CmoCh20G001160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G001160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein LATERAL ROOT PRIMORDIUM 1-like
Location	Cmo_Chr20: 589618 .. 591557 (+)
RNA-Seq Expression	CmoCh20G001160
Synteny	CmoCh20G001160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTTTTTCTTTTTAATCCCTAAAAAAAAAAAAAAAACAAAAAACAAAAAACAAAGAAAAAAATCTCCCCCTTCTTCCCTCCTTTTTCTGTCTACAAAATCTCTCTGCTAGAAATTCAGAGAGACCCCACATCCATATAACGCCTACATAGATTGAGTTCCACGATCCCAAATCTTTTTCTTCAAACCCCAAACCCAAACCGTATATATTTTCCCCTCATTTTCCCAATTTCTTTTGTTTCCATCTCAATTTTATATTTATTTTTATCATTTCTTATCTTGTTTTTCCATATATAAACCCATCCGCCTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGCGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTATGTGGTCCGCCGCGGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTCGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCACCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGGTAAGAATAATTGCCCCAAAATTTAGGGTTCCTTGTTTTTCGGCGTTTTCCCCCCATAAACTACGGGTATTTTTTTATTCGTCGAATCGTTTGGTTCAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTTCCTAATGTATCGGAACTGAATTTGAGCGACGGCGGCGGTGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGATATATTTTATTCTAATTTTCTTAACGGTTCAAGGTTCTTCCCAGAATCAATCGGCAGCCAAGGATCTGCAACTGTGTAATCTCATCGGACTCTTCTTCCTTTTCTACTAACCCAATTTTCCCTTGAATCCAATTTATTTATGTCTCAAAATCTTCTTGGACTGATTCAGATTGTGTATATCTCACTTCTTTCAACATATTCTCCTTACTCAATATTCAACTCTTTTCATGCCATTGATCTTTCAGCTTCC

mRNA sequence

TTTTGTTTTTCTTTTTAATCCCTAAAAAAAAAAAAAAAACAAAAAACAAAAAACAAAGAAAAAAATCTCCCCCTTCTTCCCTCCTTTTTCTGTCTACAAAATCTCTCTGCTAGAAATTCAGAGAGACCCCACATCCATATAACGCCTACATAGATTGAGTTCCACGATCCCAAATCTTTTTCTTCAAACCCCAAACCCAAACCGTATATATTTTCCCCTCATTTTCCCAATTTCTTTTGTTTCCATCTCAATTTTATATTTATTTTTATCATTTCTTATCTTGTTTTTCCATATATAAACCCATCCGCCTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGCGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTATGTGGTCCGCCGCGGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTCGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCACCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTTCCTAATGTATCGGAACTGAATTTGAGCGACGGCGGCGGTGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGATATATTTTATTCTAATTTTCTTAACGGTTCAAGGTTCTTCCCAGAATCAATCGGCAGCCAAGGATCTGCAACTGTGTAATCTCATCGGACTCTTCTTCCTTTTCTACTAACCCAATTTTCCCTTGAATCCAATTTATTTATGTCTCAAAATCTTCTTGGACTGATTCAGATTGTGTATATCTCACTTCTTTCAACATATTCTCCTTACTCAATATTCAACTCTTTTCATGCCATTGATCTTTCAGCTTCC

Coding sequence (CDS)

ATGTGGTCCGCCGCGGCTGCTGCTCAGAGGTCTCTCAATTATGGCCTCGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCACTTGCCGTCTCTAACTCCGCCACCGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGGAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCACCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGCGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGTCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGACGGCTCTTCAGGTTCCGCCTCCGGCACAAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCCAACACCACTCCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGATGAGTACGCGTATCAAGCAGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTTCCTAATGTATCGGAACTGAATTTGAGCGACGGCGGCGGTGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAACTATGGTAATCAAATCCGCTGA

Protein sequence

MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNSATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPSSSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNYGNQIR

Homology

[Close]

BLAST of CmoCh20G001160 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.0e-79
Identity = 191/355 (53.80%), Postives = 233/355 (65.63%), Query Frame = 0


Query: 20  MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATALGVGVGVGVIPLLTA 79
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 80  G-PCLGVEED--NLLGSRSGSRGGGIQLWQ---QNHQSTQHYLKKTPSSSLDHHLHNASG 139
           G P   VE+   N LG+         + WQ    NH++   + K T  +++        G
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHETQYLHFKSTNQTTV--------G 120

Query: 140 TNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKST 199
           T+++  G G        S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKST
Sbjct: 121 TSSNNSGSG--------SGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKST 180

Query: 200 WVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPG 259
           WV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP 
Sbjct: 181 WVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQ 240

Query: 260 SIDTSSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFL 319
           S +TSSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFL
Sbjct: 241 SFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFL 300

Query: 320 YDQGVEAGDGFPNVSELNLSDGGGGSRNNRNG-SSSAPFVDPSDVYNAAASGNGG 359
           YDQG+E  +GFP++S+L+L    GGS NN NG S+SAP +DP +V      G+GG
Sbjct: 301 YDQGLEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of CmoCh20G001160 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.4e-38
Identity = 112/259 (43.24%), Postives = 144/259 (55.60%), Query Frame = 0


Query: 107 NHQSTQHYLKKTPSSSLDHHLHNASGTNNDLI-GGGIGVFGGLASSSSATTTCQDCGNQA 166
           N  S+Q   +  P   L HH  +    + DL  G  I V     SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 167 KKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL---MAITGTAADGSSGSA--S 226
           KKDC+  RCRTCC+SRGFDC+THV+STW+P ARRRERQ    M+ +G      SG A   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 227 GTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAV 286
           G+  P+     T   TS+S+  P  S        +A F    PG++ + A+F+CV+++ V
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG--EASF----PGEVSSDALFRCVKMSGV 221

Query: 287 DDGED-EYAYQAVVKIGGHVFKGFLYDQGVEA-----GDGFPNVSELNLSDGGGGSRNN- 346
           DDG D +YAYQ  V IGGH+FKG LYDQG E+     G G  +    +   GGGG   N 
Sbjct: 222 DDGGDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNP 281

[Close]

BLAST of CmoCh20G001160 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.8e-35
Identity = 110/274 (40.15%), Postives = 144/274 (52.55%), Query Frame = 0


Query: 91  GSRSGSRGGGIQLWQQ-NHQSTQHYLKKTPSSSLDHHLHNA----SGTNNDLIGGGIGVF 150
           G    S  G ++LWQ  N+Q      ++     LD +   A      +N  LI    G  
Sbjct: 47  GEAGPSYKGTLELWQHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGAL 106

Query: 151 GGLAS-SSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL 210
             + S S S   +CQDCGNQ+KKDCS  RCRTCC+SRG DC THVKSTWVPAA+RRERQ 
Sbjct: 107 MMMRSGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQ 166

Query: 211 MAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPG 270
              TG       GS    ++ R+ A      TS + T  P +   ++S  + G     P 
Sbjct: 167 QLSTGQQPQQLGGSVPKRQRERIPARS----TSMAYTRIPSN---NTSGLEVG---NFPP 226

Query: 271 QIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG-VEAGDGFPNVSELNL 330
           ++ + AVF+CVRV++VDD E+EYAY+  V IGGHVFKG LYDQG  E          LNL
Sbjct: 227 EVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGSQPLNL 286

Query: 331 SDGGGGS---------RNNRNGSSSAPFVDPSDV 349
              G  +          N   GS+S  ++DP+ +
Sbjct: 287 ITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASL 310

[Close]

BLAST of CmoCh20G001160 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-32
Identity = 104/295 (35.25%), Postives = 144/295 (48.81%), Query Frame = 0


Query: 92  SRSGSRGGGIQLWQQNHQSTQHYLKKTPSSSLDHHL-----------HNASGTNNDLIGG 151
           S S +  G ++LWQ ++Q    +  +     LD +            HN    + +    
Sbjct: 60  SSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGETSTA 119

Query: 152 GIG-------VFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTW 211
           G G       +  G +   S   +CQDCGNQAKKDCS  RCRTCC+SRGF+C+THV+STW
Sbjct: 120 GAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTW 179

Query: 212 VPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSH 271
           VPAA+RRERQ    T           S  K+ R     T+S    +       ++  +  
Sbjct: 180 VPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGN-- 239

Query: 272 QDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGV-EAG 331
                    P ++ + AVF+CVRV++V+DGE+E+AYQ  V IGGH+FKG LYD G   +G
Sbjct: 240 --------FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSG 299

Query: 332 DGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSN 368
            G  NV     S  GGG      G+     +    V  A AS +    G +G S+
Sbjct: 300 GGGYNVVAAGESSSGGG------GAQQLNLITAGSVTVATASSSTPNLGGIGSSS 338

[Close]

BLAST of CmoCh20G001160 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-31
Identity = 92/225 (40.89%), Postives = 120/225 (53.33%), Query Frame = 0


Query: 146 GGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLM 205
           GG   +      CQDCGNQAKKDC   RCRTCC+SRGF C THVKSTWVPAA+RRER   
Sbjct: 113 GGFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQ 172

Query: 206 AITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGS------IDTSSSHQDAGFK 265
             +      SS      K+ R  AS   ++    ++   GS      +  ++S+      
Sbjct: 173 LASLQHHSASSRETQNAKRLR-EASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVS 232

Query: 266 EELPGQIRAPAVFKCVRVTAVDDGEDE--YAYQAVVKIGGHVFKGFLYDQGVEAGDGF-- 325
           + LP ++ +PA+F+CVRV+++++ ED+  YAYQ  V IGGH+FKG LYDQG E  D    
Sbjct: 233 QHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHL 292

Query: 326 ---------PNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNA 352
                     NV E       G   NN NG      +DPS +Y A
Sbjct: 293 NLLASTATTTNVEETATKTVTG---NNNNGL----MLDPSSLYPA 329

[Close]

BLAST of CmoCh20G001160 vs. ExPASy TrEMBL
Match: A0A6J1FY67 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448991 PE=3 SV=1)

HSP 1 Score: 734.6 bits (1895), Expect = 2.1e-208
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 361 GFLGGSNYGNQIR 374
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 373

[Close]

BLAST of CmoCh20G001160 vs. ExPASy TrEMBL
Match: A0A6J1JCY6 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC111484595 PE=3 SV=1)

HSP 1 Score: 714.1 bits (1842), Expect = 2.9e-202
Identity = 367/373 (98.39%), Postives = 369/373 (98.93%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGT NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGV+AGDGFPNVSEL+LSDGGGGSRNNRNG SSAPFVDPSDVYN AASGNGGAP
Sbjct: 301 KGFLYDQGVDAGDGFPNVSELHLSDGGGGSRNNRNG-SSAPFVDPSDVYNVAASGNGGAP 360

Query: 361 GFLGGSNYGNQIR 374
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 371

[Close]

BLAST of CmoCh20G001160 vs. ExPASy TrEMBL
Match: A0A5A7V0Q8 (Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00770 PE=3 SV=1)

HSP 1 Score: 594.0 bits (1530), Expect = 4.4e-166
Identity = 316/375 (84.27%), Postives = 331/375 (88.27%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD NL+SD HSLAVSN 
Sbjct: 55  MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNP 114

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPC+GVEE+NL G+RS +RGGGIQ      QSTQHYLKKTPS
Sbjct: 115 ATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPS 174

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
            SLDH     SGTNN+LIGGGIG  GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 175 GSLDH----VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 234

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGT-AADGSSGSASGTKKPRLIASQTTSHTSTS 240
           RGFDCATHVKSTWVPAARRRERQLMA+T T AADGSS S SG KKPRLI SQTTSHTSTS
Sbjct: 235 RGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTS 294

Query: 241 NTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHV 300
           NTTPP S+DTSSSHQD G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHV
Sbjct: 295 NTTPPRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHV 354

Query: 301 FKGFLYDQGVEAGDGFPNVSELNLSD--GGGGSRNNRNGSSSAPFVDPSDVYNAAASGNG 360
           FKGFLYDQGVEAGDGFPNVSEL+L D  GGGG+ NNRNGSSS+P VDPSDVYN AASG+G
Sbjct: 355 FKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSG 414

Query: 361 GAPGFLGGSNYGNQI 373
           G PGFLGGSNYGNQI
Sbjct: 415 GVPGFLGGSNYGNQI 419

[Close]

BLAST of CmoCh20G001160 vs. ExPASy TrEMBL
Match: A0A1S3BMJ0 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 594.0 bits (1530), Expect = 4.4e-166
Identity = 316/375 (84.27%), Postives = 331/375 (88.27%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD NL+SD HSLAVSN 
Sbjct: 1   MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNP 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPC+GVEE+NL G+RS +RGGGIQ      QSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
            SLDH     SGTNN+LIGGGIG  GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 GSLDH----VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGT-AADGSSGSASGTKKPRLIASQTTSHTSTS 240
           RGFDCATHVKSTWVPAARRRERQLMA+T T AADGSS S SG KKPRLI SQTTSHTSTS
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTS 240

Query: 241 NTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHV 300
           NTTPP S+DTSSSHQD G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHV
Sbjct: 241 NTTPPRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHV 300

Query: 301 FKGFLYDQGVEAGDGFPNVSELNLSD--GGGGSRNNRNGSSSAPFVDPSDVYNAAASGNG 360
           FKGFLYDQGVEAGDGFPNVSEL+L D  GGGG+ NNRNGSSS+P VDPSDVYN AASG+G
Sbjct: 301 FKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSG 360

Query: 361 GAPGFLGGSNYGNQI 373
           G PGFLGGSNYGNQI
Sbjct: 361 GVPGFLGGSNYGNQI 365

[Close]

BLAST of CmoCh20G001160 vs. ExPASy TrEMBL
Match: A0A6J1H2U0 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459511 PE=3 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 3.8e-165
Identity = 311/373 (83.38%), Postives = 327/373 (87.67%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAA+QRSLNYGLGSEM MVGLRDV+VVAPA+SFNPNPHHHD NL+SD HSLAVSNS
Sbjct: 1   MWSAAAASQRSLNYGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATAL    GVGVIPLLTAGPCLGVEEDNLL +RS +RGGGIQLWQQN     HYLKK P 
Sbjct: 61  ATAL----GVGVIPLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQN-----HYLKKMP- 120

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHN S  NN LI  GIG+ GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 SSLDHHLHNPSAANNGLIDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDC THVKSTWVPAARRRERQLM +T  AA GSS S SG KK RLIASQTTS TSTSN
Sbjct: 181 RGFDCTTHVKSTWVPAARRRERQLMGVTANAAAGSSASTSGAKKQRLIASQTTSRTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPP S+DTSSSHQDAGF E LPGQ+RAPAVFKCVRVTAVDDG+DEYAYQAVVKIGGH+F
Sbjct: 241 TTPPRSLDTSSSHQDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNG-SSSAPFVDPSDVYNAAASGNGGA 360
           KGFLYDQGVE GD FPNVSEL+L DGGG +RNNRNG SSS+P VDPSDVYNAAA+G GGA
Sbjct: 301 KGFLYDQGVEPGDEFPNVSELHLGDGGGITRNNRNGVSSSSPLVDPSDVYNAAATGGGGA 360

Query: 361 PGFLGGSNYGNQI 373
           P FLGGSNYGNQI
Sbjct: 361 PCFLGGSNYGNQI 363

[Close]

BLAST of CmoCh20G001160 vs. NCBI nr
Match: XP_022944578.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata])

HSP 1 Score: 734.6 bits (1895), Expect = 4.3e-208
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 361 GFLGGSNYGNQIR 374
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 373

[Close]

BLAST of CmoCh20G001160 vs. NCBI nr
Match: XP_023512287.1 (protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 726.9 bits (1875), Expect = 9.1e-206
Identity = 369/373 (98.93%), Postives = 371/373 (99.46%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           +WSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLA SNS
Sbjct: 57  LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNS 116

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 117 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 176

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 177 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 236

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 237 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 296

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 297 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 356

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSEL+LSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 357 KGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 416

Query: 361 GFLGGSNYGNQIR 374
           GFLGGSNYGNQIR
Sbjct: 417 GFLGGSNYGNQIR 429

[Close]

BLAST of CmoCh20G001160 vs. NCBI nr
Match: KAG7010293.1 (Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 723.0 bits (1865), Expect = 1.3e-204
Identity = 370/373 (99.20%), Postives = 370/373 (99.20%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGT NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSELNLSDGGGG RNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 361 GFLGGSNYGNQIR 374
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 372

[Close]

BLAST of CmoCh20G001160 vs. NCBI nr
Match: XP_022987026.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima])

HSP 1 Score: 714.1 bits (1842), Expect = 6.1e-202
Identity = 367/373 (98.39%), Postives = 369/373 (98.93%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGT NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGV+AGDGFPNVSEL+LSDGGGGSRNNRNG SSAPFVDPSDVYN AASGNGGAP
Sbjct: 301 KGFLYDQGVDAGDGFPNVSELHLSDGGGGSRNNRNG-SSAPFVDPSDVYNVAASGNGGAP 360

Query: 361 GFLGGSNYGNQIR 374
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 371

[Close]

BLAST of CmoCh20G001160 vs. NCBI nr
Match: KAG6570417.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 710.7 bits (1833), Expect = 6.7e-201
Identity = 364/368 (98.91%), Postives = 364/368 (98.91%), Query Frame = 0


Query: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60
           MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS
Sbjct: 59  MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 118

Query: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLL SRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 119 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLASRSGSRGGGIQLWQQNQQSTQHYLKKTPS 178

Query: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180
           SSLDHHLHNASGT NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 179 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 238

Query: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 239 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 298

Query: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 299 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 358

Query: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360
           KGFLYDQGVEAGDGFPNVSELNLSDGGGG RNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 359 KGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 418

Query: 361 GFLGGSNY 369
           GFLGGSNY
Sbjct: 419 GFLGGSNY 425

[Close]

BLAST of CmoCh20G001160 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 303.5 bits (776), Expect = 2.3e-82
Identity = 197/369 (53.39%), Postives = 240/369 (65.04%), Query Frame = 0


Query: 11  SLNYGLGS-----EMGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATAL 70
           S+ YGL S     EMGMVGLRDV++VAPA       HH +  +IS  DH     NS  A 
Sbjct: 74  SVRYGLPSSAAATEMGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAA 133

Query: 71  GVGVGVGVIPLLTAG-PCLGVEED--NLLGSRSGSRGGGIQLWQ---QNHQSTQHYLKKT 130
              +GVGVIPLLTAG P   VE+   N LG+         + WQ    NH++   + K T
Sbjct: 134 AAALGVGVIPLLTAGTPQQNVEDSDINFLGNN--------RRWQNNNNNHETQYLHFKST 193

Query: 131 PSSSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCC 190
             +++        GT+++  G G        S +S T TCQDCGNQAKK+C + RCRTCC
Sbjct: 194 NQTTV--------GTSSNNSGSG--------SGASGTATCQDCGNQAKKECKQRRCRTCC 253

Query: 191 RSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------Q 250
           +SRGFDC+THVKSTWV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q
Sbjct: 254 KSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQ 313

Query: 251 TTSHTSTSNTTPPGSIDTSSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQ 310
            TSHTSTSN TPP S +TSSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQ
Sbjct: 314 ATSHTSTSN-TPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQ 373

Query: 311 AVVKIGGHVFKGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNG-SSSAPFVDPSDVY 359
           AVVKIGGHVFKGFLYDQG+E  +GFP++S+L+L    GGS NN NG S+SAP +DP +V 
Sbjct: 374 AVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVV 403

[Close]

BLAST of CmoCh20G001160 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 298.5 bits (763), Expect = 7.4e-81
Identity = 191/355 (53.80%), Postives = 233/355 (65.63%), Query Frame = 0


Query: 20  MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATALGVGVGVGVIPLLTA 79
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 80  G-PCLGVEED--NLLGSRSGSRGGGIQLWQ---QNHQSTQHYLKKTPSSSLDHHLHNASG 139
           G P   VE+   N LG+         + WQ    NH++   + K T  +++        G
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHETQYLHFKSTNQTTV--------G 120

Query: 140 TNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKST 199
           T+++  G G        S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKST
Sbjct: 121 TSSNNSGSG--------SGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKST 180

Query: 200 WVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPG 259
           WV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP 
Sbjct: 181 WVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQ 240

Query: 260 SIDTSSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFL 319
           S +TSSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFL
Sbjct: 241 SFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFL 300

Query: 320 YDQGVEAGDGFPNVSELNLSDGGGGSRNNRNG-SSSAPFVDPSDVYNAAASGNGG 359
           YDQG+E  +GFP++S+L+L    GGS NN NG S+SAP +DP +V      G+GG
Sbjct: 301 YDQGLEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of CmoCh20G001160 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 298.5 bits (763), Expect = 7.4e-81
Identity = 191/355 (53.80%), Postives = 233/355 (65.63%), Query Frame = 0


Query: 20  MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATALGVGVGVGVIPLLTA 79
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 80  G-PCLGVEED--NLLGSRSGSRGGGIQLWQ---QNHQSTQHYLKKTPSSSLDHHLHNASG 139
           G P   VE+   N LG+         + WQ    NH++   + K T  +++        G
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHETQYLHFKSTNQTTV--------G 120

Query: 140 TNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKST 199
           T+++  G G        S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKST
Sbjct: 121 TSSNNSGSG--------SGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKST 180

Query: 200 WVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPG 259
           WV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP 
Sbjct: 181 WVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQ 240

Query: 260 SIDTSSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFL 319
           S +TSSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFL
Sbjct: 241 SFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFL 300

Query: 320 YDQGVEAGDGFPNVSELNLSDGGGGSRNNRNG-SSSAPFVDPSDVYNAAASGNGG 359
           YDQG+E  +GFP++S+L+L    GGS NN NG S+SAP +DP +V      G+GG
Sbjct: 301 YDQGLEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of CmoCh20G001160 vs. TAIR 10
Match: AT5G12330.3 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 173.3 bits (438), Expect = 3.6e-43
Identity = 122/249 (49.00%), Postives = 150/249 (60.24%), Query Frame = 0


Query: 20  MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAVSNSATALGVGVGVGVIPLLTA 79
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 80  G-PCLGVEED--NLLGSRSGSRGGGIQLWQ---QNHQSTQHYLKKTPSSSLDHHLHNASG 139
           G P   VE+   N LG+         + WQ    NH++   + K T  +++        G
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHETQYLHFKSTNQTTV--------G 120

Query: 140 TNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKST 199
           T+++  G G        S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKST
Sbjct: 121 TSSNNSGSG--------SGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKST 180

Query: 200 WVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPG 255
           WV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP 
Sbjct: 181 WVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQ 214

[Close]

BLAST of CmoCh20G001160 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 160.2 bits (404), Expect = 3.2e-39
Identity = 112/259 (43.24%), Postives = 144/259 (55.60%), Query Frame = 0


Query: 107 NHQSTQHYLKKTPSSSLDHHLHNASGTNNDLI-GGGIGVFGGLASSSSATTTCQDCGNQA 166
           N  S+Q   +  P   L HH  +    + DL  G  I V     SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 167 KKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL---MAITGTAADGSSGSA--S 226
           KKDC+  RCRTCC+SRGFDC+THV+STW+P ARRRERQ    M+ +G      SG A   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 227 GTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAV 286
           G+  P+     T   TS+S+  P  S        +A F    PG++ + A+F+CV+++ V
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG--EASF----PGEVSSDALFRCVKMSGV 221

Query: 287 DDGED-EYAYQAVVKIGGHVFKGFLYDQGVEA-----GDGFPNVSELNLSDGGGGSRNN- 346
           DDG D +YAYQ  V IGGH+FKG LYDQG E+     G G  +    +   GGGG   N 
Sbjct: 222 DDGGDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNP 281

The following BLAST results are available for this feature:

BLAST of CmoCh20G001160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	1.0e-79	53.80	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	4.4e-38	43.24	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9XGX0	7.8e-35	40.15	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
Q9SD40	1.6e-32	35.25	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9LQZ5	1.1e-31	40.89	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]

BLAST of CmoCh20G001160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FY67	2.1e-208	100.00	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1JCY6	2.9e-202	98.39	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC1114845...	[more]
A0A5A7V0Q8	4.4e-166	84.27	Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BMJ0	4.4e-166	84.27	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1H2U0	3.8e-165	83.38	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of CmoCh20G001160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944578.1	4.3e-208	100.00	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata]	[more]
XP_023512287.1	9.1e-206	98.93	protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo]	[more]
KAG7010293.1	1.3e-204	99.20	Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022987026.1	6.1e-202	98.39	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima]	[more]
KAG6570417.1	6.7e-201	98.91	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh20G001160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.4	2.3e-82	53.39	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.2	7.4e-81	53.80	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	7.4e-81	53.80	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.3	3.6e-43	49.00	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	3.2e-39	43.24	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 262..309 e-value: 3.5E-30 score: 101.7
None	No IPR available	PFAM	PF05142	DUF702	coord: 155..310 e-value: 1.4E-60 score: 204.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..257
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 20..372
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 157..199 e-value: 2.8E-25 score: 85.9
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 20..372

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G001160.1	CmoCh20G001160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding