CmoCh20G002670 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G002670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUbiquinone biosynthesis O-methyltransferase, mitochondrial
LocationCmo_Chr20: 1308905 .. 1311436 (-)
RNA-Seq ExpressionCmoCh20G002670
SyntenyCmoCh20G002670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCAAGTCAAAGTTGGAATATCCAAAGGACATTGTGAAAAAGAGATAAGAGTTGCTATCAAAATTCCAAAACAACATGTCGTTCTCAGTGCCATTATTGAAGATGGTTCCACACGCTTGTGCAAAGCGAGACAACTCCTGACATTCATTTGATCACACATGGCCTGTGCTGATTTCTTTAAAACCCTTACAAGGCTGCAGCTTTCCCAATGAAGGATCCAAACTTTGTCACTGTATTATCACGAGAGCCATCCGATCATAACGTTTCTTATAAAGGAGTGGAAACTTCTCCCTAACATATGTGTTTTAAAACTCTGAGGCTAACGACAATACATAACGAGCCAAAATAGACAATATTTGATAGTGGTGGGCTTGTACTGTTACAAATGGTATTTGAGCCAGATACAGGGCGATGTGCCAGTGAGGACGCTAGCTCCGAAGGGGTGGATTGTGAGATTCCACGTTGGTTGGAGAGGGAAACAAAACACTTCTTATAAGAATGTGGAAACTTCTCCCTAGCACACATGTTTTAAAACCATGACGCTGACAGTGATACGTAACATGCCAAAATGGACAATATTTGCTAGTGGAAGACTTGGGCTATTTCAAATGGTATTAGAGCCAGACATCGGGCGGAGTGCCAGTGAGGACGCTTGGCTCCCAAGGGAGTGGATTGTGAGATTTCACATTGGTTGGAGAGAGAAATAAAACACTTATTATAAGGGCGTGAAAACTTCTCCCTAGCACACATGTTTTAAAACCGTGAGGCTGATGACGATACGTCATAGGCCAAAACAGACCGTATTTACTAGCAGTAGGTTGTACGATTACACCACGAAACAAAAAAAACAAGAAAAATGAGTGAAAAAGAGGAGTTAGAAAATTTGAAAAAGCAAACAAGTGGGGCACATTGGGACAGGAACAGTAGAGGTTGATGAAACAAGACCATCAGAAGAAACTGACTCCAAAAGGACACTTGAATTTTGTAGGAGCTGGAAAGCACCCACCAAACTCAAAACAAAATTTACTTTAACATTTCACAAACAGTGATAAAAAGTAAAAATATGTTACATAGTATCATTACTCTCTTATTCTCTGTAGTTTTTCACTTTCTGAAAGTTACCTCTTTACTGCAGAACTTTGTTTTTACTTTTACATAATATGAATGGAAACTTACCCTTTTTTCATGGCAATGGAATATGACTGTTGATGAATGCTGTTCAAACAAAATTCAACCATTTTATGTTCGTCGGGATAGATTTCCGATCTACCAACTATTTGAAATGTTGGCACCTTACTAAATCACAAGTTTAATACCTTGATCTCGACTTTGGTGTTAGGTTATATGATTTATCTTATTTCATTAAAGTTTCGATAAAAGTTTAAATTTATTGTAATCGAACGAGTTAGTGCATGTAGTAAATCTTGTCTTAAGTCTTTCGTAACGCCATTTTCACCCCATTGATATTGGTGACTTGGTTGAGAAATTAGCGTAGTGATCCAGTAAAGTTTGAAAATAAATTGTGACACCCGAGTAAATAAAGAACACATAAATTAACCGAGACCATGTCCGAATAAGAGCAATCTTGAATATATGATAAGAATAGTTTAAAATAACTGAAATTTTCGGTGACTCGAATTTTATAGTTAATCGTGTGTTTTGCTCAGTGGAGTTGTATGTAAATACTATTAAATATTATTTGTGTTGTTATTTAGAGGTAAAATTGATTTATTTTTTTATTAAAAATGCTTTTAAAATGTAAATATGTAAGGCCTTAATATTTCACGTGTAAGGGCCTTTCCCTCCAAATTTCACCTTCCAGTTTCTCCCGCTCGCGGCTTTCCGCATCGACCAGCTCTAAGCTCCACCGTTTTCCATGGCATCGGAGTTCCTGTTACCTACATCCAAATCGTGCTCCTTGAAGTCTGTTCCATATCAGGCACTTCTCTGATGCGTCCTTGCCGCCGCTCTCTCCCGACGGTTCTTCTCAAAATGCAGAGCTGCAAAGTGCGCATTGTCCTGAGAAAATAGTCAGAAAAGCTACGGCTACCTTGTCTGTGAATCAACTCGAGCTTTCCAGATTCTCCGCCATTGCCGAAACCTAGTAATCCTCGAATTCTCTAAATAGATGCATTGTTTAGATGATTTCTTTTCGTTGAAGAAATAGAGTTGGCGATTTAGAAATTTGAAAGTATTTGGTAGCGTATAGGGTTTAATTCTTGTTGCAAATGTAGGGAATATGATATTTAGATGGTTGGAGATCTTTTAGGTTTCTCTCCTTCATTTTACTGGAAATCAATCCTTTGTCACCTGGTCCGATTCTTTTACACACACACGACTGTGCAACGAAACTTTCATAACATTTTATCACTACATATCGAATCGCGAGGCTTGAAGGTTCTATATAGATGGCATGTATAACCTTTATTAATCCTTATGTAGGATCATATATCTAGTGCCAATCCAAGCAGAGACCTCTTATAAATAAGAATGAATTCTTTTGATATTTAGTGTGTTGCAGTCTCTAA

mRNA sequence

ATGGGTCAAGTCAAAGTTGGAATATCCAAAGGACATTGTGAAAAAGAGATAAGAGTTGCTATCAAAATTCCAAAACAACATGTCGTTCTCAGTGCCATTATTGAAGATGGTTCCACACGCTTGCACTTCTCTGATGCGTCCTTGCCGCCGCTCTCTCCCGACGGTTCTTCTCAAAATGCAGAGCTGCAAAGTGCGCATTGTCCTGAGAAAATAGTCAGAAAAGCTACGGCTACCTTGTCTGTGAATCAACTCGAGCTTTCCAGATTCTCCGCCATTGCCGAAACCTATCTCTAA

Coding sequence (CDS)

ATGGGTCAAGTCAAAGTTGGAATATCCAAAGGACATTGTGAAAAAGAGATAAGAGTTGCTATCAAAATTCCAAAACAACATGTCGTTCTCAGTGCCATTATTGAAGATGGTTCCACACGCTTGCACTTCTCTGATGCGTCCTTGCCGCCGCTCTCTCCCGACGGTTCTTCTCAAAATGCAGAGCTGCAAAGTGCGCATTGTCCTGAGAAAATAGTCAGAAAAGCTACGGCTACCTTGTCTGTGAATCAACTCGAGCTTTCCAGATTCTCCGCCATTGCCGAAACCTATCTCTAA

Protein sequence

MGQVKVGISKGHCEKEIRVAIKIPKQHVVLSAIIEDGSTRLHFSDASLPPLSPDGSSQNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETYL
Homology
[Close]
BLAST of CmoCh20G002670 vs. ExPASy TrEMBL
Match: A0A6J1I023 (Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111469658 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 42  HFSDASLPPLSPDGSS----QNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETY 97
           HFSDAS PPLSP  SS    QNAELQS + PE IVR A+AT SVNQ EL++FSAIA+T+
Sbjct: 42  HFSDASSPPLSPAASSSAPPQNAELQSVNRPEDIVRNASATSSVNQFELAKFSAIADTW 100

[Close]
BLAST of CmoCh20G002670 vs. ExPASy TrEMBL
Match: A0A6J1G5C7 (Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111450999 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 43  FSDASLPPLSPDGSS----QNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETY 97
           FSDAS PPLSP  SS    QNAELQS + PE+IVR A+AT SVNQ EL++FSAIA+T+
Sbjct: 43  FSDASSPPLSPAASSSAPPQNAELQSTNRPEEIVRNASATSSVNQFELAKFSAIADTW 100

[Close]
BLAST of CmoCh20G002670 vs. ExPASy TrEMBL
Match: A0A5A7UM68 (Ubiquinone biosynthesis O-methyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00100 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.4e-08
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 42 HFSDASLPPLSPDGSS----QNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETY 97
          HFSDAS PPLSP GSS    QN ELQ+A  PEK+   A+ T SVNQLEL++FSAI+ET+
Sbjct: 37 HFSDASSPPLSPAGSSLPPPQNVELQTAPQPEKMNINASTTSSVNQLELAKFSAISETW 95

[Close]
BLAST of CmoCh20G002670 vs. ExPASy TrEMBL
Match: A0A1S3C334 (Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103496335 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.4e-08
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 42 HFSDASLPPLSPDGSS----QNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETY 97
          HFSDAS PPLSP GSS    QN ELQ+A  PEK+   A+ T SVNQLEL++FSAI+ET+
Sbjct: 37 HFSDASSPPLSPAGSSLPPPQNVELQTAPQPEKMNINASTTSSVNQLELAKFSAISETW 95

[Close]
BLAST of CmoCh20G002670 vs. ExPASy TrEMBL
Match: A0A0A0KBI6 (Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Cucumis sativus OX=3659 GN=COQ3 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 42 HFSDASLPPLSPDGSS----QNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETY 97
          HFSD S P LSP GSS    QN EL++A  PEK+   A+ T SVNQ+EL++FSAI++T+
Sbjct: 37 HFSDVSSPTLSPAGSSSPPPQNVELKTAPQPEKMNINASTTSSVNQIELAKFSAISDTW 95

[Close]
BLAST of CmoCh20G002670 vs. NCBI nr
Match: KAG6570561.1 (Receptor like protein 29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 8.3e-18
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 42  HFSDASLPPLSPDGSSQNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAET 96
           HFSDAS PPLSPDGSSQN EL+SAHCPEKIVRKATATLSVNQLELSRFSAIAET
Sbjct: 455 HFSDASSPPLSPDGSSQNVELRSAHCPEKIVRKATATLSVNQLELSRFSAIAET 508

[Close]
BLAST of CmoCh20G002670 vs. NCBI nr
Match: XP_022970767.1 (ubiquinone biosynthesis O-methyltransferase, mitochondrial [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-09
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 42  HFSDASLPPLSPDGSS----QNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETY 97
           HFSDAS PPLSP  SS    QNAELQS + PE IVR A+AT SVNQ EL++FSAIA+T+
Sbjct: 42  HFSDASSPPLSPAASSSAPPQNAELQSVNRPEDIVRNASATSSVNQFELAKFSAIADTW 100

[Close]
BLAST of CmoCh20G002670 vs. NCBI nr
Match: XP_023532537.1 (ubiquinone biosynthesis O-methyltransferase, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.9 bits (172), Expect = 7.0e-09
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 42  HFSDASLPPLSPDGSS----QNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETY 97
           HFSDAS PPLSP  SS    QNAELQS + PE IVR A+AT SVNQ EL++FSAIA+T+
Sbjct: 43  HFSDASSPPLSPAASSSAPPQNAELQSTNRPEGIVRNASATSSVNQFELAKFSAIADTW 101

[Close]
BLAST of CmoCh20G002670 vs. NCBI nr
Match: XP_038902130.1 (ubiquinone biosynthesis O-methyltransferase, mitochondrial [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 42 HFSDASLPPLSPDGSS----QNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETY 97
          HFSDAS P LSP GSS    QNAELQ+A  PEKI R A+ T SVNQLELS+F+AIA+T+
Sbjct: 41 HFSDASSPQLSPAGSSLAPPQNAELQTASRPEKIDRNASTTSSVNQLELSKFAAIADTW 99

[Close]
BLAST of CmoCh20G002670 vs. NCBI nr
Match: KAG7034867.1 (Ubiquinone biosynthesis O-methyltransferase, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-08
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 43  FSDASLPPLSPDGSS----QNAELQSAHCPEKIVRKATATLSVNQLELSRFSAIAETY 97
           FSDAS PPLSP  SS    QNAELQS + PE+IVR A+AT SVNQ EL++FSAIA+T+
Sbjct: 43  FSDASSPPLSPAASSSAPPQNAELQSTNRPEEIVRNASATSSVNQFELAKFSAIADTW 100

The following BLAST results are available for this feature:
BLAST of CmoCh20G002670 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G002670 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I0232.6e-0967.80Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Cucurbita maxima O... [more]
A0A6J1G5C71.3e-0867.24Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Cucurbita moschata... [more]
A0A5A7UM686.4e-0864.41Ubiquinone biosynthesis O-methyltransferase OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3C3346.4e-0864.41Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Cucumis melo OX=36... [more]
A0A0A0KBI61.7e-0555.93Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Cucumis sativus OX... [more]
BLAST of CmoCh20G002670 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570561.18.3e-1894.44Receptor like protein 29, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022970767.15.4e-0967.80ubiquinone biosynthesis O-methyltransferase, mitochondrial [Cucurbita maxima][more]
XP_023532537.17.0e-0967.80ubiquinone biosynthesis O-methyltransferase, mitochondrial [Cucurbita pepo subsp... [more]
XP_038902130.11.6e-0867.80ubiquinone biosynthesis O-methyltransferase, mitochondrial [Benincasa hispida][more]
KAG7034867.12.7e-0867.24Ubiquinone biosynthesis O-methyltransferase, mitochondrial [Cucurbita argyrosper... [more]
BLAST of CmoCh20G002670 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G002670.1CmoCh20G002670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0006744 ubiquinone biosynthetic process
cellular_component GO:0031314 extrinsic component of mitochondrial inner membrane
molecular_function GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
molecular_function GO:0008689 3-demethylubiquinone-9 3-O-methyltransferase activity
molecular_function GO:0004395 hexaprenyldihydroxybenzoate methyltransferase activity