CmoCh19G009310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G009310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr19: 8606279 .. 8606497 (-)
RNA-Seq Expression	CmoCh19G009310
Synteny	CmoCh19G009310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCATTTCCACCTCAGTCTCGTTCTCGCCATTTTCCTTCTTCTCACTCCGACCACCACCGCCACCGCCGCCTCCGCCGCCGCCCAGCCAAGGATTCTGATGAGAAAACAAGTGGTTTTCCGGCCGCCGTCACCGTCACCATACAAATTCACAAACTATGAAGAACAAAAGCGAAGAGTCCCAACAGGATCAAACCCTTTACACAACAAACGGTGA

mRNA sequence

ATGACTCATTTCCACCTCAGTCTCGTTCTCGCCATTTTCCTTCTTCTCACTCCGACCACCACCGCCACCGCCGCCTCCGCCGCCGCCCAGCCAAGGATTCTGATGAGAAAACAAGTGGTTTTCCGGCCGCCGTCACCGTCACCATACAAATTCACAAACTATGAAGAACAAAAGCGAAGAGTCCCAACAGGATCAAACCCTTTACACAACAAACGGTGA

Coding sequence (CDS)

ATGACTCATTTCCACCTCAGTCTCGTTCTCGCCATTTTCCTTCTTCTCACTCCGACCACCACCGCCACCGCCGCCTCCGCCGCCGCCCAGCCAAGGATTCTGATGAGAAAACAAGTGGTTTTCCGGCCGCCGTCACCGTCACCATACAAATTCACAAACTATGAAGAACAAAAGCGAAGAGTCCCAACAGGATCAAACCCTTTACACAACAAACGGTGA

Protein sequence

MTHFHLSLVLAIFLLLTPTTTATAASAAAQPRILMRKQVVFRPPSPSPYKFTNYEEQKRRVPTGSNPLHNKR

Homology

[Close]

BLAST of CmoCh19G009310 vs. NCBI nr
Match: KAG6572280.1 (hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 1.6e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MTHFHLSLVLAIFLLLTPTTTATAASAAAQPRILMRKQVVFRPPSPSPYKFTNYEEQKRR 60
          MTHFHLSLVLAIFLLLTPTTTATAASAAAQPRILMRKQVVFRPPSPSPYKFTNYEEQKRR
Sbjct: 1  MTHFHLSLVLAIFLLLTPTTTATAASAAAQPRILMRKQVVFRPPSPSPYKFTNYEEQKRR 60

Query: 61 VPTGSNPLHNKR 73
          VPTGSNPLHNKR
Sbjct: 61 VPTGSNPLHNKR 72

[Close]

BLAST of CmoCh19G009310 vs. NCBI nr
Match: KAG6589151.1 (hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 4.3e-11
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MTHFHLSLVLAI-FLLLTPTTTATAASAAAQPRILMRKQVVFRPPSPSPYKFTNYEEQKR 60
          MTHFHL L+L I  LLLTPTT AT ASAA +PRI +RKQV+FRP SPS  K  ++E+QKR
Sbjct: 1  MTHFHLRLLLPILLLLLTPTTAATVASAAVRPRISLRKQVIFRPSSPSTTKPIDFEDQKR 60

Query: 61 RVPT 64
          RVPT
Sbjct: 61 RVPT 64

The following BLAST results are available for this feature:

BLAST of CmoCh19G009310 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G009310 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G009310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572280.1	1.6e-29	100.00	hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6589151.1	4.3e-11	68.75	hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh19G009310 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G009310.1	CmoCh19G009310.1	mRNA