CmoCh20G003010 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G003010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUbiquitin-NEDD8-like protein RUB2
LocationCmo_Chr20: 1470560 .. 1472950 (+)
RNA-Seq ExpressionCmoCh20G003010
SyntenyCmoCh20G003010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGATTTTGCCCAATTTTGTCGACACTTGGTTCTTTTGTTATCTTTGTCCATTTTTTTCTCTCTCGCTCTGTTTACTTAAAACGCGGGAAGGAAAGCGATGCAGATCTTTGTCAAAACCCTAACGGGGAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATTGATAATGTCAAAGCCAAGATCCAGGTCTGTAGTTTCTGACTTCCTTTCCTTACTGCCTTTTATGAATTCATTTCTGGCTTACGTTTCTTTGGTTGAATTTCGGTTTTGATTTTCCTGTTGTTTAGTTTTTTTGCCTTTTGATTTGTGTTTAGTCTGATTGCTTGTTTAATTCATCGTTATTATCTTTGTTTTACGACTTGGAGATTCCTTCGCCGTTTGGAAGTTGCTTCATGCCGAGGAGATTTCATTTGTTTTCGTTCTTCTTTTTATCTATGTCTTCGTCGCAGAGGAGATGTTATGGAAACTCCGTTTTTTTTTTTTTCAATCAATTCTCACCAACATATGTTTGCATGAACCATTAGATAGGGGACTAAGAAAATTGGCGCCGATGGTTTCCTTTTTGCTTGTTTGTTGCGATTGTCAGTCAAATTAAGTTCGAGTAGGTTTTATTCCTTTCTGGACACATTTCCTTTATCGTATGTCTGTTTACCATTTAGCTTCTTCCATGGCGTTGTTTTGTTTTCTGGTGTATGTTTTTATTCATGCGGAATCACTTTCCCAACAAAAAAAATTCTGCAAGCTGTTGTGGTCCCCATAGATTTGATATGGCAATTTGATTCCATTGTGCCTTTCTTTATAAAAAAAAAAATCATATTTTGAATTCTGAATTACATTCTTTCTAGCTTCAACCAGGGCAATTAAGCAATTTGGTTTTATCGTTTTGTTTATATATAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGACTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAATCAACCCTTCACCTCGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACTGGGAAGGAAATTGAGATTGACATTGAGCCAACCGACACAATTGATCGTGTCAAGGAGAGGGTGGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGTCTGCATTTACCTTCTTCTCCATTACTTGAACTACAATGACTAAATCTTTCTATAGGCATTTGTATATGTGGATACCTTGTTGAATCTCCCTCAAACGCATCAGTATGCCTTCTCTGATTAAGAATAGAATTTGGCGTGGAGCTTTCCTACTTAGCATAGGGTTCATGAAGTTGGAGTGTTTTAGATTCCAGCATTTATTTTATGCATGACGTGTTATTTTAAAATGTATTGACATAGCACAATTCAAACAACGTAAGGACAGGTCCATTGCTAATTTGAGAAGATTTCAGTGGATTAGAAATCTGGTTCAAGGATATATCTCCACCCCCATATTTGGAGCTCAGATAATGGACATCTCTATTTAGTATTTTATTGTATGTTAACATGTTTCATGTTTTTGAAGTTTTATTCCAAGTAGTGAGATTTACACTTAGAGAATCTTGATATAGATTGACAGAAGATTTTGCATTATTGCTTATGTGCCTGAAAATTGATAGTTTGATAGAGTTAGTCACGTTACTTAAGTTTAATTTGCCCATGATTTCTAGGCTCTCTGGTTAGCCTTCCCGTGCTCTTTCTTCTAATATCTGTTTTATGCTATTATTTTCTGGGGTGGCGTTAAATATATCATAATACCCACGTAATGTGAATTAGTGAGTCAACTATTCTGAATTCCATCAAAATTCATTCTTCTATTTCGTATTGTCTTCTATGCACTCTGATTTGTTACCGACTAAACGGATTAATGGGATTTGCTTATTGCTTATGGAACTTAAAATTTGAAAGTGCACTCCGTTTTGCAGGCTGATTTATGCCGGCAAACAGCTAGCAGATGACAAGACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTCGTGCTCGCCCTGAGGGGTGGTGGTTACCTGTAAAAGCATTTATCTATCACATCCTGAAATTCTGAATTTTCAGTTTTATTTTGTTGGCGTGGATTAATGGAAAATATTTGAGCCCAAGCTTACTTTATTAATTACTCAGTTATTCCCAAAGTTCTTCAATTTTTCATTGGGGGAATCATGCTTAATTTATCCTGGTTGTTATACTTTCATTTTTATGGATCCTCTCCTGTCTATGACTCGCGCTTGTGATACAGGCGCGTGTTTGGTCGTCCTTCTCCAGGTGCGCTTCATACTCTTTTCTTTTCTCTTATTATAACGGATAGTACTAGAGATAGATAATTA

mRNA sequence

CGGATTTTGCCCAATTTTGTCGACACTTGGTTCTTTTGTTATCTTTGTCCATTTTTTTCTCTCTCGCTCTGTTTACTTAAAACGCGGGAAGGAAAGCGATGCAGATCTTTGTCAAAACCCTAACGGGGAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATTGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGACTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAATCAACCCTTCACCTCGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACTGGGAAGGAAATTGAGATTGACATTGAGCCAACCGACACAATTGATCGTGTCAAGGAGAGGGTGGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTGATTTATGCCGGCAAACAGCTAGCAGATGACAAGACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTCGTGCTCGCCCTGAGGGGTGGTGGTTACCTGTAAAAGCATTTATCTATCACATCCTGAAATTCTGAATTTTCAGTTTTATTTTGTTGGCGTGGATTAATGGAAAATATTTGAGCCCAAGCTTACTTTATTAATTACTCAGTTATTCCCAAAGTTCTTCAATTTTTCATTGGGGGAATCATGCTTAATTTATCCTGGTTGTTATACTTTCATTTTTATGGATCCTCTCCTGTCTATGACTCGCGCTTGTGATACAGGCGCGTGTTTGGTCGTCCTTCTCCAGGTGCGCTTCATACTCTTTTCTTTTCTCTTATTATAACGGATAGTACTAGAGATAGATAATTA

Coding sequence (CDS)

ATGCAGATCTTTGTCAAAACCCTAACGGGGAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATTGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGACTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAATCAACCCTTCACCTCGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACTGGGAAGGAAATTGAGATTGACATTGAGCCAACCGACACAATTGATCGTGTCAAGGAGAGGGTGGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTGATTTATGCCGGCAAACAGCTAGCAGATGACAAGACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTCGTGCTCGCCCTGAGGGGTGGTGGTTACCTGTAA

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL
Homology
[Close]
BLAST of CmoCh20G003010 vs. ExPASy Swiss-Prot
Match: P0C073 (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 294.7 bits (753), Expect = 6.3e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. ExPASy Swiss-Prot
Match: Q9SHE7 (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 SV=3)

HSP 1 Score: 294.3 bits (752), Expect = 8.2e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. ExPASy Swiss-Prot
Match: P0C030 (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 294.3 bits (752), Expect = 8.2e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. ExPASy Swiss-Prot
Match: P0C031 (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB2 PE=2 SV=2)

HSP 1 Score: 294.3 bits (752), Expect = 8.2e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. ExPASy Swiss-Prot
Match: Q8RUC6 (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 SV=3)

HSP 1 Score: 291.2 bits (744), Expect = 6.9e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDY IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. ExPASy TrEMBL
Match: A0A6J1FRW0 (ubiquitin-NEDD8-like protein RUB2 OS=Cucurbita moschata OX=3662 GN=LOC111448250 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.2e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 156
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 155

[Close]
BLAST of CmoCh20G003010 vs. ExPASy TrEMBL
Match: A0A6J1I1R0 (ubiquitin-NEDD8-like protein RUB2 OS=Cucurbita maxima OX=3661 GN=LOC111469712 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.2e-78
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 156
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 155

[Close]
BLAST of CmoCh20G003010 vs. ExPASy TrEMBL
Match: A0A6J1G8J7 (ubiquitin-NEDD8-like protein RUB2 OS=Cucurbita moschata OX=3662 GN=LOC111451731 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.2e-78
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 156
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 155

[Close]
BLAST of CmoCh20G003010 vs. ExPASy TrEMBL
Match: A0A2G5CPW7 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_04100049v1 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.7e-77
Identity = 152/154 (98.70%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGY 155
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGGGY
Sbjct: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGGY 154

[Close]
BLAST of CmoCh20G003010 vs. ExPASy TrEMBL
Match: A0A397Z8D4 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA05T19945Z PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.1e-77
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: XP_022943496.1 (ubiquitin-NEDD8-like protein RUB2 [Cucurbita moschata] >XP_023513405.1 ubiquitin-NEDD8-like protein RUB2 [Cucurbita pepo subsp. pepo] >KAG6570589.1 Ubiquitin-NEDD8-like protein RUB1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.8 bits (769), Expect = 6.7e-78
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 156
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 155

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: XP_022948030.1 (ubiquitin-NEDD8-like protein RUB2 [Cucurbita moschata] >XP_022970866.1 ubiquitin-NEDD8-like protein RUB2 [Cucurbita maxima] >XP_023534554.1 ubiquitin-NEDD8-like protein RUB2 [Cucurbita pepo subsp. pepo] >KAG6604707.1 Ubiquitin-NEDD8-like protein RUB2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.4 bits (768), Expect = 8.7e-78
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 156
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 155

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: PIA33361.1 (hypothetical protein AQUCO_04100049v1 [Aquilegia coerulea])

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 152/154 (98.70%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGY 155
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGGGY
Sbjct: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGGY 154

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: XP_024977097.1 (ubiquitin-NEDD8-like protein RUB2 [Cynara cardunculus var. scolymus])

HSP 1 Score: 297.0 bits (759), Expect = 9.6e-77
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGYL 156
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG L
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGNL 155

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: XP_010540689.1 (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Tarenaya hassleriana])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. TAIR 10
Match: AT1G31340.1 (related to ubiquitin 1 )

HSP 1 Score: 294.3 bits (752), Expect = 5.8e-80
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. TAIR 10
Match: AT2G35635.1 (ubiquitin 7 )

HSP 1 Score: 291.2 bits (744), Expect = 4.9e-79
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDY IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. TAIR 10
Match: AT5G03240.1 (polyubiquitin 3 )

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-64
Identity = 124/154 (80.52%), Postives = 136/154 (88.31%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGY 155
           +AGKQL D +T  DYNI+  S LHLVL LRGG +
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 306

[Close]
BLAST of CmoCh20G003010 vs. TAIR 10
Match: AT5G20620.1 (ubiquitin 4 )

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-64
Identity = 124/154 (80.52%), Postives = 136/154 (88.31%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGY 155
           +AGKQL D +T  DYNI+  S LHLVL LRGG +
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 382

[Close]
BLAST of CmoCh20G003010 vs. TAIR 10
Match: AT5G03240.2 (polyubiquitin 3 )

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-64
Identity = 124/154 (80.52%), Postives = 136/154 (88.31%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGY 155
           +AGKQL D +T  DYNI+  S LHLVL LRGG +
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 306

The following BLAST results are available for this feature:
BLAST of CmoCh20G003010 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0C0736.3e-79100.00Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE... [more]
Q9SHE78.2e-7999.34Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 S... [more]
P0C0308.2e-7999.34Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RU... [more]
P0C0318.2e-7999.34Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RU... [more]
Q8RUC66.9e-7898.68Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 S... [more]
BLAST of CmoCh20G003010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FRW03.2e-78100.00ubiquitin-NEDD8-like protein RUB2 OS=Cucurbita moschata OX=3662 GN=LOC111448250 ... [more]
A0A6J1I1R04.2e-7899.35ubiquitin-NEDD8-like protein RUB2 OS=Cucurbita maxima OX=3661 GN=LOC111469712 PE... [more]
A0A6J1G8J74.2e-7899.35ubiquitin-NEDD8-like protein RUB2 OS=Cucurbita moschata OX=3662 GN=LOC111451731 ... [more]
A0A2G5CPW72.7e-7798.70Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_04100049v1 PE=4... [more]
A0A397Z8D46.1e-7799.35Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA05T19945Z PE=4 SV=... [more]
BLAST of CmoCh20G003010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943496.16.7e-78100.00ubiquitin-NEDD8-like protein RUB2 [Cucurbita moschata] >XP_023513405.1 ubiquitin... [more]
XP_022948030.18.7e-7899.35ubiquitin-NEDD8-like protein RUB2 [Cucurbita moschata] >XP_022970866.1 ubiquitin... [more]
PIA33361.15.6e-7798.70hypothetical protein AQUCO_04100049v1 [Aquilegia coerulea][more]
XP_024977097.19.6e-7798.71ubiquitin-NEDD8-like protein RUB2 [Cynara cardunculus var. scolymus][more]
XP_010540689.11.3e-7699.35PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Tarenaya hassleriana][more]
BLAST of CmoCh20G003010 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G31340.15.8e-8099.34related to ubiquitin 1 [more]
AT2G35635.14.9e-7998.68ubiquitin 7 [more]
AT5G03240.11.2e-6480.52polyubiquitin 3 [more]
AT5G20620.11.2e-6480.52ubiquitin 4 [more]
AT5G03240.21.2e-6480.52polyubiquitin 3 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956Ubiquitin domainPRINTSPR00348UBIQUITINcoord: 53..74
score: 91.18
coord: 11..31
score: 85.2
coord: 32..52
score: 95.05
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 77..148
e-value: 1.3E-27
score: 107.7
coord: 1..72
e-value: 3.0E-35
score: 133.1
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 3..74
e-value: 5.9E-34
score: 115.7
coord: 79..150
e-value: 3.4E-28
score: 97.2
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 77..152
score: 26.467207
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 1..76
score: 30.452106
NoneNo IPR availableGENE3D3.10.20.90coord: 78..154
e-value: 3.2E-35
score: 122.1
coord: 1..77
e-value: 8.4E-47
score: 159.4
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..152
NoneNo IPR availablePANTHERPTHR10666:SF364SUBFAMILY NOT NAMEDcoord: 1..152
NoneNo IPR availableCDDcd01803Ubl_ubiquitincoord: 1..76
e-value: 1.51392E-51
score: 156.836
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 27..52
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 103..128
IPR038738Nedd8-like ubiquitinCDDcd01806Ubl_NEDD8coord: 79..152
e-value: 1.6382E-47
score: 146.765
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 79..153
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G003010.1CmoCh20G003010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding