CmoCh20G000930 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G000930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr20: 471850 .. 472152 (+)
RNA-Seq Expression	CmoCh20G000930
Synteny	CmoCh20G000930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCGTGGATTGAAAAGGAGGGAAGAGGTGGGGGAGGAAGGTCTCGTTTGCCTTCCGTCTTGGTGGAATCCAAGAGTGGAAGAAGAAGAAGAAGAATTTCTTGGAGGAGAAAGAGAGACTCTGAAACTCCATCTATCAATGCCGCCTTCCCGTTCTTGAGATACATCTTTCTCCTTCAGATTTCAGATAAAAAGCCCTCCAATTCTCCCCTCGCCCCAACTTCTCCGGTTATTCTTCTCAATGTCGTTGTGATTCCTCATTTTCAACTGAAAATTCCAGGTGGGGGTTTTCTTTTATAG

mRNA sequence

ATGGCCTCGTGGATTGAAAAGGAGGGAAGAGGTGGGGGAGGAAGGTCTCGTTTGCCTTCCGTCTTGGTGGAATCCAAGAGTGGAAGAAGAAGAAGAAGAATTTCTTGGAGGAGAAAGAGAGACTCTGAAACTCCATCTATCAATGCCGCCTTCCCGTTCTTGAGATACATCTTTCTCCTTCAGATTTCAGATAAAAAGCCCTCCAATTCTCCCCTCGCCCCAACTTCTCCGGTTATTCTTCTCAATGTCGTTGTGATTCCTCATTTTCAACTGAAAATTCCAGGTGGGGGTTTTCTTTTATAG

Coding sequence (CDS)

ATGGCCTCGTGGATTGAAAAGGAGGGAAGAGGTGGGGGAGGAAGGTCTCGTTTGCCTTCCGTCTTGGTGGAATCCAAGAGTGGAAGAAGAAGAAGAAGAATTTCTTGGAGGAGAAAGAGAGACTCTGAAACTCCATCTATCAATGCCGCCTTCCCGTTCTTGAGATACATCTTTCTCCTTCAGATTTCAGATAAAAAGCCCTCCAATTCTCCCCTCGCCCCAACTTCTCCGGTTATTCTTCTCAATGTCGTTGTGATTCCTCATTTTCAACTGAAAATTCCAGGTGGGGGTTTTCTTTTATAG

Protein sequence

MASWIEKEGRGGGGRSRLPSVLVESKSGRRRRRISWRRKRDSETPSINAAFPFLRYIFLLQISDKKPSNSPLAPTSPVILLNVVVIPHFQLKIPGGGFLL

Homology

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BLAST of CmoCh20G000930 vs. NCBI nr
Match: KAG6605919.1 (hypothetical protein SDJN03_03236, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-06
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 36  WRRKRDSE-TPSINAAFPFLRYIFLLQISDKKPSNSPLAPTSPVILLNVVVIPHFQLKIP 95
           WRRK   +   SINA+F FLR+IFLLQISD    N     TSPVI  +VV IP FQ K P
Sbjct: 181 WRRKGILKLKQSINASFTFLRFIFLLQISDSNDFNFSSRLTSPVIPPDVVAIPEFQRKFP 240

The following BLAST results are available for this feature:

BLAST of CmoCh20G000930 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G000930 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G000930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605919.1	7.5e-06	57.38	hypothetical protein SDJN03_03236, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh20G000930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G000930.1	CmoCh20G000930.1	mRNA