CmoCh20G001970 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G001970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S acidic ribosomal protein family
LocationCmo_Chr20: 966215 .. 967665 (+)
RNA-Seq ExpressionCmoCh20G001970
SyntenyCmoCh20G001970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCCATTAACCGTTTTAGGCTCACGAAAGGCCCGAAAAAGAGAACCCTAATTATAAATTGTTGCATCCGCGACATTTGGCTTTTTACTATTTGACCGGCGGCTCCGATCTCCCTTCCCTCTTGTTTGCGGCTTCTGTTACGAGCTTCTCAAGTATTCTTTCTTCTCCAAATCTTGTTTTTCCATTGATTTTTATTGTGTATGTGATTCTCATTTCTGGTTTTTAACATTTGATGGTGTCGAAGCAGAAATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGGTTCTTTCACAAACTATTTGTTCTTTTCTTACAGATTCAATTGCTACATTGGCATTGTTGTTGCTGTCGAAGATAGAGTTGTTGTTATAGGATTTGATAATGACTGGGTTTTAATCGATCCGAAATTTTGTTATACTGGCCGTCTCTTTATGATTTAGTTAGGGAGTTGCTAAAAATTAATTTAAGTCTGAAATGTATTACCCGAAACGATGGGCGCTCTTATTGAATTCGTGTTATGATATCTTGTGGGGTTTTATTTACAGTTGGGGCTGAGGTGGATGAGGACAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGCTAGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCATCGCCGCCCCTGCCGGCGGTGTCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCTGACGATGTAAGTGTTTAACCTGTTGTTCATAGGCATACACATTTTGATTTGCTATTCTGCATTCTAATCTGTGAATGACTTGTACTGTATGAAAATGGACCTAAATTTTATGTCTCATCTTTCTGCAGGATATGGGTTTCAGCCTCTTTGACTGAGAAACTCATTTGGCGTCATTATCAGTTAGTATTTTTGTTGAATTTGGTTCAAGTTTCAGGGCTGTGGTAGCTTGATAGAGGTTTTTCTTTTTGACTTGTTTGGAACTCAAAAATTTTGATAGATGAATTTCAACATTTCAGTGATGACCACCATTTCAATTGTGTGAGATTAATGACTCCCAAATGGTTCTTATCTCATTGTGCATGATTAATTTTGACTATGCTAATTCCAATCATTGTTTATTTCATCATTTTTTCACTCTGTTCTGAGTGTGCGATGTGCGGTATGCCACAGAATTAGAAAATATCCATCACTTTTCCTCTCTGCCTTCGACCAACGATTTCTATGATTTCTTGCCCTCTTGTCACTGTAGAGTAAAAGATTTTATTCATGCATGGTGCATACGTTTAAAAGATTTATCATATGATTTTTCTATTTTAGTACATGCACATAGAACTATTATATTAG

mRNA sequence

CGCCCATTAACCGTTTTAGGCTCACGAAAGGCCCGAAAAAGAGAACCCTAATTATAAATTGTTGCATCCGCGACATTTGGCTTTTTACTATTTGACCGGCGGCTCCGATCTCCCTTCCCTCTTGTTTGCGGCTTCTGTTACGAGCTTCTCAAAAATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTTGGGGCTGAGGTGGATGAGGACAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGCTAGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCATCGCCGCCCCTGCCGGCGGTGTCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCTGACGATGGCTGTGGTAGCTTGATAGAGTACATGCACATAGAACTATTATATTAG

Coding sequence (CDS)

ATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTTGGGGCTGAGGTGGATGAGGACAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGCTAGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCATCGCCGCCCCTGCCGGCGGTGTCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCTGACGATGGCTGTGGTAGCTTGATAGAGTACATGCACATAGAACTATTATATTAG

Protein sequence

MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCGSLIEYMHIELLY
Homology
[Close]
BLAST of CmoCh20G001970 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 7.7e-32
Identity = 79/110 (71.82%), Postives = 94/110 (85.45%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE DE++++ LL+++K KDITE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           +L+SVPSGGGA+ + APA  VAGGGAAP A E KKEEKVEEKEESD+  G
Sbjct: 61  RLSSVPSGGGAIDMGAPA-AVAGGGAAP-AEEAKKEEKVEEKEESDEDMG 108

[Close]
BLAST of CmoCh20G001970 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 6.1e-29
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MK VAAYLLAVL GN SP  DD+  IL SVG EVD ++++ LLSQ+ GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           K ASVP GGG V +AA A   A GGAAP AAE KKEEKVEEKEESDD  G
Sbjct: 61  KFASVPCGGGGVAVAAAA--PAAGGAAP-AAEAKKEEKVEEKEESDDDMG 107

[Close]
BLAST of CmoCh20G001970 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-27
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKV+AA+LLA+LGGNTSP  +D+K IL SVGA+ D+D+I+ LLSQVKGKDITELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAA--EQKKEEKVEEKEESDDG 109
           +LASVPSGGG V +AA AGG  GGG APAAA  E KKEEK EE+ + + G
Sbjct: 61  RLASVPSGGG-VAVAAAAGG--GGGDAPAAAAEEPKKEEKSEEESDEELG 107

[Close]
BLAST of CmoCh20G001970 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 7.5e-27
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAA+LLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPS GGG V +A+   G  GGG AP AAE KKEEK EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh20G001970 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-26
Identity = 74/115 (64.35%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPSGGG     A A    GGG   +AAE KKEEK EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh20G001970 vs. ExPASy TrEMBL
Match: A0A6J1FYH3 (60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448674 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMG 110

[Close]
BLAST of CmoCh20G001970 vs. ExPASy TrEMBL
Match: A0A6J1J9Z4 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111483902 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 106/110 (96.36%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAVGIAAPAGG AGGGAAPAA EQKKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMG 110

[Close]
BLAST of CmoCh20G001970 vs. ExPASy TrEMBL
Match: A0A6J1DJB9 (60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC111020580 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 99/110 (90.00%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDEDRI+SLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAV +AAPAGG AGGGAAPAAAE+KKEEKVEEKE+SDD  G
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVEEKEDSDDDLG 110

[Close]
BLAST of CmoCh20G001970 vs. ExPASy TrEMBL
Match: A0A6J1GZW9 (60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111459175 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 100/110 (90.91%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAV +AAPAGG AGGGAAPAAAE KKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMG 109

[Close]
BLAST of CmoCh20G001970 vs. ExPASy TrEMBL
Match: A0A6J1KA82 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111491509 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.0e-39
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVDE+RI+SLL+QVKGKDITELI SGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDENRINSLLTQVKGKDITELITSGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAV +AA AGG AGGGAAPAAAE KKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVAVAATAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMG 109

[Close]
BLAST of CmoCh20G001970 vs. NCBI nr
Match: XP_022944125.1 (60S acidic ribosomal protein P2B-like [Cucurbita moschata])

HSP 1 Score: 195.3 bits (495), Expect = 3.1e-46
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMG 110

[Close]
BLAST of CmoCh20G001970 vs. NCBI nr
Match: KAG6570492.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.7 bits (491), Expect = 9.0e-46
Identity = 107/110 (97.27%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE
Sbjct: 70  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 129

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAVGIAAPAGG AGGGAAPAAAEQKKEEKVEEKEESDD  G
Sbjct: 130 KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMG 179

[Close]
BLAST of CmoCh20G001970 vs. NCBI nr
Match: KAG7010354.1 (60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 9.0e-46
Identity = 107/110 (97.27%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAVGIAAPAGG AGGGAAPAAAEQKKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMG 110

[Close]
BLAST of CmoCh20G001970 vs. NCBI nr
Match: XP_022986046.1 (60S acidic ribosomal protein P2B-like [Cucurbita maxima])

HSP 1 Score: 192.2 bits (487), Expect = 2.6e-45
Identity = 106/110 (96.36%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAVGIAAPAGG AGGGAAPAA EQKKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMG 110

[Close]
BLAST of CmoCh20G001970 vs. NCBI nr
Match: XP_023512871.1 (60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.7 bits (483), Expect = 7.7e-45
Identity = 106/110 (96.36%), Postives = 106/110 (96.36%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG 111
           KLASVPSGGGAVGIAAPAGG AGGGAA AAAEQKKEEKVEEKEESDD  G
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAAAAAEQKKEEKVEEKEESDDDMG 110

[Close]
BLAST of CmoCh20G001970 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 121.3 bits (303), Expect = 5.3e-28
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAA+LLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPS GGG V +A+   G  GGG AP AAE KKEEK EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh20G001970 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 74/115 (64.35%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPSGGG     A A    GGG   +AAE KKEEK EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh20G001970 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 74/115 (64.35%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPSGGG     A A    GGG   +AAE KKEEK EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh20G001970 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 74/115 (64.35%), Postives = 83/115 (72.17%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPSGGG     A A    GGG   +AAE KKEEK EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]
BLAST of CmoCh20G001970 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 118.2 bits (295), Expect = 4.5e-27
Identity = 74/115 (64.35%), Postives = 86/115 (74.78%), Query Frame = 0 

Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I+ LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDGCG-SLIE 115
           KLASVPSGGG    AAP+ G  GG AAPA   +KKE K EEKEESDD  G SL E
Sbjct: 61  KLASVPSGGGVAVSAAPSSG-GGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

The following BLAST results are available for this feature:
BLAST of CmoCh20G001970 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O244157.7e-3271.8260S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1[more]
P462526.1e-2970.0060S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3[more]
P410991.2e-2770.0060S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1[more]
P514077.5e-2765.5260S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ... [more]
Q9SLF71.7e-2664.3560S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ... [more]
BLAST of CmoCh20G001970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FYH31.5e-4698.1860S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448... [more]
A0A6J1J9Z41.3e-4596.3660S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11148390... [more]
A0A6J1DJB91.1e-4190.0060S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC11102... [more]
A0A6J1GZW93.6e-4090.9160S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111459... [more]
A0A6J1KA824.0e-3989.0960S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11149150... [more]
BLAST of CmoCh20G001970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022944125.13.1e-4698.1860S acidic ribosomal protein P2B-like [Cucurbita moschata][more]
KAG6570492.19.0e-4697.2760S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia... [more]
KAG7010354.19.0e-4697.2760S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022986046.12.6e-4596.3660S acidic ribosomal protein P2B-like [Cucurbita maxima][more]
XP_023512871.17.7e-4596.3660S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo][more]
BLAST of CmoCh20G001970 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27720.15.3e-2865.5260S acidic ribosomal protein family [more]
AT2G27710.11.2e-2764.3560S acidic ribosomal protein family [more]
AT2G27710.21.2e-2764.3560S acidic ribosomal protein family [more]
AT2G27710.31.2e-2764.3560S acidic ribosomal protein family [more]
AT3G44590.24.5e-2764.3560S acidic ribosomal protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 18..111
e-value: 1.0E-19
score: 70.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..108
NoneNo IPR availablePANTHERPTHR21141:SF8360S ACIDIC RIBOSOMAL PROTEIN P2A-LIKEcoord: 2..110
IPR038716Ribosomal protein P1/P2, N-terminal domainGENE3D1.10.10.1410coord: 1..59
e-value: 6.8E-26
score: 92.2
IPR044076Ribosomal protein P2PANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 2..110
IPR044076Ribosomal protein P2CDDcd05833Ribosomal_P2coord: 1..71
e-value: 2.20814E-34
score: 113.127
IPR027534Ribosomal protein L12/P1/P2 familyHAMAPMF_01478Ribosomal_L12_archcoord: 2..114
score: 14.547033

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G001970.1CmoCh20G001970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002182 cytoplasmic translational elongation
biological_process GO:0006414 translational elongation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome