CmoCh20G004440 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G004440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr20: 2063801 .. 2064906 (+)
RNA-Seq Expression	CmoCh20G004440
Synteny	CmoCh20G004440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTATTTTTTAATTGCAGGCCAAATGGTCTTCAGAATTGTTGGGAGATGAGATGGATATCGTGATCCTTTCTGGTAGCTATGGATTTACCCATAATAAACCCAGCCATGGTTGTCACTGAAGTTTATTGTGGTACTGCATTCATGTGAACTGTATTTGTTGTGTGCATTTTCATTCTGTATATTATGCTTATTTCCGAACTAGAGTGTGAAATGAATTATCGAAATATTGAATAGTTTGTTCGGGAGGCCAAAGGGAACATATCTTCTTTCCAAACTCGTGTTAACATTTTCGAAGTTCTGAAATGAATTATTTTATGGTATTCGATGTCTCCTTATCTAATCTTACGATTAGCTATGTTTAGTTGACTTGATAATCCCAACTCATTGGTGTATTGCATAACTATAATTCAGGGAACTCATTACGAACATGTACCGCATATTTTATACAGAGAAACCAAAAAGCTATGTTTAGTTGCTTTTCCTAACAAGAATTTTGATTAGAGGTAGGGAAGAACCAAATGAGCCACAAAACTGCAGTGGTTGTTTGTATACATCCAAACAAGAAACTCAGTACAGATAAACAGACGTATGTGTGTGATTGAAAATGCTAAGAATCTTATCTATTCCACCTACTTGGACCTGACAGAACAAGAACTTCTATGTACTGATTTGGAGATTGCCACTATACAGTATTATCAACAACATGATCTAACCAGGAATCCTAAAAACTTATGACTTTTAGACGATTTGGAGATTGCCACTATACAGTATTATCAACAACATGATCTAACCAGGAATCCTAAAAACTTATGACTTCCTCTAAAAGCTCATCAAGAATCAAATCCTCCAACTCAAGTGCGTTGTACTCTATTTCAGTTTGGAGGTTCATCCAATCGTCACCTTTTCTTAAATCTCGCCCCACAACATCGTCTAATGACTGGTCTAGTTCTGGTCCCAAGCATAGGTACCAGGCAACTTTTTCTCGGACATCCTCGAGAAGATACTGCCCGAGTGGCATTGGTCGGATTTGGGTTCTCGAGGAGAAGGTTTTAAGGAAAGAAGTGAATGATTTTTCAAATACATTGTGTGATGTCTCATAA

mRNA sequence

ATGGATGCCAAATGGTCTTCAGAATTGTTGGGAGATGAGATGGATATCGTGATCCTTTCTGGTAGCTATGGATTTACCCATAATAAACCCAGCCATGTTTGGAGGTTCATCCAATCGTCACCTTTTCTTAAATCTCGCCCCACAACATCGTCTAATGACTGGTCTAGTTCTGGTCCCAAGCATAGGTACCAGGCAACTTTTTCTCGGACATCCTCGAGAAGATACTGCCCGAGTGGCATTGGTCGGATTTGGGTTCTCGAGGAGAAGGTTTTAAGGAAAGAAGTGAATGATTTTTCAAATACATTGTGTGATGTCTCATAA

Coding sequence (CDS)

ATGGATGCCAAATGGTCTTCAGAATTGTTGGGAGATGAGATGGATATCGTGATCCTTTCTGGTAGCTATGGATTTACCCATAATAAACCCAGCCATGTTTGGAGGTTCATCCAATCGTCACCTTTTCTTAAATCTCGCCCCACAACATCGTCTAATGACTGGTCTAGTTCTGGTCCCAAGCATAGGTACCAGGCAACTTTTTCTCGGACATCCTCGAGAAGATACTGCCCGAGTGGCATTGGTCGGATTTGGGTTCTCGAGGAGAAGGTTTTAAGGAAAGAAGTGAATGATTTTTCAAATACATTGTGTGATGTCTCATAA

Protein sequence

MDAKWSSELLGDEMDIVILSGSYGFTHNKPSHVWRFIQSSPFLKSRPTTSSNDWSSSGPKHRYQATFSRTSSRRYCPSGIGRIWVLEEKVLRKEVNDFSNTLCDVS

Homology

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BLAST of CmoCh20G004440 vs. NCBI nr
Match: KAG6570706.1 (CAX-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 3   AKWSSELLGDEMDIVILSGSYGFTHNKPSH 33
           AKWSSELLGDEMDIVILSGSYGFTHNKPSH
Sbjct: 311 AKWSSELLGDEMDIVILSGSYGFTHNKPSH 340

The following BLAST results are available for this feature:

BLAST of CmoCh20G004440 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G004440 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G004440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570706.1	8.5e-08	100.00	CAX-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh20G004440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G004440.1	CmoCh20G004440.1	mRNA