CmoCh20G000590 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G000590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr20: 332510 .. 334260 (+)
RNA-Seq Expression	CmoCh20G000590
Synteny	CmoCh20G000590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGAGCTTGTTGCGGTACCAGATGACTCCTTTATCAGAATTAGCATCCTCATCAGGCGCAACGTAAACACACTCCTTAGCTTCCCTCCAGATGGCCTTCAAAACAGGGGTCCTATCGAGCCGGTAATATTCTCCCAGTACTGGCTTCACCGCTTCCGTCGCCTCCTTCGCATGATAATGCGGCATCGTGGAGAACAAATGGTGAACCACATGCGTGTCCGTTATGTTATGAAACACTCTGTTCAGTACCCCATAGTCTCTGTCCACAGTCGCCAAGGCACCTCTCAGCCAATCCCATTCCGCAGCGTCGTAGTGCGGCAACGCTGGATGGGTGTGCTGCAAGTACGTGATCAAGACCAAAAACCCATTCACTATCAGCAACGGAATTCCGTAAATACGCATCACCCACAGCGCCCCTTTCGCCACGCCAATTCGGTACAGCACGAAACACATGCCTAAAATCCCGGTATCCGAAATGTAAATTTGAACCCACTCTCGTTTCGTGAATATTGGACCGTGGGGATCGTAGTGGCACGCAAATCGGTCGTAGGGACGGCCCGAGACGTTGAAGGCCAAGTACAAGGGCCAGCCCAGGGTGAGTGTTCCGAGGAGTGAAATGAGCCTCCCTGGTGGGTTGTTGAAGTACTTTAAAAACCAGGGGATTTGGGATTTTGGCTTGGGGACAAAGACCTCATCCCGTTCGAGGGAGACCGTGTTGGAGTGGTGGCGCCGGTGACTGTATTTCCAGGAGAAGTAGGGGACGAGGAGAGCAGAGTGGAAGAAGAGGCCAACGATGTCGTCGATTAATTGGTAGTCGGAGAAAGCGTGGTGACCGCACTCGTGAGCGATGACCCAGACGCCAGTGAGGATGCAGCCTTGGAAAACCCAGTAAAGGGGCCATGCAATGTAGGAGGCCGGGTGGGGGATAAGGGGCAAATAGGCAATGGCAAGGTAGAAGAACAGAGAGACGAAGGCGAGGTCGGAAATTAAGCAGGAGAAGGAACGGAGAAGAGAGCGGTGGAAGCAGTGGGGAGGAATGGCTTTCTTGATTTGGCTGAGAGTGAAAGGAGGCTTTGCGTGTGGAACTCGCTCATGGACCGCCTTTTCCATTTTGCTTCCAACTCCCATGGCGGGTATGAATGCTTCGAGTTTTCAACTGAGAGATTGTTATTTAAAAGCAGCAGCAGAACATTGGTCACGTGGAGGTGAATGGACCCCAAATGGATTATGGATCCACGTATGCAACGTAGGGGAAGAAATCGAAAAATGATTTGGATTGAAAATGTAATGACACTTATTTTTATTATATGATATAATGCATGACAGCCACATTTTCATGTAACATCTGCCTAATATGTTTATGGTATTTCTTATAACATAGAATTATTATTATAAAGTTATGATCCATTATACGTGATTGCTCGCACATCAAATAAAATATGACTAATTCAATAACCCATAATAGAAACTTGTTATTCATGCATCAAAAAACTCATCTAATCAACTTTTAGGCCTTTCAATGGTAAAACATTTATTGTCATCAGCTCAATTCAATGTTCTTATATTTAGTTGATCGTCGCATAAATTCAACTCTAACCATGTTTGATTATCCTAGAATGAAAACGCTACTAAACTACCCAAATGAGAGTTTAAGTGATCTGTACCATCCAAAATTAGGGTTAATTTGGTCCAGAACACACCAAAATGACCCATGCCAACTAGAAAATGTTAGTGAACTGAATTGGAGTTGA

mRNA sequence

TCAGAGCTTGTTGCGGTACCAGATGACTCCTTTATCAGAATTAGCATCCTCATCAGGCGCAACGTAAACACACTCCTTAGCTTCCCTCCAGATGGCCTTCAAAACAGGGGTCCTATCGAGCCGGTAATATTCTCCCAGTACTGGCTTCACCGCTTCCGTCGCCTCCTTCGCATGATAATGCGGCATCGTGGAGAACAAATGGTGAACCACATGCGTGTCCGTTATGTTATGAAACACTCTGTTCAGTACCCCATAGTCTCTGTCCACAGTCGCCAAGGCACCTCTCAGCCAATCCCATTCCGCAGCGTCGTAGTGCGGCAACGCTGGATGGGTGTGCTGCAAGTACGTGATCAAGACCAAAAACCCATTCACTATCAGCAACGGAATTCCGGACGGCCCGAGACGTTGAAGGCCAAGTACAAGGGCCAGCCCAGGGTGAGTGTTCCGAGGAGTGAAATGAGCCTCCCTGTCGGAGAAAGCGTGGTGACCGCACTCGTGAGCGATGACCCAGACGCCAGTGAGGATGCAGCCTTGGAAAACCCAGTAAAGGGGCCATGCAATGTAGGAGGCCGGGTGGGGGATAAGGGGCAAATAGGCAATGGCAAGGTAGAAGAACAGAGAGACGAAGGCGAGCAGCAGAACATTGGTCACGTGGAGGTGAATGGACCCCAAATGGATTATGGATCCACCCACATTTTCATAACACACCAAAATGACCCATGCCAACTAGAAAATGTTAGTGAACTGAATTGGAGTTGA

Coding sequence (CDS)

TCAGAGCTTGTTGCGGTACCAGATGACTCCTTTATCAGAATTAGCATCCTCATCAGGCGCAACGTAAACACACTCCTTAGCTTCCCTCCAGATGGCCTTCAAAACAGGGGTCCTATCGAGCCGGTAATATTCTCCCAGTACTGGCTTCACCGCTTCCGTCGCCTCCTTCGCATGATAATGCGGCATCGTGGAGAACAAATGGTGAACCACATGCGTGTCCGTTATGTTATGAAACACTCTGTTCAGTACCCCATAGTCTCTGTCCACAGTCGCCAAGGCACCTCTCAGCCAATCCCATTCCGCAGCGTCGTAGTGCGGCAACGCTGGATGGGTGTGCTGCAAGTACGTGATCAAGACCAAAAACCCATTCACTATCAGCAACGGAATTCCGGACGGCCCGAGACGTTGAAGGCCAAGTACAAGGGCCAGCCCAGGGTGAGTGTTCCGAGGAGTGAAATGAGCCTCCCTGTCGGAGAAAGCGTGGTGACCGCACTCGTGAGCGATGACCCAGACGCCAGTGAGGATGCAGCCTTGGAAAACCCAGTAAAGGGGCCATGCAATGTAGGAGGCCGGGTGGGGGATAAGGGGCAAATAGGCAATGGCAAGGTAGAAGAACAGAGAGACGAAGGCGAGCAGCAGAACATTGGTCACGTGGAGGTGAATGGACCCCAAATGGATTATGGATCCACCCACATTTTCATAACACACCAAAATGACCCATGCCAACTAGAAAATGTTAGTGAACTGAATTGGAGTTGA

Protein sequence

SELVAVPDDSFIRISILIRRNVNTLLSFPPDGLQNRGPIEPVIFSQYWLHRFRRLLRMIMRHRGEQMVNHMRVRYVMKHSVQYPIVSVHSRQGTSQPIPFRSVVVRQRWMGVLQVRDQDQKPIHYQQRNSGRPETLKAKYKGQPRVSVPRSEMSLPVGESVVTALVSDDPDASEDAALENPVKGPCNVGGRVGDKGQIGNGKVEEQRDEGEQQNIGHVEVNGPQMDYGSTHIFITHQNDPCQLENVSELNWS

Homology

[Close]

BLAST of CmoCh20G000590 vs. ExPASy TrEMBL
Match: B7ZYI4 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-13
Identity = 49/128 (38.28%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 2   ELVAVPDDSFIRISILIRRNVNTLLSFPPDGLQNRGPIEPVIFSQYWLHRFRRLLRMIMR 61
           EL+ VP+D+   + +    +V+ L    P  L NRG +E V+  +    R   L  +++R
Sbjct: 14  ELLVVPEDALAVLGL----DVDALPGLAPGRLGNRGRVEVVVVPEDGPDRLGGLHGVVVR 73

Query: 62  HRGEQMVNHMRVRYVMKHSVQYPIVSVHSRQGTSQPIPFRSVVVRQRWMGVLQVRDQDQK 121
           H GE++V  +RVR V++H+V+  +V+VH  Q  +QP+P   VVV +R +GVLQV D+ Q 
Sbjct: 74  HGGEEVVRDVRVRDVVEHAVEDAVVAVHGGQRAAQPVPLARVVVGERRVGVLQVGDEHQP 133

Query: 122 PIHYQQRN 130
            +H QQR+
Sbjct: 134 RVHDQQRH 137

[Close]

BLAST of CmoCh20G000590 vs. ExPASy TrEMBL
Match: A0A433DH44 (Uncharacterized protein OS=Jimgerdemannia flammicorona OX=994334 GN=BC936DRAFT_140253 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 29  PPDGLQNRGPIEPVIFSQYWLHRFRRLLRMIMRHRGEQMVNHMRVRYVMKHSVQYPIVSV 88
           PP    +   +  V  +Q +L   RRLLR++MRH  E+++ H+ V  V+   VQ P V  
Sbjct: 32  PPQRDWDGRVVVDVRLAQNFLDVARRLLRVVMRHLREEVMRHVGVGDVVMKVVQQPAVRP 91

Query: 89  HSRQG-TSQPIPFRSVVVRQRWMGVLQVRDQDQKPIHYQQRNS 131
            +RQ   +  +P R  VVRQ W+GVLQ  D+DQ  + +  RN+
Sbjct: 92  INRQSCAALEVPDRLTVVRQGWVGVLQKGDEDQPEVDHHVRNN 134

[Close]

BLAST of CmoCh20G000590 vs. ExPASy TrEMBL
Match: A0A433QZQ1 (Uncharacterized protein OS=Jimgerdemannia flammicorona OX=994334 GN=BC938DRAFT_473434 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 29  PPDGLQNRGPIEPVIFSQYWLHRFRRLLRMIMRHRGEQMVNHMRVRYVMKHSVQYPIVSV 88
           PP    +   +  V  +Q +L   RRLLR++MRH  E+++ H+ V  V+   VQ P V  
Sbjct: 32  PPQRDWDGRVVVDVRLAQNFLDVARRLLRVVMRHLREEVMRHVGVGDVVMKVVQQPAVRP 91

Query: 89  HSRQG-TSQPIPFRSVVVRQRWMGVLQVRDQDQKPIHYQQRNS 131
            +RQ   +  +P R  VVRQ W+GVLQ  D+DQ  + +  RN+
Sbjct: 92  INRQSCAALEVPDRLTVVRQGWVGVLQKGDEDQPEVDHHVRNN 134

[Close]

BLAST of CmoCh20G000590 vs. NCBI nr
Match: ACL52983.1 (unknown [Zea mays] >ACL53151.1 unknown [Zea mays] >ACL53170.1 unknown [Zea mays] >ACL53198.1 unknown [Zea mays] >ACN35830.1 unknown [Zea mays])

HSP 1 Score: 85.1 bits (209), Expect = 9.4e-13
Identity = 49/128 (38.28%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 2   ELVAVPDDSFIRISILIRRNVNTLLSFPPDGLQNRGPIEPVIFSQYWLHRFRRLLRMIMR 61
           EL+ VP+D+   + +    +V+ L    P  L NRG +E V+  +    R   L  +++R
Sbjct: 14  ELLVVPEDALAVLGL----DVDALPGLAPGRLGNRGRVEVVVVPEDGPDRLGGLHGVVVR 73

Query: 62  HRGEQMVNHMRVRYVMKHSVQYPIVSVHSRQGTSQPIPFRSVVVRQRWMGVLQVRDQDQK 121
           H GE++V  +RVR V++H+V+  +V+VH  Q  +QP+P   VVV +R +GVLQV D+ Q 
Sbjct: 74  HGGEEVVRDVRVRDVVEHAVEDAVVAVHGGQRAAQPVPLARVVVGERRVGVLQVGDEHQP 133

Query: 122 PIHYQQRN 130
            +H QQR+
Sbjct: 134 RVHDQQRH 137

[Close]

BLAST of CmoCh20G000590 vs. NCBI nr
Match: RUS35269.1 (hypothetical protein BC938DRAFT_473434 [Jimgerdemannia flammicorona])

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-05
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 29  PPDGLQNRGPIEPVIFSQYWLHRFRRLLRMIMRHRGEQMVNHMRVRYVMKHSVQYPIVSV 88
           PP    +   +  V  +Q +L   RRLLR++MRH  E+++ H+ V  V+   VQ P V  
Sbjct: 32  PPQRDWDGRVVVDVRLAQNFLDVARRLLRVVMRHLREEVMRHVGVGDVVMKVVQQPAVRP 91

Query: 89  HSRQG-TSQPIPFRSVVVRQRWMGVLQVRDQDQKPIHYQQRNS 131
            +RQ   +  +P R  VVRQ W+GVLQ  D+DQ  + +  RN+
Sbjct: 92  INRQSCAALEVPDRLTVVRQGWVGVLQKGDEDQPEVDHHVRNN 134

[Close]

BLAST of CmoCh20G000590 vs. NCBI nr
Match: RUP50129.1 (hypothetical protein BC936DRAFT_140253 [Jimgerdemannia flammicorona])

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-05
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 29  PPDGLQNRGPIEPVIFSQYWLHRFRRLLRMIMRHRGEQMVNHMRVRYVMKHSVQYPIVSV 88
           PP    +   +  V  +Q +L   RRLLR++MRH  E+++ H+ V  V+   VQ P V  
Sbjct: 32  PPQRDWDGRVVVDVRLAQNFLDVARRLLRVVMRHLREEVMRHVGVGDVVMKVVQQPAVRP 91

Query: 89  HSRQG-TSQPIPFRSVVVRQRWMGVLQVRDQDQKPIHYQQRNS 131
            +RQ   +  +P R  VVRQ W+GVLQ  D+DQ  + +  RN+
Sbjct: 92  INRQSCAALEVPDRLTVVRQGWVGVLQKGDEDQPEVDHHVRNN 134

The following BLAST results are available for this feature:

BLAST of CmoCh20G000590 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G000590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B7ZYI4	4.5e-13	38.28	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
A0A433DH44	1.6e-05	37.86	Uncharacterized protein OS=Jimgerdemannia flammicorona OX=994334 GN=BC936DRAFT_1...	[more]
A0A433QZQ1	1.6e-05	37.86	Uncharacterized protein OS=Jimgerdemannia flammicorona OX=994334 GN=BC938DRAFT_4...	[more]

BLAST of CmoCh20G000590 vs. NCBI nr


Match Name	E-value	Identity	Description
ACL52983.1	9.4e-13	38.28	unknown [Zea mays] >ACL53151.1 unknown [Zea mays] >ACL53170.1 unknown [Zea mays]...	[more]
RUS35269.1	3.2e-05	37.86	hypothetical protein BC938DRAFT_473434 [Jimgerdemannia flammicorona]	[more]
RUP50129.1	3.2e-05	37.86	hypothetical protein BC936DRAFT_140253 [Jimgerdemannia flammicorona]	[more]

BLAST of CmoCh20G000590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G000590.1	CmoCh20G000590.1	mRNA