CmoCh19G011080 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G011080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	Cmo_Chr19: 9438196 .. 9439680 (+)
RNA-Seq Expression	CmoCh19G011080
Synteny	CmoCh19G011080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTGTTCTTCCGCTTTTGCTCAGGACCTCCCCACAAGTGCCGACAGCAAAGCCACGTATTTCAGATAAGCCTTCGAACATATGTAGACGGCACAATTAAATGGGTTCGAGATCGTGGTCTTGATCATGCTGTTGAGAGAGAGAAGAACCTTCTGCCGGTGATGAATATAAAGAATTTTATAAAATCAGAGCCGTCCAAGTCTGTTCCAGTTTCCATCATAACTCAGAAAAGGGAAGTTCTAAGGATTCCGACGCGTCCCATTGATTTGATCAGAAAATATCCCACCATTTTTGAAGAATTTCTCCCTGGAGGCATTGGCATTCAACCTCATGTCCGGCTAACTTCTCAGGTCCTTGAACTTGATGCTGAAGAGCAGTTAACGTATCAAAGTGAAATTTGTCGACAACAAGCTGCAGATCGACTTGTGAAGCTCTTGATGCTATCGAGAGTCCATAAAATACCTTTAAGTATCATTGATCAATTGAAATGGGAGCTGGGTCTTCCCAAAGATTATGTTCAAAGTATAGTTCCTGAGTTTCCGGATTACTTCAAAGTTGTAGGACACCAAAATTTTGCATCTGGATGGGGCACTATGCAAGCGTTGGAATTGGTATGTTGGAACAATGAATTGGCCACTTCAGTTTTAGAGAAGATGGCCGCAAAAGGAAAACCCGGCAGCACATCGAAGGGAATGCCTATTACTTTTCCTATGAAATACTCAAACGGGTTTGAGATGGACAAGAAGTTCAAGAAGTGGGTGGATGAGTGGCAAAAGCTACCTTACATTTCTCCCTACATAAATGCAACACATCTCCCTCCAAATAGCGATGAATCTGATAAGTGGTCTGTTGCGATTTTACACGAGTTTCTTCATATGCTTGTCACGAAGAAGACCGAGAAGGAAACTGTATTGGGGATAGGAGAGTACTTTGGCCTTCGGTCAAGGTTTAAGAGAGCATTGCTTCACCATCCAGGGATATTCTATCTATCGAGTAAGGCTGGAACCTACACAGTTGTCTTGAAAGAAGCGTATAAGAGGGGTTCGGTAATTGAGAGTAGCCCCTTGATGATCATTAGAAACAAGTATCTTCACCTTATGAACACAGTGAAGGAAGACAGTAAAACCACTAGCGAGCATAAGAGTACTCGCCAACAGAAGCAAGAACAGAAAGAAGGGTCAGATGATGGATCTGGGAAACAGAATGAAGCTGAATTATTCAACTCTGATGATGAAGATGAAGATGAAGAGGAAGACCAAGGTGAAGATGAAAATGCTAGTAGTAATCAAAACATTCAGGCTGATCGAAAAGAGGATGGACGTAATAAGAGACATGTTGATCTCAAAGAAAATTCTGTTAGAGACAGGATGCGATCATCAAAGAGAAGGAACTTGAGTGCGAAAAGACCTTCTAGGGATAGGGATGCTAAAAGAGAGAGGTCAAATATGAGTAAGAGATCTTCAGTGAGGACAAAGGTTTAG

mRNA sequence

ATGTCTCTGTTCTTCCGCTTTTGCTCAGGACCTCCCCACAAGTGCCGACAGCAAAGCCACGTATTTCAGATAAGCCTTCGAACATATGTAGACGGCACAATTAAATGGGTTCGAGATCGTGGTCTTGATCATGCTGTTGAGAGAGAGAAGAACCTTCTGCCGGTGATGAATATAAAGAATTTTATAAAATCAGAGCCGTCCAAGTCTGTTCCAGTTTCCATCATAACTCAGAAAAGGGAAGTTCTAAGGATTCCGACGCGTCCCATTGATTTGATCAGAAAATATCCCACCATTTTTGAAGAATTTCTCCCTGGAGGCATTGGCATTCAACCTCATGTCCGGCTAACTTCTCAGGTCCTTGAACTTGATGCTGAAGAGCAGTTAACGTATCAAAGTGAAATTTGTCGACAACAAGCTGCAGATCGACTTGTGAAGCTCTTGATGCTATCGAGAGTCCATAAAATACCTTTAAGTATCATTGATCAATTGAAATGGGAGCTGGGTCTTCCCAAAGATTATGTTCAAAGTATAGTTCCTGAGTTTCCGGATTACTTCAAAGTTGTAGGACACCAAAATTTTGCATCTGGATGGGGCACTATGCAAGCGTTGGAATTGGTATGTTGGAACAATGAATTGGCCACTTCAGTTTTAGAGAAGATGGCCGCAAAAGGAAAACCCGGCAGCACATCGAAGGGAATGCCTATTACTTTTCCTATGAAATACTCAAACGGGTTTGAGATGGACAAGAAGTTCAAGAAGTGGGTGGATGAGTGGCAAAAGCTACCTTACATTTCTCCCTACATAAATGCAACACATCTCCCTCCAAATAGCGATGAATCTGATAAGTGGTCTGTTGCGATTTTACACGAGTTTCTTCATATGCTTGTCACGAAGAAGACCGAGAAGGAAACTGTATTGGGGATAGGAGAGTACTTTGGCCTTCGGTCAAGGTTTAAGAGAGCATTGCTTCACCATCCAGGGATATTCTATCTATCGAGTAAGGCTGGAACCTACACAGTTGTCTTGAAAGAAGCGTATAAGAGGGGTTCGGTAATTGAGAGTAGCCCCTTGATGATCATTAGAAACAAGTATCTTCACCTTATGAACACAGTGAAGGAAGACAGTAAAACCACTAGCGAGCATAAGAGTACTCGCCAACAGAAGCAAGAACAGAAAGAAGGGTCAGATGATGGATCTGGGAAACAGAATGAAGCTGAATTATTCAACTCTGATGATGAAGATGAAGATGAAGAGGAAGACCAAGGTGAAGATGAAAATGCTAGTAGTAATCAAAACATTCAGGCTGATCGAAAAGAGGATGGACGTAATAAGAGACATGTTGATCTCAAAGAAAATTCTGTTAGAGACAGGATGCGATCATCAAAGAGAAGGAACTTGAGTGCGAAAAGACCTTCTAGGGATAGGGATGCTAAAAGAGAGAGGTCAAATATGAGTAAGAGATCTTCAGTGAGGACAAAGGTTTAG

Coding sequence (CDS)

ATGTCTCTGTTCTTCCGCTTTTGCTCAGGACCTCCCCACAAGTGCCGACAGCAAAGCCACGTATTTCAGATAAGCCTTCGAACATATGTAGACGGCACAATTAAATGGGTTCGAGATCGTGGTCTTGATCATGCTGTTGAGAGAGAGAAGAACCTTCTGCCGGTGATGAATATAAAGAATTTTATAAAATCAGAGCCGTCCAAGTCTGTTCCAGTTTCCATCATAACTCAGAAAAGGGAAGTTCTAAGGATTCCGACGCGTCCCATTGATTTGATCAGAAAATATCCCACCATTTTTGAAGAATTTCTCCCTGGAGGCATTGGCATTCAACCTCATGTCCGGCTAACTTCTCAGGTCCTTGAACTTGATGCTGAAGAGCAGTTAACGTATCAAAGTGAAATTTGTCGACAACAAGCTGCAGATCGACTTGTGAAGCTCTTGATGCTATCGAGAGTCCATAAAATACCTTTAAGTATCATTGATCAATTGAAATGGGAGCTGGGTCTTCCCAAAGATTATGTTCAAAGTATAGTTCCTGAGTTTCCGGATTACTTCAAAGTTGTAGGACACCAAAATTTTGCATCTGGATGGGGCACTATGCAAGCGTTGGAATTGGTATGTTGGAACAATGAATTGGCCACTTCAGTTTTAGAGAAGATGGCCGCAAAAGGAAAACCCGGCAGCACATCGAAGGGAATGCCTATTACTTTTCCTATGAAATACTCAAACGGGTTTGAGATGGACAAGAAGTTCAAGAAGTGGGTGGATGAGTGGCAAAAGCTACCTTACATTTCTCCCTACATAAATGCAACACATCTCCCTCCAAATAGCGATGAATCTGATAAGTGGTCTGTTGCGATTTTACACGAGTTTCTTCATATGCTTGTCACGAAGAAGACCGAGAAGGAAACTGTATTGGGGATAGGAGAGTACTTTGGCCTTCGGTCAAGGTTTAAGAGAGCATTGCTTCACCATCCAGGGATATTCTATCTATCGAGTAAGGCTGGAACCTACACAGTTGTCTTGAAAGAAGCGTATAAGAGGGGTTCGGTAATTGAGAGTAGCCCCTTGATGATCATTAGAAACAAGTATCTTCACCTTATGAACACAGTGAAGGAAGACAGTAAAACCACTAGCGAGCATAAGAGTACTCGCCAACAGAAGCAAGAACAGAAAGAAGGGTCAGATGATGGATCTGGGAAACAGAATGAAGCTGAATTATTCAACTCTGATGATGAAGATGAAGATGAAGAGGAAGACCAAGGTGAAGATGAAAATGCTAGTAGTAATCAAAACATTCAGGCTGATCGAAAAGAGGATGGACGTAATAAGAGACATGTTGATCTCAAAGAAAATTCTGTTAGAGACAGGATGCGATCATCAAAGAGAAGGAACTTGAGTGCGAAAAGACCTTCTAGGGATAGGGATGCTAAAAGAGAGAGGTCAAATATGAGTAAGAGATCTTCAGTGAGGACAAAGGTTTAG

Protein sequence

MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEEDQGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRERSNMSKRSSVRTKV

Homology

[Close]

BLAST of CmoCh19G011080 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-53
Identity = 126/344 (36.63%), Postives = 196/344 (56.98%), Query Frame = 0


Query: 27  RTYVDGTIKWVRDRGLDHA--VEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRI 86
           RTYVD  +KW RD   D+   + R   L  V+++KN I  EP++ +P+S I++K     +
Sbjct: 22  RTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDV 81

Query: 87  PTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLV 146
            T+    +RK+P+IFEEF+     + P  RLT +  ELD +E++ YQ+        DRL 
Sbjct: 82  STKIAHFLRKFPSIFEEFVGPEYNL-PWFRLTPEATELDRQERVVYQTS--ADDLRDRLK 141

Query: 147 KLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALE 206
           KL+++S+ + +PLSI+  +KW LGLP DY+Q     FPD   +     F      ++ L 
Sbjct: 142 KLILMSKDNVLPLSIVQGMKWYLGLPDDYLQ-----FPD-MNLDSSFRFVDMEDGVKGLA 201

Query: 207 LVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYI 266
           +     +   SVL+K A K + G  S    I FP+  S G  +  K + W+ E+QKLPY+
Sbjct: 202 VDYNGGDKVLSVLQKNAMKKRRGEVSL-EEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYV 261

Query: 267 SPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLH 326
           SPY + + L P+SD ++K  V  LHE L + V    E++ +L + ++FGL  +  +A   
Sbjct: 262 SPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFER 321

Query: 327 HPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLM 369
           HP IFYLS K  T T +L+E Y+  + +E+ P++ +R KY+ LM
Sbjct: 322 HPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLM 355

[Close]

BLAST of CmoCh19G011080 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.9e-30
Identity = 99/359 (27.58%), Postives = 177/359 (49.30%), Query Frame = 0


Query: 37  VRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPTR---PIDLIR 96
           VRD G D+ +E EK +  V+   + I S+P+ ++ +S++      L +  +   P   + 
Sbjct: 47  VRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLL 106

Query: 97  KYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAAD---RLVKLLMLS 156
           K+P +FE      I   P  R+    L   A +Q+ ++ E    Q  D   RL KL+M+S
Sbjct: 107 KFPHVFE------IYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMS 166

Query: 157 RVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELVCWNN 216
              +I L  +   + E GLP+D+  S++ + P +F+++  +     +     +E+V  + 
Sbjct: 167 NTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKY-----IEIVEKDP 226

Query: 217 ELATSVLEKM--AAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYISPYI 276
            L+   +E++        G  ++ +  +F + +  GF++ K F+  V +WQ+LPY SPY 
Sbjct: 227 NLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYE 286

Query: 277 NATHLPPNSDES----DKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLH 336
           + +     S E+    +K SVA +HE L + V KK   E +        L  + K  LL 
Sbjct: 287 DISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQ 346

Query: 337 HPGIFYLSSKAG---TYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSE 381
           H GIFY+S++      +TV L+E YKRG ++E + + + R +   L+      +K  +E
Sbjct: 347 HQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAE 394

[Close]

BLAST of CmoCh19G011080 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-29
Identity = 112/402 (27.86%), Postives = 195/402 (48.51%), Query Frame = 0


Query: 26  LRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRI- 85
           L       +K  ++   D+ ++R+K L  V+ ++N + S P + + +  + + R  L + 
Sbjct: 53  LAVVAQAAVKRRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGLT 112

Query: 86  -PTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRL 145
              R I L++++P +FE    G   ++  +   ++ L LD E  L  +SE     A  +L
Sbjct: 113 RKRRLIALLKRFPGVFEVVEEGVYSLRFRLTPAAERLYLD-ELHLKNESE---GLAVTKL 172

Query: 146 VKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQAL 205
            KLLM+S+  +I +  I  LK +LGLP ++  +I   +P YF+VV       G G    L
Sbjct: 173 RKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVV---QMDRGPG----L 232

Query: 206 ELVCWNNELATSVLEKMAAKGKP-GSTSKGMPITFPMKYS-----NGFEMDKKFKKWVDE 265
           EL  W+ ELA S  E    + +      + + I  P+K++      G ++ +   + V +
Sbjct: 233 ELTHWDPELAVSAAEVAEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQ 292

Query: 266 WQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSR 325
           ++++PYISPY + +HL   S E +K +  ++HE L + + K+T  + +    E F     
Sbjct: 293 FKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQS 352

Query: 326 FKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSK- 385
            +  L+ HP +FY+S K    +V L+EAYK   ++E S L++++ K   L+   +   + 
Sbjct: 353 LRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALVAVPRFPRRG 412

Query: 386 ---TTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDE 416
              T+ E   T    Q   EGSD              DDEDE
Sbjct: 413 VPATSEEADRTNGAAQMLSEGSD------------VEDDEDE 431

[Close]

BLAST of CmoCh19G011080 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.1e-27
Identity = 110/425 (25.88%), Postives = 208/425 (48.94%), Query Frame = 0


Query: 34  IKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRI--PTRPIDL 93
           +K  ++   D  ++R+K L  V+ ++N + ++P + + +  + + R  L +    R I L
Sbjct: 55  VKRRKEAPFDTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRLIAL 114

Query: 94  IRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLVKLLMLSR 153
           +R++P +F+    G   ++  +   ++ L LD E +L  +SE     A  +L KLLM+S+
Sbjct: 115 LRRFPGVFDVVEEGVYSLRFRLTPAAERLYLD-ELRLRNESE---GLAVAKLRKLLMMSQ 174

Query: 154 VHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELVCWNNE 213
             +I +  +  LK +LGLP ++  ++   +P YF+VV             ALEL  W+ E
Sbjct: 175 EKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRMDR-------GPALELTHWDPE 234

Query: 214 LATSVLEKMAAKGKP-GSTSKGMPITFPMKYS-----NGFEMDKKFKKWVDEWQKLPYIS 273
           LA S  E    + +   +  + + I  P+K++      G ++ +   + +  ++++PYIS
Sbjct: 235 LAVSAAELAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMPYIS 294

Query: 274 PYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHH 333
           PY + +HL   SDE +K +  ++HE L + V K+T  + +    E F      +  ++ H
Sbjct: 295 PYADFSHLRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMIIRH 354

Query: 334 PGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHL-----------MNTVKED 393
           P +FY+S K    +V L+EAYK   ++E + L++++ K   L           + T +E 
Sbjct: 355 PDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAVPRFPRRAAVGTGEEA 414

Query: 394 SKTTSEHKSTRQQKQEQKEGSDDG-----------SGKQNEAELFNSD---DEDEDEEED 426
                  +S  Q   E+ +  D+G           SG +++A+    D    E++D   D
Sbjct: 415 EGMNGSLQSRDQVSDEEYDDEDEGLSDMEDLISELSGGKSDADYEWGDGWFGENDDSPPD 468

[Close]

BLAST of CmoCh19G011080 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.8e-26
Identity = 122/455 (26.81%), Postives = 217/455 (47.69%), Query Frame = 0


Query: 30  VDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPTRP- 89
           V   +K  ++   D  V+R+K L  V+NI+  + S+P + + +  + + R  L +  R  
Sbjct: 72  VRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRR 131

Query: 90  -IDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLVKLL 149
            I L+RKYP +FE    G   ++   ++TS+   L  +E +  ++E+       +L KL+
Sbjct: 132 FIALLRKYPGVFEIVEEGAYSLR--FKMTSEAERLYLDE-MRIRNEL-EDVLVVKLRKLV 191

Query: 150 MLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELVC 209
           M+S   +I L  I  LK +LGLP ++  +I   +P YF+VV             ALEL  
Sbjct: 192 MMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPR-------GPALELTH 251

Query: 210 WNNELATSVLEKMAAKGKP-GSTSKGMPITFPMKYS-----NGFEMDKKFKKWVDEWQKL 269
           W+ ELA S  E      +   S  + + I  P K++      G  + K   + + +++ +
Sbjct: 252 WDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDM 311

Query: 270 PYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRA 329
            YISPY + +HL   + E +K +  ++HE L +   K+T  + +    E F    + +  
Sbjct: 312 QYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGM 371

Query: 330 LLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEH 389
           L+ HP +FY+S K    +V L+EAY+   +I+  PL +++ K   L++  +         
Sbjct: 372 LIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPR------FPR 431

Query: 390 KSTRQQKQEQKEGSDDGSGKQNEAELFNSDDE---DED---EEEDQGEDENASSNQNIQA 449
           +   ++ +E +E   DGS    E E   SD E   D D   E ED G D++     +   
Sbjct: 432 RGGPRKDEEGREVEIDGSDADGEEEEEESDAEEWSDVDGYLEGEDGGNDDDGDWTDDEGE 491

Query: 450 DRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKR 471
           +      +    D +E+SV+  +  S R++ S ++
Sbjct: 492 EDVPPNFDDDDEDEEEDSVKIGLSPSSRKSSSPRK 509

[Close]

BLAST of CmoCh19G011080 vs. ExPASy TrEMBL
Match: A0A6J1GKN4 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC111455191 PE=4 SV=1)

HSP 1 Score: 957.2 bits (2473), Expect = 2.6e-275
Identity = 494/494 (100.00%), Postives = 494/494 (100.00%), Query Frame = 0


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN
Sbjct: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL
Sbjct: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE
Sbjct: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK
Sbjct: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII
Sbjct: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360

Query: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEED 420
           RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEED
Sbjct: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEED 420

Query: 421 QGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRE 480
           QGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRE
Sbjct: 421 QGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRE 480

Query: 481 RSNMSKRSSVRTKV 495
           RSNMSKRSSVRTKV
Sbjct: 481 RSNMSKRSSVRTKV 494

[Close]

BLAST of CmoCh19G011080 vs. ExPASy TrEMBL
Match: A0A6J1HW55 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111468390 PE=4 SV=1)

HSP 1 Score: 905.2 bits (2338), Expect = 1.2e-259
Identity = 474/498 (95.18%), Postives = 483/498 (96.99%), Query Frame = 0


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           MSLFFRFCS PPHKCRQQSHVFQISLRTY DGTIKWVRDRGLDHAVEREKNLLPVMNIKN
Sbjct: 1   MSLFFRFCSVPPHKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL
Sbjct: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLT QSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE
Sbjct: 121 ELDAEEQLTNQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASGWGT QALELVCWNNELATSVLEKMAAKGKPGSTSKGM ITFPM 
Sbjct: 181 FPDYFKVVGHQNFASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMN 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY +ATHLPP+SDESDKWSVAILHEFLHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII
Sbjct: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360

Query: 361 RNKYLHLMNTVKEDSKTT-SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS---DDEDED 420
           RNKYLHLMNTVKEDSKTT SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS   +DEDED
Sbjct: 361 RNKYLHLMNTVKEDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSANEDEDED 420

Query: 421 EEEDQGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRD 480
           E+ED+GE E+ASSN NIQADRKEDGR+KRHVDLKEN+VRDRMRSSKR+N SAKRPSRDRD
Sbjct: 421 EDEDEGEGEDASSNHNIQADRKEDGRSKRHVDLKENAVRDRMRSSKRKNSSAKRPSRDRD 480

Query: 481 AKRERSNMSKRSSVRTKV 495
           AKRERSNMSKR SVRTKV
Sbjct: 481 AKRERSNMSKRYSVRTKV 498

[Close]

BLAST of CmoCh19G011080 vs. ExPASy TrEMBL
Match: A0A6J1HXK3 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468390 PE=4 SV=1)

HSP 1 Score: 902.9 bits (2332), Expect = 5.9e-259
Identity = 474/504 (94.05%), Postives = 483/504 (95.83%), Query Frame = 0


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           MSLFFRFCS PPHKCRQQSHVFQISLRTY DGTIKWVRDRGLDHAVEREKNLLPVMNIKN
Sbjct: 1   MSLFFRFCSVPPHKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL
Sbjct: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLT QSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE
Sbjct: 121 ELDAEEQLTNQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASGWGT QALELVCWNNELATSVLEKMAAKGKPGSTSKGM ITFPM 
Sbjct: 181 FPDYFKVVGHQNFASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMN 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY +ATHLPP+SDESDKWSVAILHEFLHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII
Sbjct: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360

Query: 361 RNKYLHLMNTVKEDSKTT-SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS--------- 420
           RNKYLHLMNTVKEDSKTT SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS         
Sbjct: 361 RNKYLHLMNTVKEDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSANEDEDED 420

Query: 421 DDEDEDEEEDQGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKR 480
           +DEDEDE+ED+GE E+ASSN NIQADRKEDGR+KRHVDLKEN+VRDRMRSSKR+N SAKR
Sbjct: 421 EDEDEDEDEDEGEGEDASSNHNIQADRKEDGRSKRHVDLKENAVRDRMRSSKRKNSSAKR 480

Query: 481 PSRDRDAKRERSNMSKRSSVRTKV 495
           PSRDRDAKRERSNMSKR SVRTKV
Sbjct: 481 PSRDRDAKRERSNMSKRYSVRTKV 504

[Close]

BLAST of CmoCh19G011080 vs. ExPASy TrEMBL
Match: A0A6J1I0R6 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111468390 PE=4 SV=1)

HSP 1 Score: 899.8 bits (2324), Expect = 5.0e-258
Identity = 471/495 (95.15%), Postives = 480/495 (96.97%), Query Frame = 0


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           MSLFFRFCS PPHKCRQQSHVFQISLRTY DGTIKWVRDRGLDHAVEREKNLLPVMNIKN
Sbjct: 1   MSLFFRFCSVPPHKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL
Sbjct: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLT QSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE
Sbjct: 121 ELDAEEQLTNQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASGWGT QALELVCWNNELATSVLEKMAAKGKPGSTSKGM ITFPM 
Sbjct: 181 FPDYFKVVGHQNFASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMN 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY +ATHLPP+SDESDKWSVAILHEFLHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII
Sbjct: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360

Query: 361 RNKYLHLMNTVKEDSKTT-SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEE 420
           RNKYLHLMNTVKEDSKTT SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS   +EDE+E
Sbjct: 361 RNKYLHLMNTVKEDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS-SANEDEDE 420

Query: 421 DQGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKR 480
           D+GE E+ASSN NIQADRKEDGR+KRHVDLKEN+VRDRMRSSKR+N SAKRPSRDRDAKR
Sbjct: 421 DEGEGEDASSNHNIQADRKEDGRSKRHVDLKENAVRDRMRSSKRKNSSAKRPSRDRDAKR 480

Query: 481 ERSNMSKRSSVRTKV 495
           ERSNMSKR SVRTKV
Sbjct: 481 ERSNMSKRYSVRTKV 494

[Close]

BLAST of CmoCh19G011080 vs. ExPASy TrEMBL
Match: A0A6J1HZQ5 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468390 PE=4 SV=1)

HSP 1 Score: 894.0 bits (2309), Expect = 2.7e-256
Identity = 474/516 (91.86%), Postives = 483/516 (93.60%), Query Frame = 0


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           MSLFFRFCS PPHKCRQQSHVFQISLRTY DGTIKWVRDRGLDHAVEREKNLLPVMNIKN
Sbjct: 1   MSLFFRFCSVPPHKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL
Sbjct: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLT QSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE
Sbjct: 121 ELDAEEQLTNQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASGWGT QALELVCWNNELATSVLEKMAAKGKPGSTSKGM ITFPM 
Sbjct: 181 FPDYFKVVGHQNFASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMN 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY +ATHLPP+SDESDKWSVAILHEFLHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII
Sbjct: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360

Query: 361 RNKYLHLMNTVKEDSKTT-SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS--------- 420
           RNKYLHLMNTVKEDSKTT SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS         
Sbjct: 361 RNKYLHLMNTVKEDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSANEDEDED 420

Query: 421 DDEDEDEEEDQ------------GEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRM 480
           +DEDEDE+ED+            GE E+ASSN NIQADRKEDGR+KRHVDLKEN+VRDRM
Sbjct: 421 EDEDEDEDEDEGEGEGEGEDEDVGEGEDASSNHNIQADRKEDGRSKRHVDLKENAVRDRM 480

Query: 481 RSSKRRNLSAKRPSRDRDAKRERSNMSKRSSVRTKV 495
           RSSKR+N SAKRPSRDRDAKRERSNMSKR SVRTKV
Sbjct: 481 RSSKRKNSSAKRPSRDRDAKRERSNMSKRYSVRTKV 516

[Close]

BLAST of CmoCh19G011080 vs. NCBI nr
Match: XP_022952527.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata])

HSP 1 Score: 957.2 bits (2473), Expect = 5.5e-275
Identity = 494/494 (100.00%), Postives = 494/494 (100.00%), Query Frame = 0


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN
Sbjct: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL
Sbjct: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE
Sbjct: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK
Sbjct: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII
Sbjct: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360

Query: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEED 420
           RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEED
Sbjct: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEED 420

Query: 421 QGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRE 480
           QGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRE
Sbjct: 421 QGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRE 480

Query: 481 RSNMSKRSSVRTKV 495
           RSNMSKRSSVRTKV
Sbjct: 481 RSNMSKRSSVRTKV 494

[Close]

BLAST of CmoCh19G011080 vs. NCBI nr
Match: KAG7012049.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 921.4 bits (2380), Expect = 3.3e-264
Identity = 483/503 (96.02%), Postives = 488/503 (97.02%), Query Frame = 0


Query: 3   LFFRF-------CSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPV 62
           LFF F        +GPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPV
Sbjct: 340 LFFLFRHPPSTASAGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPV 399

Query: 63  MNIKNFIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRL 122
           MNIKNFIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRL
Sbjct: 400 MNIKNFIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRL 459

Query: 123 TSQVLELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQ 182
           TSQVLELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQ
Sbjct: 460 TSQVLELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQ 519

Query: 183 SIVPEFPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPI 242
           SIVPEFPDYFKVVGHQNFASGWGTMQALELVCW+NELATSVLEKMAAKGKPGSTSKG+ +
Sbjct: 520 SIVPEFPDYFKVVGHQNFASGWGTMQALELVCWSNELATSVLEKMAAKGKPGSTSKGIHV 579

Query: 243 TFPMKYSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHML 302
           TFPMKYSNGFEMDKKFKKWVDEWQKLPYISPY NATHLPPNSDESDKWSVAILHEFLHML
Sbjct: 580 TFPMKYSNGFEMDKKFKKWVDEWQKLPYISPYENATHLPPNSDESDKWSVAILHEFLHML 639

Query: 303 VTKKTEKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESS 362
           VTKKTEKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESS
Sbjct: 640 VTKKTEKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESS 699

Query: 363 PLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDED- 422
           PLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDED 
Sbjct: 700 PLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDE 759

Query: 423 ---EDEEEDQGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRP 482
              EDEEEDQGEDENASSNQNIQADRKEDGR+KRHVDLKENSVRDRMRSSKRRNLSAKRP
Sbjct: 760 DEEEDEEEDQGEDENASSNQNIQADRKEDGRSKRHVDLKENSVRDRMRSSKRRNLSAKRP 819

Query: 483 SRDRDAKRERSNMSKRSSVRTKV 495
           SRDRDAKRERSNMSKRSSVRTKV
Sbjct: 820 SRDRDAKRERSNMSKRSSVRTKV 842

[Close]

BLAST of CmoCh19G011080 vs. NCBI nr
Match: XP_023554109.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo] >XP_023554110.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 911.8 bits (2355), Expect = 2.6e-261
Identity = 476/506 (94.07%), Postives = 487/506 (96.25%), Query Frame = 0


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN
Sbjct: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL
Sbjct: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE
Sbjct: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASGWGTMQALELVCW+NELATSVLEKMAAKGKPGSTSKGM +TFPMK
Sbjct: 181 FPDYFKVVGHQNFASGWGTMQALELVCWSNELATSVLEKMAAKGKPGSTSKGMHVTFPMK 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY NATHLPPNSDESDKWSVAILHEFLHML+TKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYENATHLPPNSDESDKWSVAILHEFLHMLITKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII
Sbjct: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360

Query: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS---DDEDEDE 420
           RNKYLHLMNTVKED KTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS   +D++EDE
Sbjct: 361 RNKYLHLMNTVKEDGKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSDDEDDEEDE 420

Query: 421 EEDQGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLS---------A 480
           EEDQGEDE+ASSN NIQADRKEDG +KR+VDLKEN+VRDRMRSSKR+N S         A
Sbjct: 421 EEDQGEDEDASSNHNIQADRKEDGPSKRYVDLKENAVRDRMRSSKRKNSSAKRPSRDRDA 480

Query: 481 KRPSRDRDAKRERSNMSKRSSVRTKV 495
           KRPSRDRDAKRERSNMSKR SVRTKV
Sbjct: 481 KRPSRDRDAKRERSNMSKRYSVRTKV 506

[Close]

BLAST of CmoCh19G011080 vs. NCBI nr
Match: XP_022969362.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 [Cucurbita maxima])

HSP 1 Score: 905.2 bits (2338), Expect = 2.5e-259
Identity = 474/498 (95.18%), Postives = 483/498 (96.99%), Query Frame = 0


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           MSLFFRFCS PPHKCRQQSHVFQISLRTY DGTIKWVRDRGLDHAVEREKNLLPVMNIKN
Sbjct: 1   MSLFFRFCSVPPHKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL
Sbjct: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLT QSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE
Sbjct: 121 ELDAEEQLTNQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASGWGT QALELVCWNNELATSVLEKMAAKGKPGSTSKGM ITFPM 
Sbjct: 181 FPDYFKVVGHQNFASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMN 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY +ATHLPP+SDESDKWSVAILHEFLHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII
Sbjct: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360

Query: 361 RNKYLHLMNTVKEDSKTT-SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS---DDEDED 420
           RNKYLHLMNTVKEDSKTT SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS   +DEDED
Sbjct: 361 RNKYLHLMNTVKEDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSANEDEDED 420

Query: 421 EEEDQGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRD 480
           E+ED+GE E+ASSN NIQADRKEDGR+KRHVDLKEN+VRDRMRSSKR+N SAKRPSRDRD
Sbjct: 421 EDEDEGEGEDASSNHNIQADRKEDGRSKRHVDLKENAVRDRMRSSKRKNSSAKRPSRDRD 480

Query: 481 AKRERSNMSKRSSVRTKV 495
           AKRERSNMSKR SVRTKV
Sbjct: 481 AKRERSNMSKRYSVRTKV 498

[Close]

BLAST of CmoCh19G011080 vs. NCBI nr
Match: XP_022969361.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 902.9 bits (2332), Expect = 1.2e-258
Identity = 474/504 (94.05%), Postives = 483/504 (95.83%), Query Frame = 0


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           MSLFFRFCS PPHKCRQQSHVFQISLRTY DGTIKWVRDRGLDHAVEREKNLLPVMNIKN
Sbjct: 1   MSLFFRFCSVPPHKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL
Sbjct: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLT QSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE
Sbjct: 121 ELDAEEQLTNQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASGWGT QALELVCWNNELATSVLEKMAAKGKPGSTSKGM ITFPM 
Sbjct: 181 FPDYFKVVGHQNFASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMN 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY +ATHLPP+SDESDKWSVAILHEFLHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII
Sbjct: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360

Query: 361 RNKYLHLMNTVKEDSKTT-SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS--------- 420
           RNKYLHLMNTVKEDSKTT SEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS         
Sbjct: 361 RNKYLHLMNTVKEDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSANEDEDED 420

Query: 421 DDEDEDEEEDQGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKR 480
           +DEDEDE+ED+GE E+ASSN NIQADRKEDGR+KRHVDLKEN+VRDRMRSSKR+N SAKR
Sbjct: 421 EDEDEDEDEDEGEGEDASSNHNIQADRKEDGRSKRHVDLKENAVRDRMRSSKRKNSSAKR 480

Query: 481 PSRDRDAKRERSNMSKRSSVRTKV 495
           PSRDRDAKRERSNMSKR SVRTKV
Sbjct: 481 PSRDRDAKRERSNMSKRYSVRTKV 504

[Close]

BLAST of CmoCh19G011080 vs. TAIR 10
Match: AT1G71850.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 438.3 bits (1126), Expect = 7.9e-123
Identity = 232/443 (52.37%), Postives = 318/443 (71.78%), Query Frame = 0


Query: 30  VDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPTRPI 89
           V+ T K+VRDRGLDHAVEREKNL P+++IK+ I+SEP+KSVP+S+IT +++ LR+P RPI
Sbjct: 25  VEDTYKFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPI 84

Query: 90  DLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLVKLLML 149
           + IR +P++F+EFLPGGIGI PH+ LT ++L  DA+EQL Y SE  +Q  ADRL+KLLM+
Sbjct: 85  EFIRSFPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMI 144

Query: 150 SRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELVCWN 209
           +R++KIPL I+D LKW+LGLPKDYV+++VPEFPDYF+V+     +   G    LELVCW+
Sbjct: 145 NRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIK----SKLRGCSGELELVCWS 204

Query: 210 NELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYISPYIN 269
           NE A SVLEK A   + G  +KG  I FPMK+SNGF +DKK KKW+D+WQKLPYISPY N
Sbjct: 205 NEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYEN 264

Query: 270 ATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHHPGIF 329
           A HL   SDESDKW+ A+LHE +++ V+KK EK+ +L +GE+ GLRSRFKR L +HPGIF
Sbjct: 265 ALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIF 324

Query: 330 YLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQQKQ 389
           YLSSK  T+TVVL++ YKRG +IES+ L+  RN+Y+ LMNTVK+D+K  S       + +
Sbjct: 325 YLSSKLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLMNTVKKDNKAVSSSSKKEDKGK 384

Query: 390 EQKEGSDDGSGKQNEAELFNSDDEDE---DEEEDQGEDENASSNQNIQADRKEDGRNKRH 449
            + E  D  +  +N+ ++  SD ED+   D  +D  +D+    NQ+++  R+        
Sbjct: 385 VEGEVCDTDAKAEND-DISGSDVEDDRQGDFVDDDEDDDEVDQNQDLERGRRNSSPRSGR 444

Query: 450 VDLKENSVRDRMRSSKRRNLSAK 470
                +  RD+ + S+R  +S K
Sbjct: 445 RSFGNSGSRDKAQ-SRRSKISLK 461

[Close]

BLAST of CmoCh19G011080 vs. TAIR 10
Match: AT4G24320.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 290.8 bits (743), Expect = 2.0e-78
Identity = 151/365 (41.37%), Postives = 229/365 (62.74%), Query Frame = 0


Query: 27  RTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPT 86
           RT+V+  +KWV D  LD AV+REKNL  V+++K+ I S PSKS+P+S ++  + ++ +  
Sbjct: 16  RTFVNARVKWVSDHYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSLSLLKPLVNLHI 75

Query: 87  RPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLVKL 146
                 +KYP++F  F P       HVRLT Q L L  EE+  + S   R     RL K 
Sbjct: 76  TAAAFFQKYPSVFTTFQPSP-SHPLHVRLTPQALTLHKEEETIHLSPPQRNVTVQRLTKF 135

Query: 147 LMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELV 206
           LML+    +PL ++D+ +++LGLP+DY+ S++ ++P+YF+V   ++  +G  T+ AL + 
Sbjct: 136 LMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDRLTGEKTL-ALTIS 195

Query: 207 CWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYISP 266
              N L  S +E+  A        KG+ I + M +  G+E+ K+ K WV++WQ LPYISP
Sbjct: 196 SRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFPKGYELHKRVKNWVEQWQNLPYISP 255

Query: 267 YINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHHP 326
           Y NA HL   SD+++KW+VA+LHE L +LV+KKTE + V+ +GEY G   RFK+AL+HHP
Sbjct: 256 YENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVICLGEYLGFGMRFKKALVHHP 315

Query: 327 GIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQ 386
           GIFY+S K  T TVVL+EAY +  ++E  PLM IR++Y++LM+      K    H   R 
Sbjct: 316 GIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRHQYIYLMSKSGRGKKRDYVHGVERS 375

Query: 387 QKQEQ 392
            ++++
Sbjct: 376 NRKKR 378

[Close]

BLAST of CmoCh19G011080 vs. TAIR 10
Match: AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 217.6 bits (553), Expect = 2.2e-56
Identity = 139/402 (34.58%), Postives = 213/402 (52.99%), Query Frame = 0


Query: 14  KCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVS 73
           KCR++   F       V+  +KWV+DR LD  V REK+L  V N+ + I + P   +P+ 
Sbjct: 17  KCRERFDFFYQQRCGLVNVKLKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIF 76

Query: 74  IITQKREVLRIP--TRPIDLIRKYPTIFEEFL---PGGIGIQPHVRLTSQVLELDAEEQL 133
            +   R  L +P   +    IR+YP IF E       G  + P   LT + ++L  EE  
Sbjct: 77  KLLPHRGQLGLPQELKLSAFIRRYPNIFVEHCYWDSAGTSV-PCFGLTRETIDLYYEE-- 136

Query: 134 TYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVV 193
              S +  +    RL KLLML+    + L  ID L+W+LGLP DY  S++ + PD F +V
Sbjct: 137 VDVSRVNERDVLVRLCKLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLV 196

Query: 194 GHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMD 253
              +   G      L+L+ W+  LA S   +M  +   G+  +   + FP+K++ GF + 
Sbjct: 197 KLSSDLDG------LKLIHWDEHLAVS---QMQLREDVGNDER---MAFPVKFTRGFGLK 256

Query: 254 KKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGI 313
           +K  +W+ EWQ+LPY SPY++A+HL P +D S+K +V + HE LH+ + KKTE++ V  +
Sbjct: 257 RKSIEWLQEWQRLPYTSPYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNL 316

Query: 314 GEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLM 373
            + F L  +F +    HPGIFY+S K  T TV+L+EAY R  +IE  PL+ +R K+ ++M
Sbjct: 317 RKPFALPQKFTKVFERHPGIFYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANMM 376

Query: 374 NTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS 411
           N    D       KS     ++    +        E EL N+
Sbjct: 377 NEGFLDRSRGLYQKSVEADLEKNNIKTSYPVWSDEEEELDNN 403

[Close]

BLAST of CmoCh19G011080 vs. TAIR 10
Match: AT2G39120.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 212.2 bits (539), Expect = 9.3e-55
Identity = 126/344 (36.63%), Postives = 196/344 (56.98%), Query Frame = 0


Query: 27  RTYVDGTIKWVRDRGLDHA--VEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRI 86
           RTYVD  +KW RD   D+   + R   L  V+++KN I  EP++ +P+S I++K     +
Sbjct: 22  RTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDV 81

Query: 87  PTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLV 146
            T+    +RK+P+IFEEF+     + P  RLT +  ELD +E++ YQ+        DRL 
Sbjct: 82  STKIAHFLRKFPSIFEEFVGPEYNL-PWFRLTPEATELDRQERVVYQTS--ADDLRDRLK 141

Query: 147 KLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALE 206
           KL+++S+ + +PLSI+  +KW LGLP DY+Q     FPD   +     F      ++ L 
Sbjct: 142 KLILMSKDNVLPLSIVQGMKWYLGLPDDYLQ-----FPD-MNLDSSFRFVDMEDGVKGLA 201

Query: 207 LVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYI 266
           +     +   SVL+K A K + G  S    I FP+  S G  +  K + W+ E+QKLPY+
Sbjct: 202 VDYNGGDKVLSVLQKNAMKKRRGEVSL-EEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYV 261

Query: 267 SPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLH 326
           SPY + + L P+SD ++K  V  LHE L + V    E++ +L + ++FGL  +  +A   
Sbjct: 262 SPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFER 321

Query: 327 HPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLM 369
           HP IFYLS K  T T +L+E Y+  + +E+ P++ +R KY+ LM
Sbjct: 322 HPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLM 355

[Close]

BLAST of CmoCh19G011080 vs. TAIR 10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 201.1 bits (510), Expect = 2.1e-51
Identity = 125/394 (31.73%), Postives = 211/394 (53.55%), Query Frame = 0


Query: 34  IKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPTRPIDLIR 93
           +KWV+++ LDH ++ E +L     +K+ IK  P+  +    +   +++L +    +  +R
Sbjct: 33  LKWVKNKNLDHVIDTETDLKAACILKDAIKRSPTGFLTAKSVADWQKLLGLTVPVLRFLR 92

Query: 94  KYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLVKLLMLSRVH 153
           +YPT+F EF        P  +LT   L LD++E++ +QS        +RL ++LM+ R  
Sbjct: 93  RYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSH--EADTVERLCRVLMMMRSK 152

Query: 154 KIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELVCWNNELA 213
            + L  +  LK++LGLP +Y +++V ++PD+F  V   N          L+LV W +E A
Sbjct: 153 TVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASN------GNPCLKLVKWRDEFA 212

Query: 214 TSVLEK-------MAAKGKPGSTSKGM-PITFPMKYSNGFEMDKKFKKWVDEWQKLPYIS 273
            S L+K          + +     +G   +TFPM +  G+   KK K W+DE+QKLPYIS
Sbjct: 213 FSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPYIS 272

Query: 274 PYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHH 333
           PY + +++ P SD  +K +VA+LHE L + + KKT++  +  +     +  +F R    +
Sbjct: 273 PYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFTRY 332

Query: 334 PGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEHKSTR 393
           PGIFYLS K  T TV+LKE Y+RG +++  PL  +R+K+ H+M T            S  
Sbjct: 333 PGIFYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKFYHVMRTGFLYRARGLGMVSKE 392

Query: 394 QQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEE 420
           +   ++ E   +  G + E  +  S+ E++ E E
Sbjct: 393 ELLLDRPEDDLEEEGSEEEEIVEGSELEEDSEAE 418

The following BLAST results are available for this feature:

BLAST of CmoCh19G011080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUZ6	1.3e-53	36.63	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]
Q689D6	5.9e-30	27.58	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]
Q65XL5	1.7e-29	27.86	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
B6TTV8	6.1e-27	25.88	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
A0MFS5	8.8e-26	26.81	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CmoCh19G011080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKN4	2.6e-275	100.00	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC11145519...	[more]
A0A6J1HW55	1.2e-259	95.18	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1HXK3	5.9e-259	94.05	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1I0R6	5.0e-258	95.15	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X4 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1HZQ5	2.7e-256	91.86	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CmoCh19G011080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952527.1	5.5e-275	100.00	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata]	[more]
KAG7012049.1	3.3e-264	96.02	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_023554109.1	2.6e-261	94.07	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo] >XP_023554110.1...	[more]
XP_022969362.1	2.5e-259	95.18	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 [Cucurbita maxima]	[more]
XP_022969361.1	1.2e-258	94.05	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 [Cucurbita maxima]	[more]

BLAST of CmoCh19G011080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71850.1	7.9e-123	52.37	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G24320.1	2.0e-78	41.37	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	2.2e-56	34.58	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G39120.1	9.3e-55	36.63	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.1	2.1e-51	31.73	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 37..372 e-value: 1.3E-113 score: 379.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 435..487
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 408..425
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 373..400
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 373..494
None	No IPR available	PANTHER	PTHR31476:SF16	F14O23.23 PROTEIN	coord: 18..438
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 18..438

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G011080.1	CmoCh19G011080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding