CmoCh19G009280 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G009280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Macrodontain-1
Location	Cmo_Chr19: 8591959 .. 8592948 (+)
RNA-Seq Expression	CmoCh19G009280
Synteny	CmoCh19G009280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGCAGCTCTCCCACATTTGGTTCGTTCATCAATTTCACCCACTTGCCTACCGAGTTACACCATCTCAACCTTCTCCTTATATCCACACAAGGTTTGTCTAAATTATACTACTCATTAATTTTGAAAAATCTCAAACTCTGGTTATCTCCCAACATCTATTAATTTTTCTAATCAATTCTATTTCAACTTTCAACTTAAGAGAAAAGATAGTATACAAAAAAAATGCAGACAGTAGAAAATATAGTATGCCAAAGTATGTAGACGGGACAGAAGATAGTATGCCAAAGTATGTAGACCTGAGAAAAGGAGATGTGACCTCAATAAAAAATCAATGTCACTCAGGTTGTTTTATTCTTATTAAGTTACCATAATAATAATAATATTTTTATTTTTATTCTTGTGCCGCCTCCTGTTGGATATATACTGGTATTGCTGCCATTCAATCCGTCTACAAAATAAAAAAAGTACAATTCATAGATCTCTCTACCAAGCAACTCATCCATCACTTTTAGCTACATCTGAATAGTGATGAAGGCGGCGATCCTGATATTGTGTTTCAATATGTAATGAAAACGCCAATATTTAGACAAAGTGATTATGGTAACAGGATAGTTAAAAGAGACCAGGTAAATATTTACTTCATTTAAATTGGTTTTAAATTTTTATTGTCATTGTTGATTTAAACTAACCCATGTCAATCTAATGTAATGTAGACTCTTCAAATACGAAGATTCCAATACTTGAGATTCGAAGAAGAACTAGACTTAATCATGGCTCTATACAGTGGACCTGTTTGCATCTTGATTGCTTCTAGTCACCACAACTTTGAAAGATACAGGGAGGTAAGATTCATTTTGTTATATTAATCAAAATTTATATATATACTTTTTATCTTTTAACATAGAATATTATTATCTACATTCAGGGTATATACCACGGTCCATTTGGATGGCAGTTGGATATACTCCTGACTATATTATCATAA

mRNA sequence

ATGACAGCAGCTCTCCCACATTTGGTTCGTTCATCAATTTCACCCACTTGCCTACCGAGTTACACCATCTCAACCTTCTCCTTATATCCACACAAGCTACATCTGAATAGTGATGAAGGCGGCGATCCTGATATTGTGTTTCAATATGTAATGAAAACGCCAATATTTAGACAAAGTGATTATGGTAACAGGATAGTTAAAAGAGACCAGACTCTTCAAATACGAAGATTCCAATACTTGAGATTCGAAGAAGAACTAGACTTAATCATGGCTCTATACAGTGGACCTGTTTGCATCTTGATTGCTTCTAGTCACCACAACTTTGAAAGATACAGGGAGGGTATATACCACGGTCCATTTGGATGGCAGTTGGATATACTCCTGACTATATTATCATAA

Coding sequence (CDS)

ATGACAGCAGCTCTCCCACATTTGGTTCGTTCATCAATTTCACCCACTTGCCTACCGAGTTACACCATCTCAACCTTCTCCTTATATCCACACAAGCTACATCTGAATAGTGATGAAGGCGGCGATCCTGATATTGTGTTTCAATATGTAATGAAAACGCCAATATTTAGACAAAGTGATTATGGTAACAGGATAGTTAAAAGAGACCAGACTCTTCAAATACGAAGATTCCAATACTTGAGATTCGAAGAAGAACTAGACTTAATCATGGCTCTATACAGTGGACCTGTTTGCATCTTGATTGCTTCTAGTCACCACAACTTTGAAAGATACAGGGAGGGTATATACCACGGTCCATTTGGATGGCAGTTGGATATACTCCTGACTATATTATCATAA

Protein sequence

MTAALPHLVRSSISPTCLPSYTISTFSLYPHKLHLNSDEGGDPDIVFQYVMKTPIFRQSDYGNRIVKRDQTLQIRRFQYLRFEEELDLIMALYSGPVCILIASSHHNFERYREGIYHGPFGWQLDILLTILS

Homology

[Close]

BLAST of CmoCh19G009280 vs. ExPASy Swiss-Prot
Match: P83443 (Macrodontain-1 OS=Ananas macrodontes OX=203992 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.5e-04
Identity = 20/58 (34.48%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 74  IRRFQYLRFEEELDLIMALYSGPVCILIASSHHNFERYREGIYHGPFGWQLDILLTIL 132
           I  + Y+R  +E  ++ A+ + P+  LI +S  NF+ Y+ G+Y GP G+ L+  +TI+
Sbjct: 107 ITGYSYVRRNDESHMMYAVSNQPIAALIDASGDNFQYYKGGVYSGPCGFSLNHAITII 164

[Close]

BLAST of CmoCh19G009280 vs. ExPASy Swiss-Prot
Match: P84346 (Mexicain OS=Jacaratia mexicana OX=309130 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.4e-04
Identity = 26/99 (26.26%), Postives = 45/99 (45.45%), Query Frame = 0


Query: 39  EGGDPDIVFQYVMKTPIFRQSDYG--------NRIVKRDQTLQIRRFQYLRFEEELDLIM 98
           +GG      QYV+   +  + +Y             K+   + I  ++Y+   +E+ LI 
Sbjct: 64  DGGYQTPSLQYVVDNGVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQ 123

Query: 99  ALYSGPVCILIASSHHNFERYREGIYHGPFGWQLDILLT 130
           A+ + PV ++  S    F+ Y+ GIY GP G   D  +T
Sbjct: 124 AIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVT 162

[Close]

BLAST of CmoCh19G009280 vs. NCBI nr
Match: KAG6572278.1 (Cysteine protease XCP2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-40
Identity = 102/209 (48.80%), Postives = 109/209 (52.15%), Query Frame = 0


Query: 1   MTAALPHLVRSSISPTCLPSYTISTFSLYPHK---------------------------- 60
           MTA L HLVRSSIS T LPSYTISTFS YP K                            
Sbjct: 1   MTATLRHLVRSSISHTYLPSYTISTFSSYPPKKKDSMSKNADWTKYKMPKYVEWTEDSIP 60

Query: 61  --------------------------------------------------------LHLN 120
                                                                   LHLN
Sbjct: 61  KYVNWRKEGAVTSVKKQWHPASCWIYTGIAAIESAYKIKKGQLIDLSTNQLIHHFRLHLN 120

Query: 121 SDEGGDPDIVFQYVMKTPIFRQSDYGNRIVKRDQTLQIRRFQYLRFEEELDLIMALYSGP 126
           S EGGD D+VFQY MKTPI RQSDYG R+VKRDQT+QIRRFQYLR EEELDLIMAL +GP
Sbjct: 121 SGEGGDVDLVFQYAMKTPILRQSDYGKRVVKRDQTVQIRRFQYLRLEEELDLIMALRNGP 180

The following BLAST results are available for this feature:

BLAST of CmoCh19G009280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P83443	2.5e-04	34.48	Macrodontain-1 OS=Ananas macrodontes OX=203992 PE=1 SV=1	[more]
P84346	7.4e-04	26.26	Mexicain OS=Jacaratia mexicana OX=309130 PE=1 SV=1	[more]

BLAST of CmoCh19G009280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G009280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572278.1	2.8e-40	48.80	Cysteine protease XCP2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh19G009280 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000668	Peptidase C1A, papain C-terminal	PFAM	PF00112	Peptidase_C1	coord: 39..118 e-value: 7.1E-5 score: 23.0
None	No IPR available	GENE3D	3.90.70.10	Cysteine proteinases	coord: 12..131 e-value: 1.3E-7 score: 33.4
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 28..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G009280.1	CmoCh19G009280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity