CmoCh19G008240 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G008240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S11-like
LocationCmo_Chr19: 8115835 .. 8117965 (+)
RNA-Seq ExpressionCmoCh19G008240
SyntenyCmoCh19G008240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGCAGGTTTCTATTGAATTGGCGACATTCATTTCCCTTTTCATTTCAGTGACTTTAACATCTCTGTACTCTTTATCTTTTTTCCGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGGTTTTTCTCTGGTAAACGAATTGAAATTTTTGTTTTTTGTTCAGTTTTTGAATGACATGTGTTTGTGTTCTTATTTTTTGAATTGTTGTTTTGTTTTGCCGTTATCCCGATTTGATTTTGTTTTTATGATTTGTGTTGTTCTAATTATTATTCTCTTTCGTTTTTTCAAAATAGCTCTAAAAAGAGTGGGAAGGGGAAGAGACCTGGAAAGGGCGGAAACCGTTTTTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGTTCTGTTTTTCACAACTCTGATCACCTTATGTTTGTTGGCTTGCTCATATGAATGTTTTTAGTCCATCTGTGTTTTGACTTTGCTCGAGTACCATAAACTGGAAGCCAGACTCATTGTTTGCTCTGAACCATCCCGTTGTACTTTTATCCACAATAAAAAAACCTTGTACTTCGATCATTTTTAACCTTGTATAGTGCTTCATTGATTGTATTCTCTATTGAATTGCCATTTGTTCGAATGCTGAGAGGATACAACTCTGATGCAAAAATATATTGAAAAAACGTAATGAGCTGAAGGGATAGTTGTGTTGAGGATTTTATTATCTTTTGTCTAGAATAGGTGTATGTTTCTTCCTTTATACAACAGTATCTACTAGATGGATGGTTGAGGGAGTCCAAAATATTAAGGAATTTTGTTGATGGAATGATGTCAAACTTAGTACTCTCCAATCAATTATTTATGATCAAGAAAAATTGCCACAGCATTGCGTTTATCGTGAGATTCATGATTGAATATTAGAAGGCTAATGCCGTATTCCCATTCTAGGCTGGGCATCCTCACTTACCCTATGTACTGTATTCATTCTTATTAAGGCCCAATATTTAGGCGTATCTTGCTCTCATGTTCTGTGAATTGTTGCTGCAAATAAGAATTCATCCCGTGAAGGGGAATTTCTTTGCAATATTGCATCCTTATTTACCCTATGTATTGTATGCATCCTTATCTCTAAGTTTTTAAGACCCTATTTAGGCATATCTTGCTATTATGTTCTTTTGAATTGTTGCTGAATATGAGAATGCTATTTACTTACTTATTATTCCAATTCTATTACATTCATGCAGGAACATATATCGATAAGAAATGCCCCTTTACCGGAACGGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTACGTTAAGAAGTATCAGAGGTGCTTCACTGAACTCCACCCTACCCACACACAGTCAGCACCACCGCCACCGCCACCGCCATCTGATTTTTATTTTCGTGGTTTTGACATATTGTGTTTCTTCTTTCTCCTTCAGGTATGAGAAAAGGCACTCCAACATTCCAGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATCGGCCAATGCAGGTACATTAAGATACGAAAAATTCTTTCCATTGATTGCTGTTATTATATCTATTGTTTTGTGTTTTTTTCCAAGACATGTTTCACATTTACCGTGTTTGAATGAATTTCAGGCCATTGTCGAAGACAGTTAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTAGTGGGAAGAAGGCTTTTGCGGGGATATAAATAACGCAGGCTTCCTCTTTTGATCCAAAAACAGCAACTGTTTAGAGTTGTAAGCCATATTTAATTCAACAGAGTTTTGAAGACTTAATAGTCTGAATTTTGATTTGAGTATGGACTGTTTTATTGTGTTCTATTTGTTTCGGTTTCTGGCAAATTTAGGGGGGTAATCTCAAGGATTAATGTTATATTGTTCATGTTTCAATTGAAAACGCCCCTTGATTGATGAATTATTATTGATTAAAAGAGTTAAGCGGCTTCTTAGTTCATTGAAAAGGTCCTGTAAGGGTCGGTCTTGATTTGGATAATGGATCTAGCTTTTTGTACATTAACTTATCC

mRNA sequence

ATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGGTTTTTCTCTGCTCTAAAAAGAGTGGGAAGGGGAAGAGACCTGGAAAGGGCGGAAACCGTTTTTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGAACATATATCGATAAGAAATGCCCCTTTACCGGAACGGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTACGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCAGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATCGGCCAATGCAGGCCATTGTCGAAGACAGTTAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTAGTGGGAAGAAGGCTTTTGCGGGGATATAAATAACGCAGGCTTCCTCTTTTGATCCAAAAACAGCAACTGTTTAGAGTTGTAAGCCATATTTAATTCAACAGAGTTTTGAAGACTTAATAGTCTGAATTTTGATTTGAGTATGGACTGTTTTATTGTGTTCTATTTGTTTCGGTTTCTGGCAAATTTAGGGGGGTAATCTCAAGGATTAATGTTATATTGTTCATGTTTCAATTGAAAACGCCCCTTGATTGATGAATTATTATTGATTAAAAGAGTTAAGCGGCTTCTTAGTTCATTGAAAAGGTCCTGTAAGGGTCGGTCTTGATTTGGATAATGGATCTAGCTTTTTGTACATTAACTTATCC

Coding sequence (CDS)

ATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAGGTTTTTCTCTGCTCTAAAAAGAGTGGGAAGGGGAAGAGACCTGGAAAGGGCGGAAACCGTTTTTGGAAGAGTATTGGATTAGGATTCAAGACGCCAAGGGAAGCCGTTGAAGGAACATATATCGATAAGAAATGCCCCTTTACCGGAACGGTCTCTATCAGGGGACGTATTTTAGCTGGAACTTGTCATAGTGCTAAAATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTACGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCAGCCCACATATCTCCTTGCTTTCGTGTGAAGGAGGGAGATCACGTTATTATCGGCCAATGCAGGCCATTGTCGAAGACAGTTAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAAGTAGTGGGAAGAAGGCTTTTGCGGGGATATAA

Protein sequence

MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI
Homology
[Close]
BLAST of CmoCh19G008240 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.6e-82
Identity = 146/156 (93.59%), Postives = 154/156 (98.72%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGK+PGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAF 157
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS+++GKKAF
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAF 156

[Close]
BLAST of CmoCh19G008240 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 146/159 (91.82%), Postives = 152/159 (95.60%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK+GKGKRPGKGGNRFWKSIGLGFKTPREA++GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS   KKAF  I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]
BLAST of CmoCh19G008240 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.4e-81
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGKRPGKGGNRFWK+IGLGFKTPREA++G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSS-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSSS GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of CmoCh19G008240 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 302.4 bits (773), Expect = 3.1e-81
Identity = 146/159 (91.82%), Postives = 152/159 (95.60%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL +KK+GKGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHISP FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS  KKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]
BLAST of CmoCh19G008240 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 301.2 bits (770), Expect = 6.9e-81
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK SGKGKRPGKGGNRFWK+IGLGFKTPREA++G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of CmoCh19G008240 vs. ExPASy TrEMBL
Match: A0A6J1HZI1 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]
BLAST of CmoCh19G008240 vs. ExPASy TrEMBL
Match: A0A6J1GJT3 (40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]
BLAST of CmoCh19G008240 vs. ExPASy TrEMBL
Match: A0A2P5DDD1 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_074430 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 5.8e-83
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKS KGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSSKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of CmoCh19G008240 vs. ExPASy TrEMBL
Match: A0A6J0ZML1 (40S ribosomal protein S11 OS=Herrania umbratica OX=108875 GN=LOC110410631 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 5.8e-83
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGL FKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLSFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM+RTIIVRRNYLHY+KKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMMRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of CmoCh19G008240 vs. ExPASy TrEMBL
Match: A0A5D3DI18 (40S ribosomal protein S11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003300 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 5.8e-83
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+ KGKRPGKGGNRFWKSIGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKTAKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           F GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of CmoCh19G008240 vs. NCBI nr
Match: XP_022952178.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosomal protein S11-like [Cucurbita maxima] >KAG7011817.1 40S ribosomal protein S11-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.5 bits (833), Expect = 2.6e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]
BLAST of CmoCh19G008240 vs. NCBI nr
Match: KAG6572178.1 (Glutamate receptor 3.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325.5 bits (833), Expect = 2.6e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1    MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
            MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1522 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 1581

Query: 61   FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
            FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 1582 FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 1641

Query: 121  GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
            GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI
Sbjct: 1642 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 1680

[Close]
BLAST of CmoCh19G008240 vs. NCBI nr
Match: XP_023554629.1 (40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.4 bits (825), Expect = 2.2e-84
Identity = 157/159 (98.74%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFTGI 159

[Close]
BLAST of CmoCh19G008240 vs. NCBI nr
Match: XP_038887258.1 (40S ribosomal protein S11-like [Benincasa hispida])

HSP 1 Score: 320.9 bits (821), Expect = 6.4e-84
Identity = 155/159 (97.48%), Postives = 158/159 (99.37%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRFWKSIGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKAGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of CmoCh19G008240 vs. NCBI nr
Match: PON46140.1 (Ribosomal protein [Parasponia andersonii] >PON71303.1 Ribosomal protein [Parasponia andersonii] >PON89846.1 Ribosomal protein [Trema orientale])

HSP 1 Score: 316.6 bits (810), Expect = 1.2e-82
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKKS KGKRPGKGGNRFWKSIGLGFKTPREA+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSSKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS  GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]
BLAST of CmoCh19G008240 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-82
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGKRPGKGGNRFWK+IGLGFKTPREA++G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSS-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSSSS GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of CmoCh19G008240 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 301.2 bits (770), Expect = 4.9e-82
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK SGKGKRPGKGGNRFWK+IGLGFKTPREA++G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of CmoCh19G008240 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-81
Identity = 144/159 (90.57%), Postives = 153/159 (96.23%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKKSGKGKRPGKGGNRFWK+IGLGFKTPREA+EGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 160
           GD V IGQCRPLSKTVRFNVLKVIPAGSSS GKKAF G+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

The following BLAST results are available for this feature:
BLAST of CmoCh19G008240 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P254603.6e-8293.5940S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1[more]
Q9M5M11.1e-8191.8240S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1[more]
P161812.4e-8191.2540S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1[more]
P170933.1e-8191.8240S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2[more]
P427336.9e-8190.5740S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2[more]
BLAST of CmoCh19G008240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HZI11.3e-85100.0040S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 ... [more]
A0A6J1GJT31.3e-85100.0040S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=... [more]
A0A2P5DDD15.8e-8396.23Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_074430 PE=3 SV=... [more]
A0A6J0ZML15.8e-8395.6040S ribosomal protein S11 OS=Herrania umbratica OX=108875 GN=LOC110410631 PE=3 S... [more]
A0A5D3DI185.8e-8396.2340S ribosomal protein S11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
BLAST of CmoCh19G008240 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952178.12.6e-85100.0040S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosoma... [more]
KAG6572178.12.6e-85100.00Glutamate receptor 3.2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023554629.12.2e-8498.7440S ribosomal protein S11-like [Cucurbita pepo subsp. pepo][more]
XP_038887258.16.4e-8497.4840S ribosomal protein S11-like [Benincasa hispida][more]
PON46140.11.2e-8296.23Ribosomal protein [Parasponia andersonii] >PON71303.1 Ribosomal protein [Paraspo... [more]
BLAST of CmoCh19G008240 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G48930.11.7e-8291.25Nucleic acid-binding, OB-fold-like protein [more]
AT5G23740.14.9e-8290.57ribosomal protein S11-beta [more]
AT4G30800.11.4e-8190.57Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 131..138
score: 73.25
coord: 121..131
score: 60.91
coord: 88..111
score: 37.33
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 74..142
e-value: 7.1E-26
score: 90.1
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 1..159
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 4..72
e-value: 6.0E-31
score: 106.7
IPR028333Ribosomal protein S17, archaeal/eukaryoticTIGRFAMTIGR03630TIGR03630coord: 54..143
e-value: 6.4E-34
score: 114.0
NoneNo IPR availableGENE3D2.40.50.1000coord: 1..158
e-value: 1.7E-83
score: 280.3
NoneNo IPR availablePANTHERPTHR10744:SF2440S RIBOSOMAL PROTEIN S11-1-RELATEDcoord: 1..159
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 121..133
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 68..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G008240.1CmoCh19G008240.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome