CmoCh20G001170 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G001170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 593900 .. 594648 (+)
RNA-Seq ExpressionCmoCh20G001170
SyntenyCmoCh20G001170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTATATAGATCGAGTACTCGTCGTCGTAGAACAGACGATTGCGGCTCATTTCGTTTCAGTTCTGCTGGAACCACCGCGATCGACGATCTCTGTAGGTTTTTCGGCGATTGACGAGGTTTACAGGTACGCTTCTCACGTATTAGTATTTAGTAATTACTTTTATCGATAGGTTTGAGGCGTTTTACATATGTTTTGGAACTGATCGGAAAATTTATGAAAATAAAAAATCATGAAATCGTACTTTTAGTGGTTGTTTCTGAGTTCCTATGCGAAAAGGAAAAGTTAGTTACAGTGTTGTGAGGGATGGAAACAAGGAGTGGATGAACAGACAGATAACAATAGGCGTGACATGAAAGGAAGAGTCGGAGGGCTGTCTGTTTCATTTCTCTCTAATCTATTCCTAGAGATCGGTTCGATCTTCCACATTTCTCCTACTCTATAGTGTTCTCTCTAGATCGTGTCCTGGTCGTCGTATAGAATTGTTGCTCATTTTGCTTCAGTTTTGGTGGAACTACCGCCTGATTGTGCGAATAGTGACGACTACGGTCTCTGTAGGTTCTCCTGCGTTCAGCGAGGATTTCAGGTACGCTTCTCGCGTGTTAGTATTTAGTGATTACTTTTCTCGATCGTCTGAGGCGTTTTCCATACGTTCTGGAACTGATCGAGAAATTTACGGATAGAAAAAACGTGAAATCATACTTTTGTCGGTTGTGTCCGAGTTCCAATGCGACAAGGAAAAGTTAG

mRNA sequence

ATGTTGTATATAGATCGAGTACTCGTCGTCGTAGAACAGACGATTGCGGCTCATTTCGTTTCAGTTCTGCTGGAACCACCGCGATCGACGATCTCTGTAGTTTTGGTGGAACTACCGCCTGATTGTGCGAATAGTGACGACTACGGTCTCTGTAGGTTCTCCTGCGTTCAGCGAGGATTTCAGTATTTAGTGATTACTTTTCTCGATCGTCTGAGGCGTTTTCCATACGTTCTGGAACTGATCGAGAAATTTACGGATAGAAAAAACGTGAAATCATACTTTTGTCGGTTGTGTCCGAGTTCCAATGCGACAAGGAAAAGTTAG

Coding sequence (CDS)

ATGTTGTATATAGATCGAGTACTCGTCGTCGTAGAACAGACGATTGCGGCTCATTTCGTTTCAGTTCTGCTGGAACCACCGCGATCGACGATCTCTGTAGTTTTGGTGGAACTACCGCCTGATTGTGCGAATAGTGACGACTACGGTCTCTGTAGGTTCTCCTGCGTTCAGCGAGGATTTCAGTATTTAGTGATTACTTTTCTCGATCGTCTGAGGCGTTTTCCATACGTTCTGGAACTGATCGAGAAATTTACGGATAGAAAAAACGTGAAATCATACTTTTGTCGGTTGTGTCCGAGTTCCAATGCGACAAGGAAAAGTTAG

Protein sequence

MLYIDRVLVVVEQTIAAHFVSVLLEPPRSTISVVLVELPPDCANSDDYGLCRFSCVQRGFQYLVITFLDRLRRFPYVLELIEKFTDRKNVKSYFCRLCPSSNATRKS
Homology
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BLAST of CmoCh20G001170 vs. NCBI nr
Match: KAG6570417.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 5   DRVLVVVEQTIAAHFVSVLLEPPRSTISV 34
           DRVLVVVEQTIAAHFVSVLLEPPRSTISV
Sbjct: 426 DRVLVVVEQTIAAHFVSVLLEPPRSTISV 454

The following BLAST results are available for this feature:
BLAST of CmoCh20G001170 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G001170 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G001170 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570417.13.4e-04100.00Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh20G001170 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G001170.1CmoCh20G001170.1mRNA