CmoCh20G001450 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G001450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Maturase K
Location	Cmo_Chr20: 718446 .. 719021 (+)
RNA-Seq Expression	CmoCh20G001450
Synteny	CmoCh20G001450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAGTACTTACTCGTGGTCCCTACTCATTGTCCCGATGCACCATCCAACAAACCATATCATGTGTGCATTGGAAGGGAAACAAAAAGGGATGATGCATCATCCAGCAAACCATATAATGTGTAGATTGGAAGGGATGTTGGAATGCGTAAAATGACTGCGCTTAAAATCCTATTTAAATATAACCTGACTACCTCCCGAAATCAGGGAAGGGAAGGGAATACAGGGTCCTCTTCAGTCGCTTCTCTTTGGGCTGCCTTGAATTCCCCTCGGCCGACTGATTGATCTGATCCTTTCTTTCTTGCTTTCACTGCTCTTTCTCCTTTACTGGTATGGAGTCAGATGCTAGAAAATTCATTTCTAATAGATAATGCTACAAAGAAAATCGATACACTAGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCGAAATTTTGTAATGTGTTAGGGCATCCCATTAGTAAGCCGACCTGGATCGATTCGTCGGATTTTTCTATTATTGATCGATTTGTGCAAAAATGGTCACAACGCATCGTGGAGAGTTTGCACCGGGAGTTGCTCTTCTAA

mRNA sequence

ATGTCTAAGTACTTACTCGTGGTCCCTACTCATTGTCCCGATGCACCATCCAACAAACCATATCATATGCTAGAAAATTCATTTCTAATAGATAATGCTACAAAGAAAATCGATACACTAGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCGAAATTTTGTAATGTGTTAGGGCATCCCATTAGTAAGCCGACCTGGATCGATTCGTCGGATTTTTCTATTATTGATCGATTTGTGCAAAAATGGTCACAACGCATCGTGGAGAGTTTGCACCGGGAGTTGCTCTTCTAA

Coding sequence (CDS)

ATGTCTAAGTACTTACTCGTGGTCCCTACTCATTGTCCCGATGCACCATCCAACAAACCATATCATATGCTAGAAAATTCATTTCTAATAGATAATGCTACAAAGAAAATCGATACACTAGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCGAAATTTTGTAATGTGTTAGGGCATCCCATTAGTAAGCCGACCTGGATCGATTCGTCGGATTTTTCTATTATTGATCGATTTGTGCAAAAATGGTCACAACGCATCGTGGAGAGTTTGCACCGGGAGTTGCTCTTCTAA

Protein sequence

MSKYLLVVPTHCPDAPSNKPYHMLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQKWSQRIVESLHRELLF

Homology

[Close]

BLAST of CmoCh20G001450 vs. ExPASy Swiss-Prot
Match: Q2QDA7 (Maturase K OS=Cucumis sativus OX=3659 GN=matK PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-25
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNAT+K+DTLVPIITLL SLAKAKFCNVLGHPISKPTWIDSSDF IIDRF++
Sbjct: 347 MLENSFLIDNATQKLDTLVPIITLLASLAKAKFCNVLGHPISKPTWIDSSDFDIIDRFLR 406

[Close]

BLAST of CmoCh20G001450 vs. ExPASy Swiss-Prot
Match: P68749 (Maturase K OS=Carpinus betulus OX=12990 GN=matK PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-23
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 10  THCPDAPSNKPYHMLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWI 69
           ++ P  PS  P  MLENSF+I+NA KK+DT+VPII L+GSLAKAKFCN LGHPISKPTW 
Sbjct: 334 SNVPLNPSMVPSQMLENSFVINNAPKKLDTIVPIIPLIGSLAKAKFCNALGHPISKPTWA 393

Query: 70  DSSDFSIIDRFVQ 83
           D SDF II+RFV+
Sbjct: 394 DLSDFDIINRFVR 406

[Close]

BLAST of CmoCh20G001450 vs. ExPASy Swiss-Prot
Match: P68748 (Maturase K OS=Carpinus orientalis OX=175951 GN=matK PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-23
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 10  THCPDAPSNKPYHMLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWI 69
           ++ P  PS  P  MLENSF+I+NA KK+DT+VPII L+GSLAKAKFCN LGHPISKPTW 
Sbjct: 334 SNVPLNPSMVPSQMLENSFVINNAPKKLDTIVPIIPLIGSLAKAKFCNALGHPISKPTWA 393

Query: 70  DSSDFSIIDRFVQ 83
           D SDF II+RFV+
Sbjct: 394 DLSDFDIINRFVR 406

[Close]

BLAST of CmoCh20G001450 vs. ExPASy Swiss-Prot
Match: Q8WJN0 (Maturase K OS=Vauquelinia californica OX=36600 GN=matK PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.8e-22
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV 82
           MLENSFL+DNA KK+DTLVPII L+GSLAK KFCN LGHPISK TW DSSDF IIDRFV
Sbjct: 347 MLENSFLMDNAMKKLDTLVPIIPLIGSLAKVKFCNALGHPISKSTWADSSDFDIIDRFV 405

[Close]

BLAST of CmoCh20G001450 vs. ExPASy Swiss-Prot
Match: Q6EIJ6 (Maturase K OS=Adansonia digitata OX=69109 GN=matK PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.6e-22
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 16  PSNKPYHMLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFS 75
           PS     MLENSF+IDNA KK+DT +PII+L+GSL+KAKFCN LGHPISKPTW DSSD  
Sbjct: 338 PSVVRSQMLENSFIIDNAMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSD 397

Query: 76  IIDRFVQ 83
           IIDRFV+
Sbjct: 398 IIDRFVR 404

[Close]

BLAST of CmoCh20G001450 vs. ExPASy TrEMBL
Match: A0A0S2IGE8 (Maturase K OS=Cucurbita moschata OX=3662 GN=matK PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

[Close]

BLAST of CmoCh20G001450 vs. ExPASy TrEMBL
Match: A0A0S2IET2 (Maturase K OS=Cucurbita argyrosperma OX=34294 GN=matK PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

[Close]

BLAST of CmoCh20G001450 vs. ExPASy TrEMBL
Match: G8CZ04 (Maturase K (Fragment) OS=Cucurbita argyrosperma var. stenosperma OX=1094861 GN=matK PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 311 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 370

[Close]

BLAST of CmoCh20G001450 vs. ExPASy TrEMBL
Match: G8CZ10 (Maturase K (Fragment) OS=Cucurbita maxima OX=3661 GN=matK PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 311 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 370

[Close]

BLAST of CmoCh20G001450 vs. ExPASy TrEMBL
Match: A0A2H4T1W4 (Maturase K OS=Cucurbita maxima OX=3661 GN=matK PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: AXF84285.1 (maturase K, partial [Cucurbita pepo])

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 187 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 246

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: ALO22256.1 (maturase K [Cucurbita lundelliana] >ALO22445.1 maturase K [Cucurbita okeechobeensis] >ALO22530.1 maturase K [Cucurbita okeechobeensis subsp. martinezii])

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: AEQ92177.1 (maturase K, partial [Cucurbita foetidissima] >AEQ92184.1 maturase K, partial [Cucurbita pedatifolia])

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 311 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 370

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: AEK77447.1 (maturase K, partial [Cucurbita pepo])

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 120 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 179

[Close]

BLAST of CmoCh20G001450 vs. NCBI nr
Match: ALO21725.1 (maturase K [Cucurbita argyrosperma] >ALO21794.1 maturase K [Cucurbita argyrosperma var. palmeri])

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

[Close]

BLAST of CmoCh20G001450 vs. TAIR 10
Match: ATCG00040.1 (maturase K )

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-18
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 23  MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVQ 82
           MLENSFLIDN   K+D+ +PI +++GSLAK KFCNVLGHPISK TW DSSD  I++RFV+
Sbjct: 369 MLENSFLIDNVRIKLDSKIPISSIIGSLAKDKFCNVLGHPISKATWTDSSDSDILNRFVR 428

The following BLAST results are available for this feature:

BLAST of CmoCh20G001450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QDA7	5.6e-25	90.00	Maturase K OS=Cucumis sativus OX=3659 GN=matK PE=3 SV=1	[more]
P68749	5.3e-23	69.86	Maturase K OS=Carpinus betulus OX=12990 GN=matK PE=3 SV=1	[more]
P68748	5.3e-23	69.86	Maturase K OS=Carpinus orientalis OX=175951 GN=matK PE=3 SV=1	[more]
Q8WJN0	5.8e-22	83.05	Maturase K OS=Vauquelinia californica OX=36600 GN=matK PE=3 SV=1	[more]
Q6EIJ6	7.6e-22	73.13	Maturase K OS=Adansonia digitata OX=69109 GN=matK PE=3 SV=1	[more]

BLAST of CmoCh20G001450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IGE8	1.3e-24	98.33	Maturase K OS=Cucurbita moschata OX=3662 GN=matK PE=3 SV=1	[more]
A0A0S2IET2	1.3e-24	98.33	Maturase K OS=Cucurbita argyrosperma OX=34294 GN=matK PE=3 SV=1	[more]
G8CZ04	1.3e-24	98.33	Maturase K (Fragment) OS=Cucurbita argyrosperma var. stenosperma OX=1094861 GN=m...	[more]
G8CZ10	1.3e-24	98.33	Maturase K (Fragment) OS=Cucurbita maxima OX=3661 GN=matK PE=3 SV=1	[more]
A0A2H4T1W4	1.3e-24	98.33	Maturase K OS=Cucurbita maxima OX=3661 GN=matK PE=3 SV=1	[more]

BLAST of CmoCh20G001450 vs. NCBI nr


Match Name	E-value	Identity	Description
AXF84285.1	2.7e-24	98.33	maturase K, partial [Cucurbita pepo]	[more]
ALO22256.1	2.7e-24	98.33	maturase K [Cucurbita lundelliana] >ALO22445.1 maturase K [Cucurbita okeechobeen...	[more]
AEQ92177.1	2.7e-24	98.33	maturase K, partial [Cucurbita foetidissima] >AEQ92184.1 maturase K, partial [Cu...	[more]
AEK77447.1	2.7e-24	98.33	maturase K, partial [Cucurbita pepo]	[more]
ALO21725.1	2.7e-24	98.33	maturase K [Cucurbita argyrosperma] >ALO21794.1 maturase K [Cucurbita argyrosper...	[more]

BLAST of CmoCh20G001450 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00040.1	1.1e-18	68.33	maturase K	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024937	Domain X	PFAM	PF01348	Intron_maturas2	coord: 35..82 e-value: 1.3E-8 score: 35.0
IPR002866	Maturase MatK	PANTHER	PTHR34811	MATURASE K	coord: 22..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G001450.1	CmoCh20G001450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
biological_process	GO:0008380	RNA splicing
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004715	non-membrane spanning protein tyrosine kinase activity
molecular_function	GO:0003723	RNA binding