CmoCh19G009960 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G009960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Wound-responsive family protein
Location	Cmo_Chr19: 8862365 .. 8862643 (+)
RNA-Seq Expression	CmoCh19G009960
Synteny	CmoCh19G009960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCGAGCGTGGCAGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGACAAGGTCGGAGACTTTTGTCTTCCGGGGAAAATCCGGCAGATCTCCGGCCTCTTTCCAGTTTAGTCGGATCGGAAGGTCCCGGAGCTGTCCGGAACTTAGACGCCGACGAGAGGATGGCACAAACGGAGGATTCTCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGATGA

mRNA sequence

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCGAGCGTGGCAGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGACAAGGTCGGAGACTTTTGTCTTCCGGGGAAAATCCGGCAGATCTCCGGCCTCTTTCCAGTTTAGTCGGATCGGAAGGTCCCGGAGCTGTCCGGAACTTAGACGCCGACGAGAGGATGGCACAAACGGAGGATTCTCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGATGA

Coding sequence (CDS)

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCGAGCGTGGCAGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGACAAGGTCGGAGACTTTTGTCTTCCGGGGAAAATCCGGCAGATCTCCGGCCTCTTTCCAGTTTAGTCGGATCGGAAGGTCCCGGAGCTGTCCGGAACTTAGACGCCGACGAGAGGATGGCACAAACGGAGGATTCTCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGATGA

Protein sequence

MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEGPGAVRNLDADERMAQTEDSLRRVMYLNCWGQG

Homology

[Close]

BLAST of CmoCh19G009960 vs. ExPASy TrEMBL
Match: A0A5A7SLJ2 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003700 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
           G+VR+ D DER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. ExPASy TrEMBL
Match: A0A0A0K6Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
           G+VR+ D DER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. ExPASy TrEMBL
Match: A0A2N9HZV9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.9e-24
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA VAV QG T+ GHKWKSG+KS++  ++ L SG + +DLRPLS ++GS+ 
Sbjct: 1  MSYLNRVWMAAGVAVVQGKTDQGHKWKSGIKSVQLRKQKLFSGNDTSDLRPLSGMIGSDF 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
           G + N DADER    ++SLRRVMYLNCWGQG
Sbjct: 61 QGFLGNSDADERPMHADESLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. ExPASy TrEMBL
Match: A0A5N6RB28 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.3e-23
Identity = 58/92 (63.04%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNR+ MAASVAV QGHT+ G K K GLKSL+ G+R   SG + ADLRP+S ++G + 
Sbjct: 1  MSYLNRIWMAASVAVVQGHTDQGRKVKPGLKSLQLGKRKFFSGSDSADLRPISGMIGLDF 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
           G + + DADER  Q E+SLRRVMYLNCWGQG
Sbjct: 61 AGFLGSSDADERPRQAEESLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. ExPASy TrEMBL
Match: A0A6A1VB48 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSY+NRV MAASVAV QGH + G K KSG+ SL+ GRR   SG + +D+RPLS ++GS+ 
Sbjct: 1  MSYINRVWMAASVAVVQGHRDQGCKLKSGVDSLQHGRRKFFSGNDSSDIRPLSGMMGSDL 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
           G + N D+DER  Q ++SLRRVMYLNCWGQG
Sbjct: 61 DGFLGNTDSDERRRQADESLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. NCBI nr
Match: KAG6572339.1 (hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.6 bits (475), Expect = 4.9e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
          PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG
Sbjct: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. NCBI nr
Match: KAG7011951.1 (hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
          PGAVR+LDADERMAQTEDSLRRVMYLNCWGQG
Sbjct: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. NCBI nr
Match: KAE8645762.1 (hypothetical protein Csa_020269 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
           G+VR+ D DER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. NCBI nr
Match: KAA0031600.1 (wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
           G+VR+ D DER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. NCBI nr
Match: KAG6589197.1 (hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022897.1 hypothetical protein SDJN02_16633, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKS RQGR+LLSSGENPADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
          P AV++ DA ER+AQ+E+SLRRVMYLNCWGQG
Sbjct: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 92

[Close]

BLAST of CmoCh19G009960 vs. TAIR 10
Match: AT4G28240.1 (Wound-responsive family protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSS--LVGS 60
          MSYLN+V MAAS    QG+ + G K KSGL S  + +R LSS     DLRPL++  L G 
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSS-----DLRPLAAADLTGD 60

Query: 61 EGPGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 93
            P   R   +    +  ++SLR+VMYLNCW QG
Sbjct: 61 SLPSEERRRTSS---STPDESLRQVMYLNCWAQG 86

The following BLAST results are available for this feature:

BLAST of CmoCh19G009960 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G009960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLJ2	1.3e-39	91.30	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K6Z3	1.3e-39	91.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1	[more]
A0A2N9HZV9	7.9e-24	61.96	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1	[more]
A0A5N6RB28	2.3e-23	63.04	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1	[more]
A0A6A1VB48	1.5e-22	60.87	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1	[more]

BLAST of CmoCh19G009960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572339.1	4.9e-44	100.00	hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011951.1	1.9e-43	98.91	hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8645762.1	2.8e-39	91.30	hypothetical protein Csa_020269 [Cucumis sativus]	[more]
KAA0031600.1	2.8e-39	91.30	wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-res...	[more]
KAG6589197.1	1.8e-38	89.13	hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh19G009960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28240.1	1.4e-12	46.81	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 9..91 e-value: 1.8E-16 score: 60.9
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..64
None	No IPR available	PANTHER	PTHR33090:SF38	DUF3774 DOMAIN PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G009960.1	CmoCh19G009960.1	mRNA