CmoCh20G000270 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G000270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionYippee domain-containing protein
LocationCmo_Chr20: 195938 .. 196794 (+)
RNA-Seq ExpressionCmoCh20G000270
SyntenyCmoCh20G000270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATACCTCTCCTAACCTCACGTATATCAACTCCAAGAGAAGACTACTTATATAATTAGGGATATTTGAGTAAACTCTTCATCGATAAAGTGATACCGAAGCAGTAAAATTCAGTGTCTAGTTCAACCATGCGTGAGGGTTTTTTTAATTAATTGAAGGTGAGATTTCTAACATTTGATCTTTTGGATTAGATCATAACGCTTTAATTATTGAACTATGTTTCGATCAACAACATTCAACACGACGGGCTCATTGATCCAGCTCTAATGGTCTAAAATACCTTCCATCTATGAGGTAAGTCCCAACTTTAAGCCGCACGCCCCACACGTCCTTCGGTTTTCTTGACACGATTCTGTTCAATTACGCACGCAGCAGGCAGGCATTAGTTACAAGCGTTGCACATAAGGTGTTCGAAGCAATGCCAAAGACAGAGGACGAAGATCGATCGACCGCTCACCTGCCAACGTCGCCGGGGTTGATTATGCCGGAATTGACCCTGAGGCATGGAACCGAGGCTGCGGTCTTTATCATTTTGGGAGCCTCGACTACGATAACGGGGGAGCCGATCTCGAGTTTCCAACTCTTTGCCGGCGGCGTGGGGTCTGCTGCCGATGCACTTGATTCGCACTTCACGAGGCTTCGCGGTTGAGACCGAGTGCTTAAGCTGTTGGAGACGTTGAAGGAAGAGATGGAACTGACGATGCCGATGCCGATGCTTGGGCGTGGAATTGCTGTAGCAGAAGAAAGAGAAGTGGCCATTGGAACCGTATCTTATCACCAACGTTTCAATTCGAGGATATGTTTGGGAGTGGATATTGAGGTTAAAGCTTTTGTTTTGTCTTTTTTTTAAGCTCGAG

mRNA sequence

CCATACCTCTCCTAACCTCACGTATATCAACTCCAAGAGAAGACTACTTATATAATTAGGGATATTTGAGTAAACTCTTCATCGATAAAGTGATACCGAAGCAGTAAAATTCAGTGTCTAGTTCAACCATGCGTGAGGGTTTTTTTAATTAATTGAAGGTGAGATTTCTAACATTTGATCTTTTGGATTAGATCATAACGCTTTAATTATTGAACTATGTTTCGATCAACAACATTCAACACGACGGGCTCATTGATCCAGCTCTAATGGTCTAAAATACCTTCCATCTATGAGCAGGCAGGCATTAGTTACAAGCGTTGCACATAAGGTGTTCGAAGCAATGCCAAAGACAGAGGACGAAGATCGATCGACCGCTCACCTGCCAACGTCGCCGGGGTTGATTATGCCGGAATTGACCCTGAGGCATGGAACCGAGGCTGCGGTCTTTATCATTTTGGGAGCCTCGACTACGATAACGGGGGAGCCGATCTCGAGTTTCCAACTCTTTGCCGGCGGCGTGGGGTCTGCTGCCGATGCACTTGATTCGCACTTCACGAGGCTTCGCGGTTGAGACCGAGTGCTTAAGCTGTTGGAGACGTTGAAGGAAGAGATGGAACTGACGATGCCGATGCCGATGCTTGGGCGTGGAATTGCTGTAGCAGAAGAAAGAGAAGTGGCCATTGGAACCGTATCTTATCACCAACGTTTCAATTCGAGGATATGTTTGGGAGTGGATATTGAGGTTAAAGCTTTTGTTTTGTCTTTTTTTTAAGCTCGAG

Coding sequence (CDS)

ATGAGCAGGCAGGCATTAGTTACAAGCGTTGCACATAAGGTGTTCGAAGCAATGCCAAAGACAGAGGACGAAGATCGATCGACCGCTCACCTGCCAACGTCGCCGGGGTTGATTATGCCGGAATTGACCCTGAGGCATGGAACCGAGGCTGCGGTCTTTATCATTTTGGGAGCCTCGACTACGATAACGGGGGAGCCGATCTCGAGTTTCCAACTCTTTGCCGGCGGCGTGGGGTCTGCTGCCGATGCACTTGATTCGCACTTCACGAGGCTTCGCGGTTGA

Protein sequence

MSRQALVTSVAHKVFEAMPKTEDEDRSTAHLPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFTRLRG
Homology
BLAST of CmoCh20G000270 vs. ExPASy TrEMBL
Match: A0A7J9BXC5 (Yippee domain-containing protein (Fragment) OS=Gossypium gossypioides OX=34282 GN=Gogos_014045 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-09
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 30 HLPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFT 89
          +LPTSPGL  PEL LRHGT+AAVFII GASTTI G+PISS +L    +   A+  DSH  
Sbjct: 2  NLPTSPGLTRPELALRHGTDAAVFIIFGASTTIIGDPISSLEL----LFELAEG-DSHLI 58

Query: 90 RL 92
          RL
Sbjct: 62 RL 58

BLAST of CmoCh20G000270 vs. ExPASy TrEMBL
Match: A0A7J9GW06 (Yippee domain-containing protein (Fragment) OS=Gossypium harknessii OX=34285 GN=Gohar_012030 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-09
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 30 HLPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFT 89
          +LPTSPGL  PEL LRHGT+AAVFII GASTTI G+PISS +L    +   A+  DSH  
Sbjct: 2  NLPTSPGLTRPELALRHGTDAAVFIIFGASTTIMGDPISSLEL----LFELAEG-DSHLI 58

Query: 90 RL 92
          RL
Sbjct: 62 RL 58

BLAST of CmoCh20G000270 vs. ExPASy TrEMBL
Match: A0A7J9JCD5 (Yippee domain-containing protein (Fragment) OS=Gossypium armourianum OX=34283 GN=Goarm_015603 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 30 HLPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFT 89
          +LPTSPGL  PEL LRHGT+AAVFI  GASTTI G+PISS +L    +   A+  DSH  
Sbjct: 2  NLPTSPGLTRPELALRHGTDAAVFITFGASTTIMGDPISSLEL----LFELAEG-DSHLI 58

Query: 90 RL 92
          RL
Sbjct: 62 RL 58

BLAST of CmoCh20G000270 vs. ExPASy TrEMBL
Match: M4CQU4 (RING-type domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.8e-06
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 0

Query: 31 LPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFTR 90
          LPTSPGL  PEL LR G EAAVFI LGAST + G+P  S     GG    + A+  H T 
Sbjct: 9  LPTSPGLTKPELALRQGIEAAVFITLGASTMMIGDPTWSLDFGLGG----SFAVSQHLTV 67

Query: 91 LRG 94
           RG
Sbjct: 69 TRG 67

BLAST of CmoCh20G000270 vs. ExPASy TrEMBL
Match: A0A1J3G603 (Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=GA_TR10299_c0_g1_i1_g.33837 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.3e-05
Identity = 32/59 (54.24%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 31 LPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFT 90
          LPTSPGL  P L LR G EAAVFI LGAST + G+P  SF    GG    + A+  H T
Sbjct: 17 LPTSPGLTKPALALRQGIEAAVFITLGASTIMIGDPTWSFDFGRGG----SFAVSQHLT 71

BLAST of CmoCh20G000270 vs. NCBI nr
Match: MBA0801680.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 30 HLPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFT 89
          +LPTSPGL  PEL LRHGT+AAVFII GASTTI G+PISS +L    +   A+  DSH  
Sbjct: 2  NLPTSPGLTRPELALRHGTDAAVFIIFGASTTIMGDPISSLEL----LFELAEG-DSHLI 58

Query: 90 RL 92
          RL
Sbjct: 62 RL 58

BLAST of CmoCh20G000270 vs. NCBI nr
Match: MBA0740860.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 30 HLPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFT 89
          +LPTSPGL  PEL LRHGT+AAVFII GASTTI G+PISS +L    +   A+  DSH  
Sbjct: 2  NLPTSPGLTRPELALRHGTDAAVFIIFGASTTIIGDPISSLEL----LFELAEG-DSHLI 58

Query: 90 RL 92
          RL
Sbjct: 62 RL 58

BLAST of CmoCh20G000270 vs. NCBI nr
Match: MBA0831115.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-08
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 30 HLPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFT 89
          +LPTSPGL  PEL LRHGT+AAVFI  GASTTI G+PISS +L    +   A+  DSH  
Sbjct: 2  NLPTSPGLTRPELALRHGTDAAVFITFGASTTIMGDPISSLEL----LFELAEG-DSHLI 58

Query: 90 RL 92
          RL
Sbjct: 62 RL 58

BLAST of CmoCh20G000270 vs. NCBI nr
Match: KAG6761835.1 (hypothetical protein POTOM_035072 [Populus tomentosa])

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 39/69 (56.52%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 21  TEDEDRSTAHLPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSF-QLFAGG-VG 80
           T   +R   +LPTSPGL  P LT R G  AAV IILGAS T TG+PI S   LFAG  V 
Sbjct: 226 TTSREREKGYLPTSPGLTKPVLTRRQGMVAAVLIILGASITTTGDPIPSLGVLFAGKFVS 285

Query: 81  SAADALDSH 88
              D+LDSH
Sbjct: 286 DDDDSLDSH 294

BLAST of CmoCh20G000270 vs. NCBI nr
Match: KAF2580504.1 (hypothetical protein F2Q68_00000730 [Brassica cretica])

HSP 1 Score: 60.8 bits (146), Expect = 7.0e-06
Identity = 39/77 (50.65%), Postives = 43/77 (55.84%), Query Frame = 0

Query: 20  KTEDEDRSTAH---LPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGG 79
           K E ED   A    LPTSPGL  PEL LR G EAAVFI LGAST + G+P  SF    GG
Sbjct: 356 KDEVEDLEKAEVGDLPTSPGLTKPELALRQGIEAAVFITLGASTMMIGDPTWSFDFGRGG 415

Query: 80  VGSAADALDSHFTRLRG 94
               +  +  H T  RG
Sbjct: 416 ----SFPVSQHLTVTRG 428

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J9BXC57.3e-0962.90Yippee domain-containing protein (Fragment) OS=Gossypium gossypioides OX=34282 G... [more]
A0A7J9GW067.3e-0962.90Yippee domain-containing protein (Fragment) OS=Gossypium harknessii OX=34285 GN=... [more]
A0A7J9JCD52.8e-0861.29Yippee domain-containing protein (Fragment) OS=Gossypium armourianum OX=34283 GN... [more]
M4CQU49.8e-0653.97RING-type domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 ... [more]
A0A1J3G6038.3e-0554.24Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=GA_TR10299_c0_g1_i1... [more]
Match NameE-valueIdentityDescription
MBA0801680.11.5e-0862.90hypothetical protein [Gossypium harknessii][more]
MBA0740860.11.5e-0862.90hypothetical protein [Gossypium gossypioides][more]
MBA0831115.15.7e-0861.29hypothetical protein [Gossypium armourianum][more]
KAG6761835.11.4e-0656.52hypothetical protein POTOM_035072 [Populus tomentosa][more]
KAF2580504.17.0e-0650.65hypothetical protein F2Q68_00000730 [Brassica cretica][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G000270.1CmoCh20G000270.1mRNA