CmoCh19G008150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G008150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr19: 8050711 .. 8052992 (-)
RNA-Seq ExpressionCmoCh19G008150
SyntenyCmoCh19G008150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCTCCATATCATTTTCAGAGTAGTTGGACAAACTGCACAAACAGGAAGTTCAAGCAGACAATGGCCAGGTAGCTAGTACATTATTACTCGATTGAAATTACATAGAAGAAATTCTAGTGGACTCATGCAATAAAAGTTGTAAATATATATATATATATATGTATGTATGTATATGTATATGTATATGTATATATTGTTCATATTCAAACTACATTTTTCTGTTTAACCAGGCTATTCTCTTCTAAATCAAGGCATCAGTGGTACTGCAATCGATGTCTAGCATGGGACAAAGGCATCTCAATGGTGAAGGTAAACTTATTCAACTGATCATCACCAAAAAATTGGACAGTTTTATTAATTAATCAGCTCAAAATGATTATGTTTCAAGAAATTTTATAACATTAACAAACATTAAACGAGAAACTAGACTCTTGAATTATAGCGGTTATTTATTTATCATTAATTTTTTTAAATAGATTCCCTTCTTAGTTGATCTCAAACACTAAAATGGCTCTTTTCTTTTGAGGATCTCAACATATCTTCAGAGCAGTACGATGTTGTCTATTTTAGCCATAAACTCTTATGAATTTGCTTTTATACCATTAGTATTTTGCTTCTCCAGCCATGGTGAGACTTTATTTGCACTCCAAACATCAACATTAAGGGGGGAGAAGCTGACGTTGGAGTCGTTTTGTTGCAGCAATTTCTGCCTCAAACCGTTCGTTCTTCTATTTATGTAAGAGTTTTTCAATATCTCTCATTTTGATTTTAGCATGAACTAACTTATTTAGAGTTCAAATTTATGAACATCTAAGTATTTATGCCTTTGCTTAGTTCATATAGTATTTAGAAGAGTAAACGAAAAATGACTAATTAGTGTCTGAAAATTCTTCTAAATTCACGAGCTGTTCTTTATGAACTAAGTTCAACCTATTGAATTACCGGCCTCAACGATAACATATTTATATAATAGGGTAAGAAAAAAATAGTAAAAAATGTGTCTCAAACAAGGTTTAAAAGGTTGATATCGATTTTTTTTTAAAAAAAAGTAAAAATAAAAAATAAAGTTATAAATAAGCATTTTATATTATATTCATATTTAATAATATTTTATTGATTATTTTATCATAGTATTTTTTTTAATGTTTTTTTAATGATATATTGAACATGTCAATTTACCATTCATATCGATATCAAACTCATAAGCATAAAAATATGAAATGTTGAGAAAATTTAATCATTTCAGTTAAACGAGGTTTAAAAAAAAAAGAAGAAAGAAATATATATATATATATATATAGTTGATTTAATAAAATTTAAAATAAAAATAATATAACAATAATTATAAAATAAATAGAAACATTAGAACAGTGCATTCTATCAGTAGCAGTAAAAGTAGTCAACAAATTCTCTAATCTCTAATACTTTTGCCATCAAATATCTAGAAAGTATAAAAACTTAACATGTCAAGAGAGCTTTTTTTAAAAAAGAACATACACGTAACACGAGCGAAAAATACATAATACATGAATCAAAATTATGTTTATGCCAAGAATCCTAATAAAAACTTTAGTTTCTTCGAAGTGTTTGTGTTATAATTGTCTCCCAATAAAAACATTATGTTGGATTGGATTCTGCTGCTTGCTTATAAGTCACAATCGCTCTTTTTTTTTACAGCGGACTTGCTATTGTGCTACACTAACTTTTCAGCAACAAGTGAGTTAAGTTAATTCGTTTGCGCGTCGCCTACGACTAGGCAACGTATGCTCGAGCCTCTGACCCCGATTTAAGAAGAAGGTTTTAGAAAATAGAAGTAGAGAGATTTTCAAAGAGTTTGAAAGCAAGATTTAGAGGGCGATTGAAAATGGTATTATATAGCGTGCAAGCAAAGGTAACAACGACGACTTAGTAGTATATAACTATTCGGGTAGGGGATATGACTACTTTTACTTTCAGCTACAGCCATTGTCTTCCTAACTAGTAACTCCCTGTAATCTACTTTTTGTTGCATAATCTCAAAGTAGGTTTGATGCATATGAAGACTCGTGCTGGCTAAGCTTGATATCTCAAACAACATTTGTGAAAGCATCAAGGATTGCAGCACAGAAGCAATTAGGATCAGTCAGACATGGAGGTTGATGTTTTTCTTTGATAATTTCAACTGTTTCTCCATGGAATCTGTGACCCCATGTTTCCAGTTGCTCAGGAGTAGGACAACCAAATCACCTATCAACAAGGATAAATGGAGGAGTGGACTTGGAGATCCAAAGATCTAA

mRNA sequence

ATGTTGCCTCCATATCATTTTCAGAGTAGTTGGACAAACTGCACAAACAGGAAGTTCAAGCAGACAATGGCCAGGCTATTCTCTTCTAAATCAAGGCATCAGTGGTACTGCAATCGATGTCTAGCATGGGACAAAGGCATCTCAATGGTGAAGCCATGACTCGTGCTGGCTAAGCTTGATATCTCAAACAACATTTGTGAAAGCATCAAGGATTGCAGCACAGAAGCAATTAGGATCAGTCAGACATGGAGGTTGATGTTTTTCTTTGATAATTTCAACTGTTTCTCCATGGAATCTGTGACCCCATGTTTCCAGTTGCTCAGGAGTAGGACAACCAAATCACCTATCAACAAGGATAAATGGAGGAGTGGACTTGGAGATCCAAAGATCTAA

Coding sequence (CDS)

ATGTTGCCTCCATATCATTTTCAGAGTAGTTGGACAAACTGCACAAACAGGAAGTTCAAGCAGACAATGGCCAGGCTATTCTCTTCTAAATCAAGGCATCAGTGGTACTGCAATCGATGTCTAGCATGGGACAAAGGCATCTCAATGGTGAAGCCATGA

Protein sequence

MLPPYHFQSSWTNCTNRKFKQTMARLFSSKSRHQWYCNRCLAWDKGISMVKP
Homology
[Close]
BLAST of CmoCh19G008150 vs. NCBI nr
Match: KAG7011808.1 (hypothetical protein SDJN02_26714, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 9   SSWTNCTNRKFKQTMARLFSSKSRHQWYCNRCLAWDKGISMVK 52
           SSWTNCTNRKFKQTMARLFSSKSRHQWYCNRCLAWDKGISMVK
Sbjct: 81  SSWTNCTNRKFKQTMARLFSSKSRHQWYCNRCLAWDKGISMVK 123

[Close]
BLAST of CmoCh19G008150 vs. NCBI nr
Match: KAG6572170.1 (hypothetical protein SDJN03_28898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 23 MARLFSS-KSRHQWYCNRCLAWDKGISMVKP 53
          MARLFSS KSRHQ YCNRCLAWDKGISMVKP
Sbjct: 1  MARLFSSLKSRHQCYCNRCLAWDKGISMVKP 31

The following BLAST results are available for this feature:
BLAST of CmoCh19G008150 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh19G008150 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh19G008150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011808.11.3e-17100.00hypothetical protein SDJN02_26714, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6572170.12.3e-0693.55hypothetical protein SDJN03_28898, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh19G008150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G008150.1CmoCh19G008150.1mRNA