CmoCh20G002170 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G002170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cell wall integrity and stress response component 1
Location	Cmo_Chr20: 1045374 .. 1045917 (-)
RNA-Seq Expression	CmoCh20G002170
Synteny	CmoCh20G002170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTCTTCTTCCCCAACCTTTCTTCCACATTTCAATATGAAGAAATCGGGTTTCATCGCCGCCTCCGTCGTCGCCGCCGCCGAGTCTGCCTCCCCCAGTTCCTCCACCATTTTCTGCAACCTAAAAGTTCAGCTCCCTCGGCAGGTAAGCCTTGGTCAAAGATTCATCGATTTCCCTCTTCGAAAAATTCCCAAGTCTCAGTTTGTTCTTCGTAAATTTCTGGTCTTTCTTTTGCTGTTTTTTGAGATGTGGGAAGTTTGAACATGCAGGAGGGGAAGGAAGGAGAGAATCCGTCGTCCTCGGCGGATAAATTTGCTCCCAAATTTGATGGATTAAAATTTATTAAGACTCTGGTTACGGCTCACAGATAAACTGCCCCCGGGAAGGCGACGGCGATGGCCGGACTGAACTTCGTATACTGCCTTATTTTGTTTGTTATTTTTGTCGTCGAAACTCTCACATTTTGCACATTCAAGATAGCAAATTGAATAATAATTTTAGTTTAAAGTACAGATTTTTCTCGTCGAGAATCCTTCACCGCTC

mRNA sequence

CCTTTCTTCTTCCCCAACCTTTCTTCCACATTTCAATATGAAGAAATCGGGTTTCATCGCCGCCTCCGTCGTCGCCGCCGCCGAGTCTGCCTCCCCCAGTTCCTCCACCATTTTCTGCAACCTAAAAGTTCAGCTCCCTCGGCAGGAGGGGAAGGAAGGAGAGAATCCGTCGTCCTCGGCGGATAAATTTGCTCCCAAATTTGATGGATTAAAATTTATTAAGACTCTGGTTACGGCTCACAGATAAACTGCCCCCGGGAAGGCGACGGCGATGGCCGGACTGAACTTCGTATACTGCCTTATTTTGTTTGTTATTTTTGTCGTCGAAACTCTCACATTTTGCACATTCAAGATAGCAAATTGAATAATAATTTTAGTTTAAAGTACAGATTTTTCTCGTCGAGAATCCTTCACCGCTC

Coding sequence (CDS)

ATGAAGAAATCGGGTTTCATCGCCGCCTCCGTCGTCGCCGCCGCCGAGTCTGCCTCCCCCAGTTCCTCCACCATTTTCTGCAACCTAAAAGTTCAGCTCCCTCGGCAGGAGGGGAAGGAAGGAGAGAATCCGTCGTCCTCGGCGGATAAATTTGCTCCCAAATTTGATGGATTAAAATTTATTAAGACTCTGGTTACGGCTCACAGATAA

Protein sequence

MKKSGFIAASVVAAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFDGLKFIKTLVTAHR

Homology

[Close]

BLAST of CmoCh20G002170 vs. ExPASy TrEMBL
Match: A0A6J1I1D6 (uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKKSGFIAASVVA--AAESASPSSSTIFCNLKVQLPRQEGKE-GENPSSSADKFAPKFDG 60
          MKKSGFIAAS+ A  AA SASPSSST+FC+ K+QLPRQE KE GEN SSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASIAAASAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LKFIKTLVTAHR 70
          L+FI+TLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of CmoCh20G002170 vs. ExPASy TrEMBL
Match: A0A6J1CHM8 (uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011258 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MKKSGFIAASV--VAAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFDGL 60
          MKKS FIAASV   +AA SASPSSST  CN KVQ PRQEGK  EN SSSADKFAPKFDGL
Sbjct: 1  MKKSAFIAASVAGASAAVSASPSSSTFVCNPKVQFPRQEGKVEENSSSSADKFAPKFDGL 60

Query: 61 KFIKTLVTAHR 70
          +FI+TLVTAHR
Sbjct: 61 RFIETLVTAHR 71

[Close]

BLAST of CmoCh20G002170 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MKKSGFIAASVVAAAESA--SPSSSTIFCNLKVQLPRQE---GKEGENP----SSSADKF 60
          MKKSGF AASV AA+ +A  +PSSS   CN K+QL R E   GK+ EN     SSSAD+F
Sbjct: 1  MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSADRF 60

Query: 61 APKFDGLKFIKTLVTAHR 70
          AP+FDGL+FI+TLVTAHR
Sbjct: 61 APRFDGLRFIETLVTAHR 78

[Close]

BLAST of CmoCh20G002170 vs. ExPASy TrEMBL
Match: A0A7J0DRV4 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0072510 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-11
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 1  MKKSGFIAASVVAAAESASPSSSTIFCNLKVQLPRQ--EGKEGENPSSSADKFAPKFDGL 60
          MKKSG +AA+ VAAA S+SP SST+  N   +  R+   GK  EN   S+DKFAP+FDGL
Sbjct: 1  MKKSGLVAAASVAAAVSSSPCSSTLITNSDSRRSREAVSGKSSENSKDSSDKFAPRFDGL 60

Query: 61 KFIKTLVTAHR 70
          +FI+TLVTAHR
Sbjct: 61 RFIETLVTAHR 71

[Close]

BLAST of CmoCh20G002170 vs. ExPASy TrEMBL
Match: A0A5D2VES8 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D04G167600v1 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1  MKKSGFIAASVVAAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSS----ADKFAPKFD 60
          MKKSG  AASVVAA+ SA   SS   CN   QL  +E KE EN +++     +KFAP+FD
Sbjct: 1  MKKSGLFAASVVAASASA---SSNFTCNSNFQLSSEEKKEHENSANTKPAPTEKFAPRFD 60

Query: 61 GLKFIKTLVTAHR 70
          GL+FI+TLVTAHR
Sbjct: 61 GLRFIETLVTAHR 70

[Close]

BLAST of CmoCh20G002170 vs. NCBI nr
Match: KAG6570510.1 (hypothetical protein SDJN03_29425, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MKKSGFIAASVV-AAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFDGLK 60
          MKKSGFIAASVV AAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFDGLK
Sbjct: 1  MKKSGFIAASVVAAAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFDGLK 60

Query: 61 FIKTLVTAHR 70
          FIKTLVTAHR
Sbjct: 61 FIKTLVTAHR 70

[Close]

BLAST of CmoCh20G002170 vs. NCBI nr
Match: KAG7010372.1 (hypothetical protein SDJN02_27165, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 3.4e-26
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MKKSGFIAASVV----AAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFD 60
          MKKSGFIAASVV    AAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFD
Sbjct: 1  MKKSGFIAASVVAAAAAAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFD 60

Query: 61 GLKFIKTLVTAHR 70
          GLKFIKTLVTAHR
Sbjct: 61 GLKFIKTLVTAHR 73

[Close]

BLAST of CmoCh20G002170 vs. NCBI nr
Match: XP_038902353.1 (uncharacterized protein LOC120088987 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 3.9e-22
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MKKSGFIAASVVAAAESASPSSSTIFCNLKVQLPRQEGKEGENPSSSADKFAPKFDGLKF 60
          MKKSGFIAASV AAA SASPSSST+ CN KVQ PRQEGKEGEN SSS DKFAPKFDGL+F
Sbjct: 1  MKKSGFIAASVAAAAVSASPSSSTLVCNPKVQFPRQEGKEGENSSSSTDKFAPKFDGLRF 60

Query: 61 IKTLVTAHR 70
          I+TLVTAHR
Sbjct: 61 IETLVTAHR 69

[Close]

BLAST of CmoCh20G002170 vs. NCBI nr
Match: KAG7034915.1 (hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKKSGFIAASVVAAAE--SASPSSSTIFCNLKVQLPRQEGKE-GENPSSSADKFAPKFDG 60
          MKKSGFIAASV AAA   SASPSSST+FC+ K+QLPRQE KE GEN SSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASVTAAAAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LKFIKTLVTAHR 70
          L+FI+TLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of CmoCh20G002170 vs. NCBI nr
Match: XP_022970726.1 (uncharacterized protein LOC111469626 [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MKKSGFIAASVVA--AAESASPSSSTIFCNLKVQLPRQEGKE-GENPSSSADKFAPKFDG 60
          MKKSGFIAAS+ A  AA SASPSSST+FC+ K+QLPRQE KE GEN SSSADKFAPKFDG
Sbjct: 1  MKKSGFIAASIAAASAAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFDG 60

Query: 61 LKFIKTLVTAHR 70
          L+FI+TLVTAHR
Sbjct: 61 LRFIETLVTAHR 72

[Close]

BLAST of CmoCh20G002170 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-10
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 1  MKKSGFIAASVVAAA-----ESASPSSSTIFCNLKVQLPRQEGKE------GENPSSSAD 60
          MKK+G IAAS+  AA      + S ++S  F + +  L RQE KE      G +     +
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGGDE 60

Query: 61 KFAPKFDGLKFIKTLVTAHR 70
          KFAP+FDGL+FI+TLVTAHR
Sbjct: 61 KFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of CmoCh20G002170 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1  MKKSGFIAASVVAAAESASPSSSTIFCNLKVQLPRQEGKEGEN-PSSSADKFAPKFDGLK 60
          MK S  + ASV+A + +A  SSS         LP    K  E+  ++ +D F P+FDGL+
Sbjct: 1  MKVSSGVVASVIAVSTAALSSSSI--------LPPVSPKVWESRKTNGSDNFEPRFDGLR 60

Query: 61 FIKTLVTAHR 70
          FI+TLVTAHR
Sbjct: 61 FIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of CmoCh20G002170 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G002170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1D6	1.5e-19	80.56	uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626...	[more]
A0A6J1CHM8	2.2e-18	78.87	uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
E0CTD2	1.8e-12	62.82	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]
A0A7J0DRV4	2.6e-11	59.15	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0072510 PE=4 SV=1	[more]
A0A5D2VES8	1.9e-09	57.53	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D04G167600v1 P...	[more]

BLAST of CmoCh20G002170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570510.1	1.5e-26	98.57	hypothetical protein SDJN03_29425, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7010372.1	3.4e-26	94.52	hypothetical protein SDJN02_27165, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038902353.1	3.9e-22	85.51	uncharacterized protein LOC120088987 [Benincasa hispida]	[more]
KAG7034915.1	1.8e-19	81.94	hypothetical protein SDJN02_01708, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022970726.1	3.1e-19	80.56	uncharacterized protein LOC111469626 [Cucurbita maxima]	[more]

BLAST of CmoCh20G002170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	8.2e-10	46.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	1.2e-05	44.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G002170.1	CmoCh20G002170.1	mRNA