHAPPSSMAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTNRFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRNKQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP

Homology

[Close]

BLAST of CmoCh20G004800 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-06
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 176 ACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDN 230
           A + SP E++ R+ RY+ KR  R F K I+YA RK+ A+ RPRI+GRFA+  D+
Sbjct: 221 AVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDS 274

[Close]

BLAST of CmoCh20G004800 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 7.3e-06
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 172 GLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDNVA 231
           G  RA   +  E++ R+ RY+ KR  R F K I+YA RK+ A+ RPRI+GRFA+  D   
Sbjct: 283 GTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNE 342

Query: 232 KN 234
            N
Sbjct: 343 SN 344

[Close]

BLAST of CmoCh20G004800 vs. ExPASy Swiss-Prot
Match: Q9LKL2 (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=APRR1 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.6e-05
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 182 EEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDNVAKNCPMQWSHG 241
           + ++E + +++ KRNQR F+KKI+Y  RK LA+ RPR++G+F R  + V  +   Q    
Sbjct: 531 DRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLNGQPDSA 590

Query: 242 QKEEEEEEEANNGGEN 258
             ++EEEEE     EN
Sbjct: 591 DYDDEEEEEEEEEEEN 606

[Close]

BLAST of CmoCh20G004800 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.6e-05
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 180 SPEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYND 229
           SP +++ R+ RY+ K+  R F K I+YA RK+ A+ RPRI+GRFA+  D
Sbjct: 282 SPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKD 330

[Close]

BLAST of CmoCh20G004800 vs. ExPASy Swiss-Prot
Match: O82117 (Zinc finger protein CO3 OS=Oryza sativa subsp. japonica OX=39947 GN=CO3 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.1e-05
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 183 EKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYND 229
           +++ R+ RY+ KR  R F K I+YA RK+ A++RPRI+GRFA+ +D
Sbjct: 267 DREARVHRYREKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRSD 312

[Close]

BLAST of CmoCh20G004800 vs. ExPASy TrEMBL
Match: A0A6J1FXW4 (uncharacterized protein LOC111448769 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448769 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.8e-132
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 35  MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 94
           MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN
Sbjct: 1   MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 60

Query: 95  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 154
           RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN
Sbjct: 61  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 120

Query: 155 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 214
           KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD
Sbjct: 121 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 180

Query: 215 SRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 274
           SRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP
Sbjct: 181 SRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 239

[Close]

BLAST of CmoCh20G004800 vs. ExPASy TrEMBL
Match: A0A6J1JHZ7 (uncharacterized protein LOC111484524 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484524 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 6.2e-125
Identity = 228/239 (95.40%), Postives = 232/239 (97.07%), Query Frame = 0


Query: 35  MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 94
           MAFSPFLSAVSHSSADLASVDFDWLPDSS+KLW SEVS+SCGDGS TSPPQPLTFRRPTN
Sbjct: 1   MAFSPFLSAVSHSSADLASVDFDWLPDSSVKLWKSEVSDSCGDGSATSPPQPLTFRRPTN 60

Query: 95  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 154
           RFLLDQSF LLNPSL+TTNNLLHRTFSSSSSS PPP AESLVSRPLF AGDFKEWGWQRN
Sbjct: 61  RFLLDQSFSLLNPSLRTTNNLLHRTFSSSSSSTPPPTAESLVSRPLFQAGDFKEWGWQRN 120

Query: 155 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 214
           KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD
Sbjct: 121 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 180

Query: 215 SRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 274
           SRPRIRGRFARYNDNVAKN PM+WSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP
Sbjct: 181 SRPRIRGRFARYNDNVAKNFPMKWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 239

[Close]

BLAST of CmoCh20G004800 vs. ExPASy TrEMBL
Match: A0A6J1FWF0 (zinc finger protein CONSTANS-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448769 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 9.3e-105
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 35  MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 94
           MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN
Sbjct: 1   MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 60

Query: 95  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 154
           RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN
Sbjct: 61  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 120

Query: 155 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 214
           KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD
Sbjct: 121 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 180

Query: 215 SRPRIRGRFARYNDN 230
           SRPRIRGRFARYNDN
Sbjct: 181 SRPRIRGRFARYNDN 195

[Close]

BLAST of CmoCh20G004800 vs. ExPASy TrEMBL
Match: A0A6J1JHG4 (two-component response regulator-like APRR9 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484524 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 5.8e-99
Identity = 186/195 (95.38%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 35  MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 94
           MAFSPFLSAVSHSSADLASVDFDWLPDSS+KLW SEVS+SCGDGS TSPPQPLTFRRPTN
Sbjct: 1   MAFSPFLSAVSHSSADLASVDFDWLPDSSVKLWKSEVSDSCGDGSATSPPQPLTFRRPTN 60

Query: 95  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 154
           RFLLDQSF LLNPSL+TTNNLLHRTFSSSSSS PPP AESLVSRPLF AGDFKEWGWQRN
Sbjct: 61  RFLLDQSFSLLNPSLRTTNNLLHRTFSSSSSSTPPPTAESLVSRPLFQAGDFKEWGWQRN 120

Query: 155 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 214
           KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD
Sbjct: 121 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 180

Query: 215 SRPRIRGRFARYNDN 230
           SRPRIRGRFARYNDN
Sbjct: 181 SRPRIRGRFARYNDN 195

[Close]

BLAST of CmoCh20G004800 vs. ExPASy TrEMBL
Match: A0A5D3CRZ2 (Zinc finger protein CONSTANS-LIKE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G001070 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 8.2e-85
Identity = 176/243 (72.43%), Postives = 200/243 (82.30%), Query Frame = 0


Query: 35  MAFSPFLSAVSHSSADLASVDFD-WLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPT 94
           MAFSPFLSA SHSSAD+A VDFD WLPDSSIKLWNSE S+SCGDGSP SPP+PL     T
Sbjct: 1   MAFSPFLSAASHSSADIAGVDFDHWLPDSSIKLWNSEFSDSCGDGSPPSPPEPLKIHPST 60

Query: 95  NRFLLDQSFGLLN-PSLQTTN-NLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGW 154
           N FLL QSF LLN  SLQ+ N + L RTFSSS S PP  A +  ++RPLFPAGDF++   
Sbjct: 61  NNFLLHQSFPLLNHDSLQSNNDSFLQRTFSSSLSPPPSAAIDPPINRPLFPAGDFQQ-KK 120

Query: 155 QRNKQRAESPVSCESSIT-IEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRK 214
             N++  ESPVSCESSIT IEG+SRACRYSPEEKKERIERY++KRNQRNFNKKIKYACRK
Sbjct: 121 NNNERGDESPVSCESSITIIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRK 180

Query: 215 SLADSRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSAN 274
           SLADSRPRIRGRFARYND V KN P+QW+  ++EE+++ EAN+ G+NWIKYFID Y SAN
Sbjct: 181 SLADSRPRIRGRFARYNDEVVKNYPVQWNLQREEEQQQREANSCGDNWIKYFIDTY-SAN 240

[Close]

BLAST of CmoCh20G004800 vs. NCBI nr
Match: KAG6570739.1 (Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 531.6 bits (1368), Expect = 4.1e-147
Identity = 265/273 (97.07%), Postives = 269/273 (98.53%), Query Frame = 0


Query: 1   MLHLHSPTLPSFLFPLLTCPLIGSFHILHAPPSSMAFSPFLSAVSHSSADLASVDFDWLP 60
           MLHLHSPTLPSFLFPLLTCPLIGSFHILHAPPSSMAF PFLSAVSHSSADLASVDFDWLP
Sbjct: 1   MLHLHSPTLPSFLFPLLTCPLIGSFHILHAPPSSMAFYPFLSAVSHSSADLASVDFDWLP 60

Query: 61  DSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTNRFLLDQSFGLLNPSLQTTNNLLHRTF 120
           +SSIKLWNSEVS+SCGDGSPTSPPQPLTFRRPTNRFLLDQSF LLNPSLQTT N+LHRTF
Sbjct: 61  NSSIKLWNSEVSDSCGDGSPTSPPQPLTFRRPTNRFLLDQSFSLLNPSLQTT-NILHRTF 120

Query: 121 SSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRNKQRAESPVSCESSITIEGLSRACRYS 180
           SSSSSSPPPP AESLVSRPLFPAGDFKEWGWQRNKQRAESPVSCESSITIEGLSRACRYS
Sbjct: 121 SSSSSSPPPPTAESLVSRPLFPAGDFKEWGWQRNKQRAESPVSCESSITIEGLSRACRYS 180

Query: 181 PEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDNVAKNCPMQWSH 240
           PEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDNVAKNCP+QWSH
Sbjct: 181 PEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDNVAKNCPIQWSH 240

Query: 241 GQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 274
           GQKEEEEEEEANNGGENWIKYFIDAYSSANLIP
Sbjct: 241 GQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 272

[Close]

BLAST of CmoCh20G004800 vs. NCBI nr
Match: XP_023511996.1 (uncharacterized protein LOC111776840 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515.4 bits (1326), Expect = 3.0e-142
Identity = 259/273 (94.87%), Postives = 263/273 (96.34%), Query Frame = 0


Query: 1   MLHLHSPTLPSFLFPLLTCPLIGSFHILHAPPSSMAFSPFLSAVSHSSADLASVDFDWLP 60
           MLHLHSPT PSFLFPLLTCPLIGSFHILHAPPSSMAFSPFLS V+HSSADLA VDFDWLP
Sbjct: 1   MLHLHSPTFPSFLFPLLTCPLIGSFHILHAPPSSMAFSPFLSGVTHSSADLAGVDFDWLP 60

Query: 61  DSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTNRFLLDQSFGLLNPSLQTTNNLLHRTF 120
           DSSIKLWNSEVS+SCGDGSPTSPPQPLTFRRPTNRFLLDQSF LLNPSLQTT++ LHRTF
Sbjct: 61  DSSIKLWNSEVSDSCGDGSPTSPPQPLTFRRPTNRFLLDQSFSLLNPSLQTTSS-LHRTF 120

Query: 121 SSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRNKQRAESPVSCESSITIEGLSRACRYS 180
           SSSSSSPPPP AESL SRPLFPAGDFKEWGWQRNKQRAESPVSCESSITIEGLSRACRYS
Sbjct: 121 SSSSSSPPPPTAESLPSRPLFPAGDFKEWGWQRNKQRAESPVSCESSITIEGLSRACRYS 180

Query: 181 PEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDNVAKNCPMQWSH 240
           PEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDN AKNCPMQWSH
Sbjct: 181 PEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDNPAKNCPMQWSH 240

Query: 241 GQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 274
            QK EEEEEEANNGGENWIKYFIDAYSSANLIP
Sbjct: 241 EQK-EEEEEEANNGGENWIKYFIDAYSSANLIP 271

[Close]

BLAST of CmoCh20G004800 vs. NCBI nr
Match: XP_022944273.1 (uncharacterized protein LOC111448769 isoform X1 [Cucurbita moschata])

HSP 1 Score: 481.9 bits (1239), Expect = 3.7e-132
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 35  MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 94
           MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN
Sbjct: 1   MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 60

Query: 95  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 154
           RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN
Sbjct: 61  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 120

Query: 155 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 214
           KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD
Sbjct: 121 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 180

Query: 215 SRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 274
           SRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP
Sbjct: 181 SRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 239

[Close]

BLAST of CmoCh20G004800 vs. NCBI nr
Match: XP_022986933.1 (uncharacterized protein LOC111484524 isoform X1 [Cucurbita maxima])

HSP 1 Score: 456.8 bits (1174), Expect = 1.3e-124
Identity = 228/239 (95.40%), Postives = 232/239 (97.07%), Query Frame = 0


Query: 35  MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 94
           MAFSPFLSAVSHSSADLASVDFDWLPDSS+KLW SEVS+SCGDGS TSPPQPLTFRRPTN
Sbjct: 1   MAFSPFLSAVSHSSADLASVDFDWLPDSSVKLWKSEVSDSCGDGSATSPPQPLTFRRPTN 60

Query: 95  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 154
           RFLLDQSF LLNPSL+TTNNLLHRTFSSSSSS PPP AESLVSRPLF AGDFKEWGWQRN
Sbjct: 61  RFLLDQSFSLLNPSLRTTNNLLHRTFSSSSSSTPPPTAESLVSRPLFQAGDFKEWGWQRN 120

Query: 155 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 214
           KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD
Sbjct: 121 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 180

Query: 215 SRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 274
           SRPRIRGRFARYNDNVAKN PM+WSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP
Sbjct: 181 SRPRIRGRFARYNDNVAKNFPMKWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLIP 239

[Close]

BLAST of CmoCh20G004800 vs. NCBI nr
Match: XP_022944274.1 (zinc finger protein CONSTANS-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 389.8 bits (1000), Expect = 1.9e-104
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 35  MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 94
           MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN
Sbjct: 1   MAFSPFLSAVSHSSADLASVDFDWLPDSSIKLWNSEVSNSCGDGSPTSPPQPLTFRRPTN 60

Query: 95  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 154
           RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN
Sbjct: 61  RFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQRN 120

Query: 155 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 214
           KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD
Sbjct: 121 KQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLAD 180

Query: 215 SRPRIRGRFARYNDN 230
           SRPRIRGRFARYNDN
Sbjct: 181 SRPRIRGRFARYNDN 195

[Close]

BLAST of CmoCh20G004800 vs. TAIR 10
Match: AT5G59990.1 (CCT motif family protein )

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-22
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 153 RNKQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSL 212
           R+ +R  S V  ES+  IEG+S+A +YSPEEKKE+IE+Y+SKRN RNFNK+IKY CRK+L
Sbjct: 132 RSSRRESSTVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTL 191

Query: 213 ADSRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDAYSSANLI 272
           ADSRPRIRGRFAR ND ++          Q+E+ +  EA  G  +    F+D++S+ + +
Sbjct: 192 ADSRPRIRGRFAR-NDEIS----------QQEQVDVMEAVVGDVDTWASFLDSFSANHFL 240

[Close]

BLAST of CmoCh20G004800 vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein )

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-17
Identity = 63/162 (38.89%), Postives = 94/162 (58.02%), Query Frame = 0


Query: 93  TNRFLLDQSFGLLNPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFKEWGWQ 152
           T + L +  F    P ++ ++N  ++   +S    P  +  S   R ++  GD +  G  
Sbjct: 101 TEQLLFNSPFDA--PFMEDSSNFQNQNLLNS----PEDSFFSDHMRRVYSTGDLQNLGRD 160

Query: 153 RNKQRA-ESPVSCESSITI-----EGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKY 212
              QR+  SP++ ESS T      E   R  RYS EE+KE+I +Y++KR QRNF K IKY
Sbjct: 161 FTGQRSYSSPLAAESSPTTVFSGDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKY 220

Query: 213 ACRKSLADSRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEE 249
           ACRK+LAD+RPR+RGRFAR ND V +N  +  S  ++E +++
Sbjct: 221 ACRKTLADNRPRVRGRFAR-NDEVFENPKIASSFTRQENDDD 255

[Close]

BLAST of CmoCh20G004800 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 85.1 bits (209), Expect = 9.4e-17
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 106 NPSLQTTNNLLHRTFSSSSSSPPPPAAESLVSRPLFPAGDFK-EWGWQRNKQRAESPVSC 165
           N  +  ++NL +   SS     P  A  S   R ++  GD +     QR+ + +  P S 
Sbjct: 147 NIPMMDSSNLSYNNLSS-----PENAFFSSQMRRVYSTGDLQNNMEMQRSSENSTMPFSE 206

Query: 166 ESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFA 225
           E +  +       RYS EE+KE+I +Y++KRNQRNF K IKYACRK+LADSRPRIRGRFA
Sbjct: 207 EQNFKVG------RYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFA 262

Query: 226 RYNDNVAK 233
           R ND V +
Sbjct: 267 R-NDEVVE 262

[Close]

BLAST of CmoCh20G004800 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 )

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-16
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 0


Query: 138 RPLF-PAGDFKEWGWQRNKQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRN 197
           +PLF PA   + WG            + E  I  E  ++  RYS EE+K+RI RY  K+N
Sbjct: 104 KPLFRPATGEQSWG------------NSEGGIQAEPNTKVGRYSVEERKDRIMRYLKKKN 163

Query: 198 QRNFNKKIKYACRKSLADSRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGE 257
           QRNFNK IKY CRK+LAD R R+RGRFAR ND   +   M  +H    E+EE+  +   +
Sbjct: 164 QRNFNKTIKYVCRKTLADRRVRVRGRFARNNDTCEEQPHMSKNHNNHSEKEEDMFSGSDD 223

Query: 258 NWIKYFID----AYSSANLIP 274
             I+   D      + +NLIP
Sbjct: 224 YLIQMEHDDGWLHEAMSNLIP 232

[Close]

BLAST of CmoCh20G004800 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-15
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 173 LSRACRYSPEEKKERIERYKSKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDNVAK 232
           L++  + SPE++KE+I RY  KRN+RNFNKKIKYACRK+LADSRPR+RGRFA+ ++    
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 359

Query: 233 NCPMQWSHGQKEEEEE 249
           N     SH   E+E++
Sbjct: 360 NRQAFSSHHDDEDEDD 375

The following BLAST results are available for this feature:

BLAST of CmoCh20G004800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SK53	4.3e-06	50.00	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
Q940T9	7.3e-06	45.16	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]
Q9LKL2	3.6e-05	39.47	Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
O50055	3.6e-05	48.98	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1...	[more]
O82117	8.1e-05	50.00	Zinc finger protein CO3 OS=Oryza sativa subsp. japonica OX=39947 GN=CO3 PE=2 SV=...	[more]

BLAST of CmoCh20G004800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXW4	1.8e-132	100.00	uncharacterized protein LOC111448769 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JHZ7	6.2e-125	95.40	uncharacterized protein LOC111484524 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FWF0	9.3e-105	100.00	zinc finger protein CONSTANS-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JHG4	5.8e-99	95.38	two-component response regulator-like APRR9 isoform X2 OS=Cucurbita maxima OX=36...	[more]
A0A5D3CRZ2	8.2e-85	72.43	Zinc finger protein CONSTANS-LIKE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of CmoCh20G004800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570739.1	4.1e-147	97.07	Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023511996.1	3.0e-142	94.87	uncharacterized protein LOC111776840 [Cucurbita pepo subsp. pepo]	[more]
XP_022944273.1	3.7e-132	100.00	uncharacterized protein LOC111448769 isoform X1 [Cucurbita moschata]	[more]
XP_022986933.1	1.3e-124	95.40	uncharacterized protein LOC111484524 isoform X1 [Cucurbita maxima]	[more]
XP_022944274.1	1.9e-104	100.00	zinc finger protein CONSTANS-like isoform X2 [Cucurbita moschata]	[more]

BLAST of CmoCh20G004800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59990.1	2.0e-22	50.83	CCT motif family protein	[more]
AT1G63820.1	2.5e-17	38.89	CCT motif family protein	[more]
AT5G41380.1	9.4e-17	44.53	CCT motif family protein	[more]
AT3G12890.1	1.2e-16	41.13	activator of spomin::LUC2	[more]
AT2G33350.1	2.3e-15	55.26	CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 185..225 e-value: 1.8E-17 score: 63.1
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 184..226 score: 15.318611
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..137
None	No IPR available	PANTHER	PTHR31319:SF76	CCT MOTIF PROTEIN	coord: 87..270
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 87..270

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G004800.1	CmoCh20G004800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding