CmoCh20G002090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G002090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProtochlorophyllide reductase B
LocationCmo_Chr20: 1017197 .. 1018771 (-)
RNA-Seq ExpressionCmoCh20G002090
SyntenyCmoCh20G002090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGTATGATCTTGAAACAGGTAGCTAAGGCGTATATGATTTGTAAGAAGAACCTGGGTTCTGTTATCGAGCTATTTACTCAATGACTGCAATTTATAGCTTACGATAGATCGGAACTTCTTTCAATTATTTCTCTAATGAATCAAATTTCCACCATGAATAAGGAATCTGCGTTTCTGTTAACCTTTCTACTAGAACCATATCTGCTGAAAACTGGCTATCGCTTACAACAAATTCATTAAAACTTTCGCAAACAAAGTTTAAGGGTTTCTTTGCAGTTTCACAAGCAGATATTTCTGAAGTTCTTAAGTCAAATTCTAGCTTATATGCTTGAGATTGGTGCATTTAAGCCAATCCAACAAGCTTCTCACTGATCTCCCACAGCTTACGGGCCTTTTCTTCGTCACTGGCTTCTTGGGATAGCTGGTTTTGGAACGAGGCTGAGTTCTTGTTCCAGCTCCAATATACACCTGATTGTTGCAGGCTTGAATCACATACAACCTGAAGTCAAAGATTCAATTGCCCTTTTATCTTAATAACTAGTTAATTTATTAGTAGTTTAGTTTTTCAGGACATGGCTGACCTGTGCAAGTCGTTTCCCGGCTTCTTCTTCAGATACATAGCCCTTGGTGATGTACATCTGGAAGGGTGGAAATAAAATTCTAAACAGAGGAATGTGCTCTCTAAACAACCCTGTTGTGGCAATGCAGCCAGGGTAGAGGGAAGCAAAAGTTATTCCCGTTTCTTCATGATATCTCCTGTGGAGCTCTTGCATGGTGAGCATGTTGCATACTTTGCTATCCTTGTAGGCCTTTGCTCCATCAAAATCTCCTCCATCTATCATGGTCGAGCTGTTCAGGCCATTCAAACCACTTGCTAGCCCTCTCAGATCACCCAGGTTTGCTTTTGGGGGCACATTCCCAGCCAATGTGTTTGTGTTTCCTGGAACCAAACTTAAAAAAGTTGCTTAGAAAATCATTCGTTCTCTTGTTCTAGAACTCAAAATTAATGCTCTCAATTAGTACCCGTGATGGAGCCTACAATTATAACACGCTTGGATGTATAATCTGAATGCTTTATGTCATCTAGCAGCAGGCGTGTGAGGAGGAAGTGACCAAGGTGATTAGTCCCAACACTGAGTTCAAAGCCTTCAGCGGTGAAACTTGGTTCCTTTGCTGTTGGCAAGTAGACAGCAGCATTGCATACAAGCACATCAAGAGGCATACCCGACCTGCGGAAGCTATCCACAAATTGCCTTACACTGTCAAGCGAGGCAAGGTCTAAATGCATAACAGTATAGTTTTCCTTGGCTATGCCTGCTGATTTTGCTGCCATTTGAGCTTTAAGGAAGTTCCTGCATGCCATAATTACATGCCATTTTCCTGTTTCAGCTAGAGCCTTGGCCGTGGCTAGACCCAGTCCCGAGGAAGCTCCTGTAATGATAACATTTCCTTTCCTCAAGGTCTTGTTTCCTTCCGATGGCGCCTGGTTGATTTCTGAAATTGTTGCAGTCTGGGCTCTAATGGCTCCATCAGGTAATCTTCCTTGCTACATGTTCATGGATAGATAA

mRNA sequence

ATGGCGATGTATGATCTTGAAACAGTTTCACAAGCAGATATTTCTGAAGACATGGCTGACCTGTGCAAGTCGTTTCCCGGCTTCTTCTTCAGATACATAGCCCTTGGTGATGCCTTTGCTCCATCAAAATCTCCTCCATCTATCATGGTCGAGCTGTTCAGGCCATTCAAACCACTTGCTAGCCCTCTCAGATCACCCAGGTTTGCTTTTGGGGGCACATTCCCAGCCAATGCGTGTGAGGAGGAAGTGACCAAGGTGATTAGTCCCAACACTGAGTTCAAAGCCTTCAGCGCTAGAGCCTTGGCCGTGGCTAGACCCAGTCCCGAGGAAGCTCCTGTAATGATAACATTTCCTTTCCTCAAGGTCTTGTTTCCTTCCGATGGCGCCTGGTTGATTTCTGAAATTGTTGCAGTCTGGGCTCTAATGGCTCCATCAGGTAATCTTCCTTGCTACATGTTCATGGATAGATAA

Coding sequence (CDS)

ATGGCGATGTATGATCTTGAAACAGTTTCACAAGCAGATATTTCTGAAGACATGGCTGACCTGTGCAAGTCGTTTCCCGGCTTCTTCTTCAGATACATAGCCCTTGGTGATGCCTTTGCTCCATCAAAATCTCCTCCATCTATCATGGTCGAGCTGTTCAGGCCATTCAAACCACTTGCTAGCCCTCTCAGATCACCCAGGTTTGCTTTTGGGGGCACATTCCCAGCCAATGCGTGTGAGGAGGAAGTGACCAAGGTGATTAGTCCCAACACTGAGTTCAAAGCCTTCAGCGCTAGAGCCTTGGCCGTGGCTAGACCCAGTCCCGAGGAAGCTCCTGTAATGATAACATTTCCTTTCCTCAAGGTCTTGTTTCCTTCCGATGGCGCCTGGTTGATTTCTGAAATTGTTGCAGTCTGGGCTCTAATGGCTCCATCAGGTAATCTTCCTTGCTACATGTTCATGGATAGATAA

Protein sequence

MAMYDLETVSQADISEDMADLCKSFPGFFFRYIALGDAFAPSKSPPSIMVELFRPFKPLASPLRSPRFAFGGTFPANACEEEVTKVISPNTEFKAFSARALAVARPSPEEAPVMITFPFLKVLFPSDGAWLISEIVAVWALMAPSGNLPCYMFMDR
Homology
[Close]
BLAST of CmoCh20G002090 vs. ExPASy TrEMBL
Match: A0A6A5PF86 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034145 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-11
Identity = 59/154 (38.31%), Postives = 76/154 (49.35%), Query Frame = 0 

Query: 22  CKSFPGFFFRYIALGDAFAPSKSPPSIMVELFRPFKPLASPLRSPRFA------------ 81
           CK  P F    ++L  A APSK PPSIM E+F PFKP A+PL+SPR +            
Sbjct: 130 CKCDPSFLMTLLSL-YALAPSKFPPSIMDEVFSPFKPPANPLKSPRSSSNRRERRKCPRW 189

Query: 82  -------------FGGTFPANACEEEVTK--VISPNTEFKAFSARALAVARPSPEEAPVM 141
                        F    PA+     V +  + +  T     SARALA ARP+PEEAPV 
Sbjct: 190 FVPTLSSKPSAVNFSLAMPADFAALAVLRKSLQAIITCHFPVSARALAAARPNPEEAPVT 249

Query: 142 ITFPFLKVLFPSDGAWLISEIVAVWALMAPSGNL 149
            T PFLKV  PS   ++ + +V   A  +P+  L
Sbjct: 250 TTLPFLKVFLPSGATFVKAGVVV--ATSSPASEL 280

[Close]
BLAST of CmoCh20G002090 vs. ExPASy TrEMBL
Match: A0A0A9IE60 (Protochlorophyllide reductase B OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 38 AFAPSKSPPSIMVELFRPFKPLASPLRSPRFAFGGTFPAN 78
          AFAPS SPPSI+ +   PF P ASP RSPRFAFGGTFPAN
Sbjct: 10 AFAPSNSPPSIIADEPTPFSPPASPRRSPRFAFGGTFPAN 49

[Close]
BLAST of CmoCh20G002090 vs. ExPASy TrEMBL
Match: A0A7C9D475 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-04
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 98  ARALAVARPSPEEAPVMITFPFLKVLFPSDGAWLI-SEIVAVWALM 143
           ARALAVARPSP++APV+ T PFL V F S  A LI  ++V VWAL+
Sbjct: 27  ARALAVARPSPDDAPVITTVPFLSVFFSSGVARLIDGDVVTVWALI 72

[Close]
BLAST of CmoCh20G002090 vs. NCBI nr
Match: KAF1896447.1 (hypothetical protein Lal_00034145 [Lupinus albus])

HSP 1 Score: 78.6 bits (192), Expect = 5.4e-11
Identity = 59/154 (38.31%), Postives = 76/154 (49.35%), Query Frame = 0 

Query: 22  CKSFPGFFFRYIALGDAFAPSKSPPSIMVELFRPFKPLASPLRSPRFA------------ 81
           CK  P F    ++L  A APSK PPSIM E+F PFKP A+PL+SPR +            
Sbjct: 130 CKCDPSFLMTLLSL-YALAPSKFPPSIMDEVFSPFKPPANPLKSPRSSSNRRERRKCPRW 189

Query: 82  -------------FGGTFPANACEEEVTK--VISPNTEFKAFSARALAVARPSPEEAPVM 141
                        F    PA+     V +  + +  T     SARALA ARP+PEEAPV 
Sbjct: 190 FVPTLSSKPSAVNFSLAMPADFAALAVLRKSLQAIITCHFPVSARALAAARPNPEEAPVT 249

Query: 142 ITFPFLKVLFPSDGAWLISEIVAVWALMAPSGNL 149
            T PFLKV  PS   ++ + +V   A  +P+  L
Sbjct: 250 TTLPFLKVFLPSGATFVKAGVVV--ATSSPASEL 280

The following BLAST results are available for this feature:
BLAST of CmoCh20G002090 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G002090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5PF862.6e-1138.31Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034145 PE=4 SV=1[more]
A0A0A9IE601.5e-0675.00Protochlorophyllide reductase B OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7C9D4759.0e-0463.04Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
BLAST of CmoCh20G002090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF1896447.15.4e-1138.31hypothetical protein Lal_00034145 [Lupinus albus][more]
BLAST of CmoCh20G002090 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G002090.1CmoCh20G002090.1mRNA