CmoCh19G007090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G007090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr19: 7449369 .. 7451230 (+)
RNA-Seq ExpressionCmoCh19G007090
SyntenyCmoCh19G007090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACGAAGCCACCCACCATTCCTTCACCACTTCCCTTTCTGTTCTCTCTTCTCCGACCGTGTCAATCACAAGAACAGCAATTTCTTCTTCATTCTGCAAATCGCCGTCCGATCGCCATTTTCTTCTCCATTTCCACTCGCCATTGCATCTGTAAGTATTCCGTTCTTCTATTTCCACTTCCTGATTCCTCTCCTGCTCAGTTGTTTTTCTCCGTTTTCAAGTTTCTCCTCCGAAACCCTAGCCTTCTGTCACTCCTACCTTACGAACATTCGTTTTTCTAGTTCATGTGCCTAGTTTTCTCCCATTGATGCCGTTACTTCATTTGATTTTCTTTCAGCTGTTAGGTTTTCTTCGTTCTCTTTCCATCAGGAGTTGATCGAGCTGCTTCCGCTGCTGTTTGATTCCGGTACGGTTTCTCTTCTTTCCTTTGAACAAACTTCCGTTTTGAACATTCGATACTGTTGTTTAACGACACATTAGGATTCGTATGACTTGTTTGATGTAAATTTTGCTGTCTTTGTGAGTTTACTGCGAAGCAAATGGCGATAAATACTGATGTGCGAGTGTTCGTGTCAATTTCATTACACTATACGCACTTTTTTTTTGGTGGATTTTTAAGCAGAAGCTGAGTGAGTAACGTATGACACTATTTCCAGTTTAGCTTGTGTTGTAAGTCTTATGCTCAGAGCTCTGATGAAATTGTTTGTACGTATCGTTATACATGTATTTGTAAAGATATAATTGAATGTTCTTCTCATATTTCATATTTTAATTTTGTTCCTTATTTGGAAAACCATGCCATTGTAGGCTTTTGTTTTGCGCTGAAATGTTTAAATTGAGCCCCCATGGAATGCCAGATGTGAGCATGCTGTAACTTCCTGTTATCCAGAACTTATGATCCTAAAATTGTCAATGTAAAGAGAGTATCGTTTTTAATTATTTCAGTTGATGTAGCTTAACGAATTCATCGTGGTGTGGGACGAGTCCGATCTTCTTTATGTGTTTACAGTAGTTTTATCATTTGTCTGCACATTGTCCAAACTATAGTCTCCCTTTGGTATGGGTTTATCTGCCAGATCCCCACGTCGGTTGGAGAGGGGAACGAAGCATTCCTTATGAGGGTGTGGAAACCTCTCCCTAGCAGGCGTGTTTTATAACCGTGAGTCTGACGGCGATACGTAACGGGCCAAAGAAGACAGTATTTGCTAGTAGTGGGCTTGGGCCGTTACAAATGGTATCAGAGCCAAACTCCAGGCAGTGTGCTAGCAAGAACGCTAGGCCCCCAAGGGGGTGGATTGTGAGATCCCACATTTGTTGGAGAGGGGAACGAAGCATTCCTTACAAAGGTGCAGAAACCTCTCCCTAGCAGGCGCGTTTTATAACCGTGAAACTGACGGCGATACGTAACGGGCCATAATAGATAATATCTACTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGATCTAGACACCGAGCAGTGTGCCAGCGAGGACGCTAGGTCTCCAAGAGGGTGGATTGTGAGATCCCACATCTGTTGGAGAGGGGAATGAAGCATTTATTATAAGGGTGTGGAAACCTCTCTCTATCATACACGTTTTAAAACTATGAGGCGGATGGCGATACGTAACAGGCCAAAGCGGACAATATCTGCTAGCAGTGGGCTTAAGCGGTTACATTATTAGTATAGGTTTAATTTTTCTTTAAAAGGTTTGTGACTTTACCTATAAAAGAAAATGTTTGTGACGTCGATTTACTACTCGTTCTTAGTTGTTGAGGTTTCATTTCACTTAGTTTCGATCTTCCTGTTGTCTGATTCGTGCTGATGCGATCAATTTATGTTTAAATCAGAATAG

mRNA sequence

ATGAGAACGAAGCCACCCACCATTCCTTCACCACTTCCCTTTCTGTTCTCTCTTCTCCGACCGTGTCAATCACAAGAACAGCAATTTCTTCTTCATTCTGCAAATCGCCGTCCGATCGCCATTTTCTTCTCCATTTCCACTCGCCATTGCATCTCTGTTAGGTTTTCTTCGTTCTCTTTCCATCAGGAGTTGATCGAGCTGCTTCCGCTGCTGTTTGATTCCGAATAG

Coding sequence (CDS)

ATGAGAACGAAGCCACCCACCATTCCTTCACCACTTCCCTTTCTGTTCTCTCTTCTCCGACCGTGTCAATCACAAGAACAGCAATTTCTTCTTCATTCTGCAAATCGCCGTCCGATCGCCATTTTCTTCTCCATTTCCACTCGCCATTGCATCTCTGTTAGGTTTTCTTCGTTCTCTTTCCATCAGGAGTTGATCGAGCTGCTTCCGCTGCTGTTTGATTCCGAATAG

Protein sequence

MRTKPPTIPSPLPFLFSLLRPCQSQEQQFLLHSANRRPIAIFFSISTRHCISVRFSSFSFHQELIELLPLLFDSE
Homology
[Close]
BLAST of CmoCh19G007090 vs. NCBI nr
Match: KAG6572072.1 (hypothetical protein SDJN03_28800, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 4.6e-32
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MRTKPPTIPSPLPFLFSLLRPCQSQEQQFLLHSANRRPIAIFFSISTRHCISVRFSSFSF 60
          MRTKPPTIPSPLPFLFSLLR CQSQEQQFLLHSANRRPIAIFFSISTRHCISVRFSSFSF
Sbjct: 1  MRTKPPTIPSPLPFLFSLLRLCQSQEQQFLLHSANRRPIAIFFSISTRHCISVRFSSFSF 60

Query: 61 HQELIELLPLLFDSE 76
          HQELIELLPLLFDSE
Sbjct: 61 HQELIELLPLLFDSE 75

[Close]
BLAST of CmoCh19G007090 vs. NCBI nr
Match: KAG7011739.1 (hypothetical protein SDJN02_26645, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 70/89 (78.65%), Postives = 71/89 (79.78%), Query Frame = 0 

Query: 1  MRTKPPTIPSPLPFLFSLLRPCQSQEQQFLLHSANRRPIAIFFSISTRHCI--------- 60
          MRTKPPTIPSPLPFLFSLLR CQSQEQQFLLHSANRRPIAIFFSISTRHCI         
Sbjct: 1  MRTKPPTIPSPLPFLFSLLRLCQSQEQQFLLHSANRRPIAIFFSISTRHCICKYTALLFP 60

Query: 61 ------SVRFSSFSFHQELIELLPLLFDS 75
                +  FSSFSFHQELIELLPLLFDS
Sbjct: 61 LPDSFPAQLFSSFSFHQELIELLPLLFDS 89

The following BLAST results are available for this feature:
BLAST of CmoCh19G007090 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh19G007090 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh19G007090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572072.14.6e-3298.67hypothetical protein SDJN03_28800, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011739.11.3e-2678.65hypothetical protein SDJN02_26645, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh19G007090 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G007090.1CmoCh19G007090.1mRNA