CmoCh20G004320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G004320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Rab5-interacting
Location	Cmo_Chr20: 2025958 .. 2027755 (+)
RNA-Seq Expression	CmoCh20G004320
Synteny	CmoCh20G004320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAATCGAAACCGATGAAGCTCAATCTTCATCAGCATCAAGATCACCAAAATGGTCACTTGGCTCCGTTCAAGCTCGCAAAATTGTTCGATCCAGAGGCCTCCTGGGACAAGGTACTTGAATTTTAGGTCTTGGATTCATGTGGAAATTGCTGTACATCTTTACTATTGCTGCTTATGTTCTCTGTTGTATTTAAGAGGAATTAGGATTTAAGCGTTCCATTGTAGTGTTGAATGTTGCAATTTAAGTAAAGTTTTTAATTGGTGAAATGTCACGTTCATTAATTCTTGATTTAGAAAGTAAGGGAAAACTGTTATTGCGACTTTACATCTTCCAATTGGTGCTTCTATACGTGGAGTCCCACTATCACCTTCTATTTGGAGGCTTCAATTTGATGCCTGTATTGAGTTTTCTTAAAGAACTAGATTGCTTCCATACTGTTCTTAGTTTCTGTTCATCAAATCTGTCAATAGGACCAACTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTTCTTGGACTTCTGTGGGGATCCATACCTTTGGTTGGAGGCATTTGGTTTCTAATGTGAGTGTTGCGTATTCCAAACCTTCTGAATACTCAATTACTGTGAAATCATATATGCGTTGTTCTTTATGTAGCTTATTGTTAGCCTCATGATATCAACTAGCATTGTATATGGATACTATGCAAGCTATCTTACAGATGCTTGTTTCCATTTTCAGTTTCCTGGCGATATCAACCAGCATCGTACATGGATACTATGCGATGATATTGAAAGTTGATGAAGAAGAATTTGGAGGTCATGGAGCTCTTCTCCAAGAGGGCCTTTTCGCTTCTATAACTCTCTTTCTGGTACTTTGGCATCTTTATGCTTTACTTTACTCAATAATGCAATGCACCTTAACCGAACTCTTCTTCAGGAAGGGATTCTTTTGCTTTCAAGTTCAAATTCAACAAGTTCAGTCTATATGATTTTGCTTACTTCCTTCTCTTCTTGTTTTTTCAGCTTGCTTGGATTCTCGTATACAGCTTGGCACACTTTTGATTGGCAACGAATGAGTTTGCATCCATGAAATCACTTGGTGAAATTCGAACAATGAACTTAGTTATATTGATACCCTGCTCATTTACAATTGCTTCTAATTGCTGGCACAAATTTTTTTCACATCATGATGTTGAACGAATTGATTTAGCAGAGCAGGAAAACTCTAGCATCTGATATATGGTGATAGATTTTCGATTTCCTTTTCGCTTTTGACGTTGTTCCGAGGCCATATAGAAATGGGCTATGGATGTAATCCTTGTTAGAATTAACACCCTTTATTGCCATCCATTAATTACTAGGGAACATTATAAATCACTAAACTATAGGGAACAAGAAAGAAGCTTCATTTTCTTTACTTCCTCTCTTAGTATAGCTTTTCTCTGCCTTTTAGGAAAAGAGGGAAAGAAAGGCTGCTAACTGCCAGGAAGAGCATCGTGAATACTTCGTCGAGACTAGGGAGGTGGGAGATTCGAATCTTTAATAAGTTTTTATAACTAACTTTTGTTGGTTGAAATGTGCTTATAGAATAGAATCATTGTTGGGACTCTGTTGTATGTCCAATGTTATTGGTGATGGTTCCTTTTTTTTATGTCTACAGTAGGTAAAATCCTCTTGTATTCCATCTGTAATTAGTTTTCTTTATTGAAATCTTCTTTAGGCCTATAGTTTTCTTCGTTGAATTCAAGTGAAAGGTTTAAGATATCTTAATCAAAATTGACTGCGGTTTGGACAGTTT

mRNA sequence

ATGAAAGAATCGAAACCGATGAAGCTCAATCTTCATCAGCATCAAGATCACCAAAATGGTCACTTGGCTCCGTTCAAGCTCGCAAAATTGTTCGATCCAGAGGCCTCCTGGGACAAGGACCAACTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTTCTTGGACTTCTGTGGGGATCCATACCTTTGGTTGGAGGCATTTGGTTTCTAATTTTCCTGGCGATATCAACCAGCATCGTACATGGATACTATGCGATGATATTGAAAGTTGATGAAGAAGAATTTGGAGGTCATGGAGCTCTTCTCCAAGAGGGCCTTTTCGCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCACACTTTTGATTGGCAACGAATGAGTTTGCATCCATGAAATCACTTGGAAAAGAGGGAAAGAAAGGCTGCTAACTGCCAGGAAGAGCATCGTGAATACTTCGTCGAGACTAGGGAGGTGGGAGATTCGAATCTTTAATAAGTTTTTATAACTAACTTTTGTTGGTTGAAATGTGCTTATAGAATAGAATCATTGTTGGGACTCTGTTGTATGTCCAATGTTATTGGTGATGGTTCCTTTTTTTTATGTCTACAGTAGGTAAAATCCTCTTGTATTCCATCTGTAATTAGTTTTCTTTATTGAAATCTTCTTTAGGCCTATAGTTTTCTTCGTTGAATTCAAGTGAAAGGTTTAAGATATCTTAATCAAAATTGACTGCGGTTTGGACAGTTT

Coding sequence (CDS)

ATGAAAGAATCGAAACCGATGAAGCTCAATCTTCATCAGCATCAAGATCACCAAAATGGTCACTTGGCTCCGTTCAAGCTCGCAAAATTGTTCGATCCAGAGGCCTCCTGGGACAAGGACCAACTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTTCTTGGACTTCTGTGGGGATCCATACCTTTGGTTGGAGGCATTTGGTTTCTAATTTTCCTGGCGATATCAACCAGCATCGTACATGGATACTATGCGATGATATTGAAAGTTGATGAAGAAGAATTTGGAGGTCATGGAGCTCTTCTCCAAGAGGGCCTTTTCGCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCACACTTTTGA

Protein sequence

MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAHF

Homology

[Close]

BLAST of CmoCh20G004320 vs. ExPASy Swiss-Prot
Match: Q9CQT9 (Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 43/112 (38.39%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 19  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLA 78
           NG L     +K+   +A+W DKD+  DV++W RQ +A+VLG++WG +PL G +    F  
Sbjct: 17  NGALKVSVWSKVLRSDAAWDDKDEFLDVIYWFRQIIALVLGVIWGVLPLRGFLGIAGFCL 76

Query: 79  ISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAHF 130
           I+  +++ Y++  L++DEEE+GG   L +EG   S  LF++ WI+ Y+  H+
Sbjct: 77  INAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVIWIIFYTAIHY 128

[Close]

BLAST of CmoCh20G004320 vs. ExPASy Swiss-Prot
Match: Q9BUV8 (Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 19  NGHLAPFKLAKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGSIPLVGGIWFLIFLA 78
           NG L     +K+   +A+W DKD+  DV++W RQ +AVVLG++WG +PL G +    F  
Sbjct: 17  NGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCL 76

Query: 79  ISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSLAH 129
           I+  +++ Y++  L++DEEE+GG   L +EG   S  LF++     ++  H
Sbjct: 77  INAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVADSFTTGH 127

[Close]

BLAST of CmoCh20G004320 vs. ExPASy TrEMBL
Match: A0A6J1FYD9 (uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111448525 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. ExPASy TrEMBL
Match: A0A6J1JFH8 (uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC111484545 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKESKP+KLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKESKPIKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTSIV+GYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSIVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. ExPASy TrEMBL
Match: A0A1S4E4J0 (uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103502078 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.4e-64
Identity = 123/129 (95.35%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKE+KP+K NLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTS+V+GYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. ExPASy TrEMBL
Match: A0A5D3DK85 (Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001250 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.4e-64
Identity = 123/129 (95.35%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKE+KP+K NLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTS+V+GYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. ExPASy TrEMBL
Match: A0A0A0KFE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190330 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.4e-64
Identity = 122/129 (94.57%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKE+KP+K NLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVILGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTS+V+GYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. NCBI nr
Match: XP_022943955.1 (uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_022943956.1 uncharacterized protein C20orf24 homolog [Cucurbita moschata] >KAG6570695.1 Respirasome Complex Assembly Factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.3 bits (669), Expect = 2.2e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. NCBI nr
Match: XP_023512026.1 (uncharacterized protein C20orf24 homolog [Cucurbita pepo subsp. pepo] >XP_023512027.1 uncharacterized protein C20orf24 homolog [Cucurbita pepo subsp. pepo] >KAG7010542.1 hypothetical protein SDJN02_27336 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTSIV+GYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSIVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. NCBI nr
Match: XP_022986965.1 (uncharacterized protein C20orf24 homolog [Cucurbita maxima] >XP_022986966.1 uncharacterized protein C20orf24 homolog [Cucurbita maxima])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKESKP+KLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKESKPIKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTSIV+GYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSIVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. NCBI nr
Match: XP_038900616.1 (respirasome Complex Assembly Factor 1-like [Benincasa hispida])

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKESKP+K NLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKESKPVKFNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTS+V+GYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. NCBI nr
Match: XP_008464121.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo] >XP_016903137.1 PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo] >TYK24026.1 Rab5-interacting [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 123/129 (95.35%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60
           MKE+KP+K NLHQHQDHQNGHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLL
Sbjct: 1   MKEAKPVKFNLHQHQDHQNGHLAPFKLAKLIDPEASWDKDQLGDVLHWIRQAVAVVLGLL 60

Query: 61  WGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120
           WGSIPLVGGIWFLIFLAISTS+V+GYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW
Sbjct: 61  WGSIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAW 120

Query: 121 ILVYSLAHF 130
           ILVYSLAHF
Sbjct: 121 ILVYSLAHF 129

[Close]

BLAST of CmoCh20G004320 vs. TAIR 10
Match: AT5G59410.1 (Rab5-interacting family protein )

HSP 1 Score: 214.9 bits (546), Expect = 3.7e-56
Identity = 105/130 (80.77%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MKESKPMKLN-LHQHQDHQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGL 60
           MKESK  KLN L Q ++HQN HL+P KLAKLFDP+ASWDKDQLGDVLHWIRQ V ++ GL
Sbjct: 1   MKESKSAKLNQLQQQENHQNAHLSPSKLAKLFDPDASWDKDQLGDVLHWIRQVVGLISGL 60

Query: 61  LWGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLA 120
           LWGSIPLVGGIW ++FLAIS+ IV+GYYAMILKVDEE+FGGH ALLQEGLFAS+TLFLLA
Sbjct: 61  LWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDFGGHAALLQEGLFASLTLFLLA 120

Query: 121 WILVYSLAHF 130
           WILVYSLAHF
Sbjct: 121 WILVYSLAHF 130

[Close]

BLAST of CmoCh20G004320 vs. TAIR 10
Match: AT2G29020.1 (Rab5-interacting family protein )

HSP 1 Score: 190.3 bits (482), Expect = 9.8e-49
Identity = 93/133 (69.92%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MKESKPMKLNLHQHQD----HQNGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVV 60
           MKE K  K +  Q Q     HQN HL  F  AKLFD EASWDKDQLGDVLHWIRQ V ++
Sbjct: 1   MKEGKSSKSSSQQEQHEQIYHQNSHLGSFNFAKLFDSEASWDKDQLGDVLHWIRQVVGLL 60

Query: 61  LGLLWGSIPLVGGIWFLIFLAISTSIVHGYYAMILKVDEEEFGGHGALLQEGLFASITLF 120
            GLLWG+IPLVGGIW L+FLAIS+ IV+GYYA++LK+DEE+FGGH ALLQ+GLFAS++LF
Sbjct: 61  CGLLWGAIPLVGGIWLLLFLAISSGIVYGYYALVLKIDEEDFGGHAALLQDGLFASLSLF 120

Query: 121 LLAWILVYSLAHF 130
           LLAWILVYSL+ F
Sbjct: 121 LLAWILVYSLSSF 133

The following BLAST results are available for this feature:

BLAST of CmoCh20G004320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQT9	1.1e-17	38.39	Respirasome Complex Assembly Factor 1 OS=Mus musculus OX=10090 GN=Rab5if PE=1 SV...	[more]
Q9BUV8	1.2e-14	36.94	Respirasome Complex Assembly Factor 1 OS=Homo sapiens OX=9606 GN=RAB5IF PE=1 SV=...	[more]

BLAST of CmoCh20G004320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYD9	1.1e-66	100.00	uncharacterized protein C20orf24 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JFH8	1.5e-65	98.45	uncharacterized protein C20orf24 homolog OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A1S4E4J0	6.4e-64	95.35	uncharacterized protein C20orf24 homolog OS=Cucumis melo OX=3656 GN=LOC103502078...	[more]
A0A5D3DK85	6.4e-64	95.35	Rab5-interacting OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001...	[more]
A0A0A0KFE5	8.4e-64	94.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190330 PE=4 SV=1	[more]

BLAST of CmoCh20G004320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943955.1	2.2e-66	100.00	uncharacterized protein C20orf24 homolog [Cucurbita moschata] >XP_022943956.1 un...	[more]
XP_023512026.1	1.1e-65	99.22	uncharacterized protein C20orf24 homolog [Cucurbita pepo subsp. pepo] >XP_023512...	[more]
XP_022986965.1	3.2e-65	98.45	uncharacterized protein C20orf24 homolog [Cucurbita maxima] >XP_022986966.1 unch...	[more]
XP_038900616.1	1.2e-64	96.90	respirasome Complex Assembly Factor 1-like [Benincasa hispida]	[more]
XP_008464121.1	1.3e-63	95.35	PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo] >XP_016903137...	[more]

BLAST of CmoCh20G004320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59410.1	3.7e-56	80.77	Rab5-interacting family protein	[more]
AT2G29020.1	9.8e-49	69.92	Rab5-interacting family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029008	Rab5-interacting protein family	PFAM	PF07019	Rab5ip	coord: 45..124 e-value: 1.7E-13 score: 50.9
IPR010742	Rab5-interacting protein	PANTHER	PTHR12906	PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN	coord: 1..129
None	No IPR available	PANTHER	PTHR12906:SF2	BNAA04G16800D PROTEIN	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G004320.1	CmoCh20G004320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006996	organelle organization
cellular_component	GO:0016021	integral component of membrane