CmoCh20G004230 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGAAGAGGAGGCGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGAAGGGGATTTGCCAGAGGTGGCGGCGGCGGAGGAGGAGGAGGAGGAAGGAGTGTGCTTTTGTGATAAGCTTCTTAGCAATGGTAGTTTCGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAGAAGAAAGACTTGGACGAAGAAGAAGAAGAACAACCCGATTCCTTCTTTGAAAGCTTCCATTTTTCTTCCATGTCAGGCGGAAAATTATCTCCGGCGTGCTTTTGA ATGGATGAAGAGGAGGCGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGAAGGGGATTTGCCAGAGGTGGCGGCGGCGGAGGAGGAGGAGGAGGAAGGAGTGTGCTTTTGTGATAAGCTTCTTAGCAATGGTAGTTTCGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAGAAGAAAGACTTGGACGAAGAAGAAGAAGAACAACCCGATTCCTTCTTTGAAAGCTTCCATTTTTCTTCCATGTCAGGCGGAAAATTATCTCCGGCGTGCTTTTGA ATGGATGAAGAGGAGGCGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGAAGGGGATTTGCCAGAGGTGGCGGCGGCGGAGGAGGAGGAGGAGGAAGGAGTGTGCTTTTGTGATAAGCTTCTTAGCAATGGTAGTTTCGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAGAAGAAAGACTTGGACGAAGAAGAAGAAGAACAACCCGATTCCTTCTTTGAAAGCTTCCATTTTTCTTCCATGTCAGGCGGAAAATTATCTCCGGCGTGCTTTTGA MDEEEAFFWEELRRRSEGDLPEVAAAEEEEEEGVCFCDKLLSNGSFEEVLLVEPLLEKKDLDEEEEEQPDSFFESFHFSSMSGGKLSPACF Homology
BLAST of CmoCh20G004230 vs. ExPASy TrEMBL
Match: A0A0A0KBR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190260 PE=4 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17 Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 0
BLAST of CmoCh20G004230 vs. ExPASy TrEMBL
Match: D7KH30 (Uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_470775 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 4.0e-04 Identity = 37/66 (56.06%), Postives = 41/66 (62.12%), Query Frame = 0
BLAST of CmoCh20G004230 vs. ExPASy TrEMBL
Match: B6REL0 (Uncharacterized protein OS=Boechera divaricarpa OX=115915 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 5.3e-04 Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 0
BLAST of CmoCh20G004230 vs. NCBI nr
Match: KAG6570691.1 (hypothetical protein SDJN03_29606, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38 Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0
BLAST of CmoCh20G004230 vs. NCBI nr
Match: KAE8646962.1 (hypothetical protein Csa_020732, partial [Cucumis sativus]) HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16 Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 0
BLAST of CmoCh20G004230 vs. NCBI nr
Match: XP_010414437.1 (PREDICTED: uncharacterized protein LOC104700597 [Camelina sativa]) HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04 Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 0
BLAST of CmoCh20G004230 vs. NCBI nr
Match: XP_020870901.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC9328465 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 54.3 bits (129), Expect = 6.4e-04 Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0
BLAST of CmoCh20G004230 vs. NCBI nr
Match: EFH65910.1 (hypothetical protein ARALYDRAFT_470775, partial [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 53.9 bits (128), Expect = 8.3e-04 Identity = 37/66 (56.06%), Postives = 41/66 (62.12%), Query Frame = 0
BLAST of CmoCh20G004230 vs. TAIR 10
Match: AT1G07485.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 7.3e-06 Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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