CmoCh20G000950 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G000950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	photosystem II 5 kDa protein, chloroplastic
Location	Cmo_Chr20: 476466 .. 476798 (-)
RNA-Seq Expression	CmoCh20G000950
Synteny	CmoCh20G000950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGA

mRNA sequence

ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGA

Coding sequence (CDS)

ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACCGCCACCCAACCCTCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGA

Protein sequence

MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK

Homology

[Close]

BLAST of CmoCh20G000950 vs. ExPASy Swiss-Prot
Match: Q39195 (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBT PE=3 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-12
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASM++TA+F P  A  PSA   RR L V +AST      S++  +LE+K  +  S+  R
Sbjct: 1   MASMTMTATFFPAVAKVPSATGGRR-LSVVRAST------SDNTPSLEVK--EQSSTTMR 60

Query: 61  RELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYAPICVTMPTARICR 110
           R+L+  A   A  + AK AMA  +EP RG+  AK+KYA +CVTMPTA+ICR
Sbjct: 61  RDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

[Close]

BLAST of CmoCh20G000950 vs. ExPASy Swiss-Prot
Match: P31336 (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSBT PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 1   MASMSITASFLPFT-ATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQG 60
           MAS+++T SFL  T  T+ S    +R L V  A+  A       +        K E + G
Sbjct: 1   MASITMTTSFLSTTNLTKGSPRITQRRLVVANAAKGAQVESVQMSGER-----KTEGNNG 60

Query: 61  RRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICR 110
           RRE++ AA   A  + A  A A EP RGSAEAK+ YAP+CVTMPTARICR
Sbjct: 61  RREMMFAAAAAAICSVAGVATA-EPKRGSAEAKKAYAPVCVTMPTARICR 104

[Close]

BLAST of CmoCh20G000950 vs. ExPASy Swiss-Prot
Match: B3EWI4 (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQ 60
           MAS+++ +SFL  +   P+   +A RR + + KA             N+ I   +   + 
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSANRRGVVMVKAM-------HEGENNVVISKNEESKNS 60

Query: 61  GRRELVAAAVTVAAATFAKAAMAD-EPPRGSAEAKQKYAPICVTMPTARICR 110
           GRREL  A    AA + AK AMAD EP RG+ EAK+KY+ +CVT PTARICR
Sbjct: 61  GRRELFFAMAAAAACSVAKTAMADEEPKRGTPEAKKKYSSVCVTNPTARICR 105

[Close]

BLAST of CmoCh20G000950 vs. ExPASy TrEMBL
Match: A0A6J1J874 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484352 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.2e-46
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60

Query: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK
Sbjct: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 110

[Close]

BLAST of CmoCh20G000950 vs. ExPASy TrEMBL
Match: A0A6J1FY72 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449001 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.2e-46
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60

Query: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK
Sbjct: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 110

[Close]

BLAST of CmoCh20G000950 vs. ExPASy TrEMBL
Match: A0A5A7TID9 (Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00980 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.7e-31
Identity = 86/110 (78.18%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASM++TASFLP TAT+  +A  RRAL V KASTS    +  SN NLE+KNVKVES QGR
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKASTS----NETSNVNLEVKNVKVESRQGR 112

Query: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           RELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTARICRK
Sbjct: 113 RELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 158

[Close]

BLAST of CmoCh20G000950 vs. ExPASy TrEMBL
Match: A0A1S3BML8 (photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491503 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.7e-31
Identity = 86/110 (78.18%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASM++TASFLP TAT+  +A  RRAL V KASTS    +  SN NLE+KNVKVES QGR
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKASTS----NETSNVNLEVKNVKVESRQGR 112

Query: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           RELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTARICRK
Sbjct: 113 RELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 158

[Close]

BLAST of CmoCh20G000950 vs. ExPASy TrEMBL
Match: A0A0A0KIB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30
Identity = 85/110 (77.27%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASM++TASFLP TAT+  ++ ARR L V KASTS  A    SN N+E+KNVKVES QGR
Sbjct: 1   MASMAMTASFLPTTATKQPSSTARRPLIVAKASTSNQA----SNVNMEVKNVKVESRQGR 60

Query: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           RELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTARICRK
Sbjct: 61  RELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 106

[Close]

BLAST of CmoCh20G000950 vs. NCBI nr
Match: XP_022944588.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-45
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60

Query: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK
Sbjct: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 110

[Close]

BLAST of CmoCh20G000950 vs. NCBI nr
Match: KAG6570402.1 (Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010275.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-44
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQ 60
           MASMSITASFLPFTATQPS  AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQ
Sbjct: 1   MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQ 60

Query: 61  GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK
Sbjct: 61  GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 112

[Close]

BLAST of CmoCh20G000950 vs. NCBI nr
Match: XP_023512156.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023512157.1 photosystem II 5 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-43
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQ 60
           MASMSITASFLPFTATQPS  AAAARRALFV KASTSAAATDSNSNANLEIKNVKVESSQ
Sbjct: 1   MASMSITASFLPFTATQPSAAAAAARRALFVPKASTSAAATDSNSNANLEIKNVKVESSQ 60

Query: 61  GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK
Sbjct: 61  GRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 112

[Close]

BLAST of CmoCh20G000950 vs. NCBI nr
Match: XP_038901593.1 (photosystem II 5 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-31
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASM++TASFLP TA +  + AARRAL V KASTS+ A    SN NLEIKNVKVE+ QGR
Sbjct: 1   MASMAMTASFLPATANKQPSTAARRALVVAKASTSSDA----SNVNLEIKNVKVENRQGR 60

Query: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           RELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICVTMPTARICRK
Sbjct: 61  RELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 106

[Close]

BLAST of CmoCh20G000950 vs. NCBI nr
Match: XP_008449703.1 (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA0041421.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa] >TYJ96132.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-31
Identity = 86/110 (78.18%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASM++TASFLP TAT+  +A  RRAL V KASTS    +  SN NLE+KNVKVES QGR
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKASTS----NETSNVNLEVKNVKVESRQGR 112

Query: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 111
           RELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAPICVTMPTARICRK
Sbjct: 113 RELVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 158

[Close]

BLAST of CmoCh20G000950 vs. TAIR 10
Match: AT1G51400.1 (Photosystem II 5 kD protein )

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-14
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPS--AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESS- 60
           MASM++T+SFLP  +  P+  ++ +RR+L V KAS S   T         ++N K E S 
Sbjct: 1   MASMTMTSSFLPTVSNLPANISSNSRRSLTVVKASGSENTT--------SLENKKQEQSM 60

Query: 61  QGRRELVAAAVTVAAATFAKAAMA-DEPPRGSAEAKQKYAPICVTMPTARICR 110
           + RR+LV  A   A  + AK AMA DEP RG+  AK+KYAP+CVTMPTA+ICR
Sbjct: 61  KMRRDLVFTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAKICR 105

[Close]

BLAST of CmoCh20G000950 vs. TAIR 10
Match: AT3G21055.1 (photosystem II subunit T )

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-13
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60
           MASM++TA+F P  A  PSA   RR L V +AST      S++  +LE+K  +  S+  R
Sbjct: 1   MASMTMTATFFPAVAKVPSATGGRR-LSVVRAST------SDNTPSLEVK--EQSSTTMR 60

Query: 61  RELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYAPICVTMPTARICR 110
           R+L+  A   A  + AK AMA  +EP RG+  AK+KYA +CVTMPTA+ICR
Sbjct: 61  RDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

The following BLAST results are available for this feature:

BLAST of CmoCh20G000950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39195	3.6e-12	47.75	Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P...	[more]
P31336	1.3e-09	45.45	Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSB...	[more]
B3EWI4	1.1e-08	41.96	Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1	[more]

BLAST of CmoCh20G000950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J874	5.2e-46	100.00	photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FY72	5.2e-46	100.00	photosystem II 5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7TID9	2.7e-31	78.18	Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BML8	2.7e-31	78.18	photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491...	[more]
A0A0A0KIB2	1.8e-30	77.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1	[more]

BLAST of CmoCh20G000950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944588.1	1.1e-45	100.00	photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1...	[more]
KAG6570402.1	3.4e-44	98.21	Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
XP_023512156.1	1.7e-43	97.32	photosystem II 5 kDa protein, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_038901593.1	1.5e-31	80.00	photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_008449703.1	5.7e-31	78.18	PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA004142...	[more]

BLAST of CmoCh20G000950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51400.1	6.7e-14	48.67	Photosystem II 5 kD protein	[more]
AT3G21055.1	2.6e-13	47.75	photosystem II subunit T	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34940:SF4	PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..110
IPR040296	Photosystem II 5kDa protein, chloroplastic	PANTHER	PTHR34940	PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G000950.1	CmoCh20G000950.1	mRNA