CmoCh19G006850 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G006850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein RADIALIS-like 1
Location	Cmo_Chr19: 7259092 .. 7259328 (+)
RNA-Seq Expression	CmoCh19G006850
Synteny	CmoCh19G006850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCTGGTGAAGTTCCTTTCCCATATGGAAGGTCCAGATGA

mRNA sequence

ATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCTGGTGAAGTTCCTTTCCCATATGGAAGGTCCAGATGA

Coding sequence (CDS)

ATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCTGGTGAAGTTCCTTTCCCATATGGAAGGTCCAGATGA

Protein sequence

MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR

Homology

[Close]

BLAST of CmoCh19G006850 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.8e-24
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 2  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKD 61
          +SMS+  S+GSWTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LL++D
Sbjct: 4  SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKQIESGEVPFPYGRS 78
          +  IE+G VPFP  R+
Sbjct: 64 INSIENGHVPFPNYRT 78

[Close]

BLAST of CmoCh19G006850 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-23
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 3  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDV 62
          SMS++GS GSWT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LL++D+
Sbjct: 5  SMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KQIESGEVPFP 74
          + IE+G VPFP
Sbjct: 65 ESIENGHVPFP 74

[Close]

BLAST of CmoCh19G006850 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-22
Identity = 46/73 (63.01%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 5  SAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQ 64
          S  GS   W+AK+NKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++L++D+K 
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGEVPFPYGRS 78
          IESG+VPFP  R+
Sbjct: 63 IESGKVPFPNYRT 75

[Close]

BLAST of CmoCh19G006850 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-21
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS S   SA SWT K+NK FE+ALA YDQDTP+RW NVA+A+GGK+ EEV+RHY+LL++
Sbjct: 1  MASNSMSSSA-SWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIR 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DV  IESG  P P  RS
Sbjct: 61 DVNDIESGRYPHPNYRS 76

[Close]

BLAST of CmoCh19G006850 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-19
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS ++  S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKQIESGEVPFP 74
          D+  IE+G VP P
Sbjct: 61 DLINIETGRVPLP 72

[Close]

BLAST of CmoCh19G006850 vs. ExPASy TrEMBL
Match: A0A6J1GKK4 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454836 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.5e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK
Sbjct: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60

Query: 61 DVKQIESGEVPFPYGRSR 79
          DVKQIESGEVPFPYGRSR
Sbjct: 61 DVKQIESGEVPFPYGRSR 78

[Close]

BLAST of CmoCh19G006850 vs. ExPASy TrEMBL
Match: A0A5A7T3V4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00070 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASM+AHG +  WTAKQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLL++
Sbjct: 1  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60

Query: 61 DVKQIESGEVPFPYGR 77
          DVK IESGE+PFPY R
Sbjct: 61 DVKHIESGEIPFPYRR 76

[Close]

BLAST of CmoCh19G006850 vs. ExPASy TrEMBL
Match: A0A1S3BGF6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS G WTAKQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1  MASMSAHGS-GVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRSR 79
          DVK IESG+VPFPY  SR
Sbjct: 61 DVKHIESGKVPFPYRTSR 77

[Close]

BLAST of CmoCh19G006850 vs. ExPASy TrEMBL
Match: A0A5A7SYM4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00290 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.0e-29
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS G WTAKQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1  MASMSAHGS-GVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRSR 79
          DVK IESG+VPFPY  SR
Sbjct: 61 DVKHIESGKVPFPYRTSR 77

[Close]

BLAST of CmoCh19G006850 vs. ExPASy TrEMBL
Match: A0A6J1C4J2 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007855 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS G+W+A QNKAFE+ALAVYD+DTP+RWLNVA AIGGKTEEEVKRHYQLL++
Sbjct: 1  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVE 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DVK IESGEVPFPY  S
Sbjct: 61 DVKHIESGEVPFPYRSS 77

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: XP_022952074.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG6572044.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011711.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.8 bits (403), Expect = 9.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK
Sbjct: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60

Query: 61 DVKQIESGEVPFPYGRSR 79
          DVKQIESGEVPFPYGRSR
Sbjct: 61 DVKQIESGEVPFPYGRSR 78

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 6.4e-29
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS G WTAKQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1  MASMSAHGS-GVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRSR 79
          DVK IESG+VPFPY  SR
Sbjct: 61 DVKHIESGKVPFPYRTSR 77

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: KAA0036165.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK19711.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 6.4e-29
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASM+AHG +  WTAKQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLL++
Sbjct: 1  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60

Query: 61 DVKQIESGEVPFPYGR 77
          DVK IESGE+PFPY R
Sbjct: 61 DVKHIESGEIPFPYRR 76

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: KAA0036170.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-28
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS G WTAKQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLLL+
Sbjct: 1  MASMSAHGS-GVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKQIESGEVPFPYGRSR 79
          DVK IESG+VPFPY  SR
Sbjct: 61 DVKHIESGKVPFPYRTSR 77

[Close]

BLAST of CmoCh19G006850 vs. NCBI nr
Match: XP_022136072.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-28
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MASMSAHGS G+W+A QNKAFE+ALAVYD+DTP+RWLNVA AIGGKTEEEVKRHYQLL++
Sbjct: 1  MASMSAHGSDGAWSAMQNKAFERALAVYDEDTPQRWLNVANAIGGKTEEEVKRHYQLLVE 60

Query: 61 DVKQIESGEVPFPYGRS 78
          DVK IESGEVPFPY  S
Sbjct: 61 DVKHIESGEVPFPYRSS 77

[Close]

BLAST of CmoCh19G006850 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 111.7 bits (278), Expect = 2.7e-25
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 2  ASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKD 61
          +SMS+  S+GSWTAKQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LL++D
Sbjct: 4  SSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 63

Query: 62 VKQIESGEVPFPYGRS 78
          +  IE+G VPFP  R+
Sbjct: 64 INSIENGHVPFPNYRT 78

[Close]

BLAST of CmoCh19G006850 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 7.8e-25
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 3  SMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDV 62
          SMS++GS GSWT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LL++D+
Sbjct: 5  SMSSYGS-GSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KQIESGEVPFP 74
          + IE+G VPFP
Sbjct: 65 ESIENGHVPFP 74

[Close]

BLAST of CmoCh19G006850 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS ++  S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKQIESGEVPFP 74
          D+  IE+G VP P
Sbjct: 61 DLINIETGRVPLP 72

[Close]

BLAST of CmoCh19G006850 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS ++  S   WT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +L++
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 61 DVKQIESGEVPFP 74
          D+  IE+G VP P
Sbjct: 61 DLINIETGRVPLP 72

[Close]

BLAST of CmoCh19G006850 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 95.5 bits (236), Expect = 2.0e-20
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60
          MAS S+  S+ SWT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +L++
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKQIESGEVPFP 74
          D+  IE   VP P
Sbjct: 61 DLMNIEQDLVPLP 72

The following BLAST results are available for this feature:

BLAST of CmoCh19G006850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	3.8e-24	69.74	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	1.1e-23	71.83	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	2.7e-22	63.01	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	3.0e-21	64.94	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	2.2e-19	63.01	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of CmoCh19G006850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKK4	4.5e-36	100.00	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454836 PE=4 SV=1	[more]
A0A5A7T3V4	3.1e-29	85.53	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BGF6	3.1e-29	87.18	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
A0A5A7SYM4	9.0e-29	85.90	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1C4J2	1.2e-28	83.12	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007855 PE=4 SV=1	[more]

BLAST of CmoCh19G006850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952074.1	9.2e-36	100.00	protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-li...	[more]
XP_008447025.1	6.4e-29	87.18	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
KAA0036165.1	6.4e-29	85.53	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK19711.1 protein RADIALIS-...	[more]
KAA0036170.1	1.9e-28	85.90	protein RADIALIS-like 1 [Cucumis melo var. makuwa]	[more]
XP_022136072.1	2.4e-28	83.12	protein RADIALIS-like 1 [Momordica charantia]	[more]

BLAST of CmoCh19G006850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.7e-25	69.74	RAD-like 1	[more]
AT2G21650.1	7.8e-25	71.83	Homeodomain-like superfamily protein	[more]
AT1G75250.1	1.5e-20	63.01	RAD-like 6	[more]
AT1G75250.2	1.5e-20	63.01	RAD-like 6	[more]
AT1G19510.1	2.0e-20	63.01	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 e-value: 3.7E-8 score: 43.1
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 5..59 score: 6.527576
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..59 e-value: 6.34984E-7 score: 39.8662
None	No IPR available	GENE3D	1.10.10.60		coord: 4..72 e-value: 1.9E-23 score: 84.0
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 1..74
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 11..59 e-value: 3.4E-6 score: 27.1
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..74
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G006850.1	CmoCh19G006850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity