CmoCh20G004230 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G004230
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 1999716 .. 1999991 (+)
RNA-Seq ExpressionCmoCh20G004230
SyntenyCmoCh20G004230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAGAGGAGGCGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGAAGGGGATTTGCCAGAGGTGGCGGCGGCGGAGGAGGAGGAGGAGGAAGGAGTGTGCTTTTGTGATAAGCTTCTTAGCAATGGTAGTTTCGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAGAAGAAAGACTTGGACGAAGAAGAAGAAGAACAACCCGATTCCTTCTTTGAAAGCTTCCATTTTTCTTCCATGTCAGGCGGAAAATTATCTCCGGCGTGCTTTTGA

mRNA sequence

ATGGATGAAGAGGAGGCGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGAAGGGGATTTGCCAGAGGTGGCGGCGGCGGAGGAGGAGGAGGAGGAAGGAGTGTGCTTTTGTGATAAGCTTCTTAGCAATGGTAGTTTCGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAGAAGAAAGACTTGGACGAAGAAGAAGAAGAACAACCCGATTCCTTCTTTGAAAGCTTCCATTTTTCTTCCATGTCAGGCGGAAAATTATCTCCGGCGTGCTTTTGA

Coding sequence (CDS)

ATGGATGAAGAGGAGGCGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGAAGGGGATTTGCCAGAGGTGGCGGCGGCGGAGGAGGAGGAGGAGGAAGGAGTGTGCTTTTGTGATAAGCTTCTTAGCAATGGTAGTTTCGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAGAAGAAAGACTTGGACGAAGAAGAAGAAGAACAACCCGATTCCTTCTTTGAAAGCTTCCATTTTTCTTCCATGTCAGGCGGAAAATTATCTCCGGCGTGCTTTTGA

Protein sequence

MDEEEAFFWEELRRRSEGDLPEVAAAEEEEEEGVCFCDKLLSNGSFEEVLLVEPLLEKKDLDEEEEEQPDSFFESFHFSSMSGGKLSPACF
Homology
BLAST of CmoCh20G004230 vs. ExPASy TrEMBL
Match: A0A0A0KBR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190260 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 1  MDEEEAFFWEELRRR-SEGDLPEVAAAEEEEEEGV-CFCDKLLSNGSFEEVLLVEPLLEK 60
          MDEEE FFWEELRRR S+GD P        EEEGV CF DKLLSNG+F EVLLVEPLLE 
Sbjct: 1  MDEEEGFFWEELRRRLSDGDFP-------AEEEGVCCFWDKLLSNGNFAEVLLVEPLLEN 60

Query: 61 KDLDEEEEEQPDSFFESFHFSSM 82
           DL+EE++E  DSFFE+FHFSS+
Sbjct: 61 IDLEEEDDED-DSFFETFHFSSI 75

BLAST of CmoCh20G004230 vs. ExPASy TrEMBL
Match: D7KH30 (Uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_470775 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-04
Identity = 37/66 (56.06%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 21 PEVAAAEEEEEEGVCFCDKLLSN-GSFEEVLLVEPLLEKKDLDEEEEEQPD----SFFES 80
          P     EEEEE      D+L  N G+FEE  LVE LLE  DLDE EEE+ D    SFF+S
Sbjct: 20 PSHDVKEEEEEGTEHLVDELRKNAGAFEEEALVEKLLENLDLDEVEEEEHDAANASFFDS 79

Query: 81 FHFSSM 82
          FHFSSM
Sbjct: 80 FHFSSM 85

BLAST of CmoCh20G004230 vs. ExPASy TrEMBL
Match: B6REL0 (Uncharacterized protein OS=Boechera divaricarpa OX=115915 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-04
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 27 EEEEEEGV-CFCDKLLSN-GSFEEVLLVEPLLEKKDLDEEEEEQPDSFFESFHFSSMS 83
          EEEEEEG     ++LL+N G F E  LVE LLE  DL EEEEE   SFF+SFHFSS++
Sbjct: 26 EEEEEEGTEHLVEELLTNIGDFVEEALVEKLLENFDLQEEEEEAVVSFFDSFHFSSIN 83

BLAST of CmoCh20G004230 vs. NCBI nr
Match: KAG6570691.1 (hypothetical protein SDJN03_29606, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0

Query: 1  MDEEEAFFWEELRRRSEGDLPEVAAA-EEEEEEGVCFCDKLLSNGSFEEVLLVEPLLEKK 60
          MDEEEAFFWEELRRRSEGDLPEVAAA EEEEEEGVCFCDKLLSNGSFEEVLLVEPLLEKK
Sbjct: 1  MDEEEAFFWEELRRRSEGDLPEVAAAVEEEEEEGVCFCDKLLSNGSFEEVLLVEPLLEKK 60

Query: 61 DLD--EEEEEQPDSFFESFHFSSMSGGKLSPACF 92
          DLD  EEEEEQPDSFFESFHFSSMSG KLSPACF
Sbjct: 61 DLDEEEEEEEQPDSFFESFHFSSMSGRKLSPACF 94

BLAST of CmoCh20G004230 vs. NCBI nr
Match: KAE8646962.1 (hypothetical protein Csa_020732, partial [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 1  MDEEEAFFWEELRRR-SEGDLPEVAAAEEEEEEGV-CFCDKLLSNGSFEEVLLVEPLLEK 60
          MDEEE FFWEELRRR S+GD P        EEEGV CF DKLLSNG+F EVLLVEPLLE 
Sbjct: 1  MDEEEGFFWEELRRRLSDGDFP-------AEEEGVCCFWDKLLSNGNFAEVLLVEPLLEN 60

Query: 61 KDLDEEEEEQPDSFFESFHFSS 81
           DL+EE++E  DSFFE+FHFSS
Sbjct: 61 IDLEEEDDED-DSFFETFHFSS 74

BLAST of CmoCh20G004230 vs. NCBI nr
Match: XP_010414437.1 (PREDICTED: uncharacterized protein LOC104700597 [Camelina sativa])

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 2  DEEEAF--FWEELRRRSEGDLPEVAAAEEEEEEGV-CFCDKLLSN-GSFEEVLLVEPLLE 61
          DEEE    F E+L    E +       EEEEEEG+    D+LL+N G F E  LVE LLE
Sbjct: 5  DEEEDLLSFLEKLLEIEEEE------EEEEEEEGIEHLVDELLTNIGDFVEEALVEKLLE 64

Query: 62 KKDLDEEEEEQPDSFFESFHFSSMS 83
            DL+EEEEE   SFF+SFHFSS++
Sbjct: 65 NFDLEEEEEEAVVSFFDSFHFSSIN 83

BLAST of CmoCh20G004230 vs. NCBI nr
Match: XP_020870901.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC9328465 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 54.3 bits (129), Expect = 6.4e-04
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 27 EEEEEEGV-CFCDKLLSN-GSFEEVLLVEPLLEKKDLDEEEEEQPD----SFFESFHFSS 82
          +EEEEEG     D+L  N G+FEE  LVE LLE  DLDE EEE+ D    SFF+SFHFSS
Sbjct: 28 DEEEEEGTEHLVDELRKNAGAFEEEALVEKLLENLDLDEVEEEEHDAANASFFDSFHFSS 87

BLAST of CmoCh20G004230 vs. NCBI nr
Match: EFH65910.1 (hypothetical protein ARALYDRAFT_470775, partial [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 53.9 bits (128), Expect = 8.3e-04
Identity = 37/66 (56.06%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 21 PEVAAAEEEEEEGVCFCDKLLSN-GSFEEVLLVEPLLEKKDLDEEEEEQPD----SFFES 80
          P     EEEEE      D+L  N G+FEE  LVE LLE  DLDE EEE+ D    SFF+S
Sbjct: 20 PSHDVKEEEEEGTEHLVDELRKNAGAFEEEALVEKLLENLDLDEVEEEEHDAANASFFDS 79

Query: 81 FHFSSM 82
          FHFSSM
Sbjct: 80 FHFSSM 85

BLAST of CmoCh20G004230 vs. TAIR 10
Match: AT1G07485.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-06
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 27 EEEEEEGV-CFCDKLLSN-GSFEEVLLVEPLLEKKDLDEEEEEQPD----SFFESFHFSS 82
          E++E+EG     D+L +N G+FEE  LVE LLE  DLDE EE++ D    SFF+S HFSS
Sbjct: 27 EDDEDEGTEHLVDELRTNAGAFEEEALVEKLLENLDLDEVEEDEHDAANASFFDSLHFSS 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KBR34.2e-1769.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190260 PE=4 SV=1[more]
D7KH304.0e-0456.06Uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata OX=81972 ... [more]
B6REL05.3e-0460.34Uncharacterized protein OS=Boechera divaricarpa OX=115915 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6570691.14.0e-3895.74hypothetical protein SDJN03_29606, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646962.11.1e-1670.73hypothetical protein Csa_020732, partial [Cucumis sativus][more]
XP_010414437.13.7e-0451.76PREDICTED: uncharacterized protein LOC104700597 [Camelina sativa][more]
XP_020870901.16.4e-0460.66LOW QUALITY PROTEIN: uncharacterized protein LOC9328465 [Arabidopsis lyrata subs... [more]
EFH65910.18.3e-0456.06hypothetical protein ARALYDRAFT_470775, partial [Arabidopsis lyrata subsp. lyrat... [more]
Match NameE-valueIdentityDescription
AT1G07485.17.3e-0652.46unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G004230.1CmoCh20G004230.1mRNA