CmoCh19G006720 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G006720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr19: 7167482 .. 7175496 (-)
RNA-Seq ExpressionCmoCh19G006720
SyntenyCmoCh19G006720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGAGCCTCATTTGTTGATGACAATCAGTTTGTCGCATAAGTTTATGTAATTCTTCTTCTTAGTGAACGTATTGATTCTTGTTTATTTGCTAGGATTTTGGTTCCTCTGTTCATGCTTCAATATATTTTAGATCTTCAGCCAGGATAGTTTCTGCAATGGTCACAATTATAACTCATTTGTTAAACTATAATATGATCATATGGCTACGAAATGTCCAATAGAAAGATTTTGAACTATAATATGATCATATGGCTGTTCAGAATACAAAAGGACTATAAAGTCTGGCAGGCTGAATTAGATTCTTTTTCCTTCCAAATTTAAAACTGTTCCTGGTTGAATATAATACAACATTCAAATCAAATTGGTTACACAGTAAACTGAAGTGAACTCTACTGTATTAAAATGGTTGCGATCTCAACCTGCAAGCTAATATTGATTTACTTTGACCCAACAGAAGAAAGTGTGTCCTGATTTGCAGGGCGAAATGAACTCCCAGAAATTGTTGTACCGGTTGTTGGGTATTGGGGGTTAGGGTTAGAGGCAGCCATACCCGGCAGTCCCGACGTCGGGGGCCTTTGGGGAACCATGCCCATTGGAGGCCTTGGGACTGTGTTTGCAAAGTTCATGGGCATCCTGTTTGTTGGTAATGTTGGTGCCCCACCTCGTGATGACGAAGCAGGTAAGCCTAGTCGAGCAGCGATTATCTGTGCACGTTCCTGGAAAAGCCTCTGCTTTGACCTGTCTAGTTGCTCCCTCATTCTCACCGTCACGTTTTCCATGTCGTTGAAGAATGCTAACTTGCTTTCCAACTTATGCAGCTATAAATAGAGAGGGTAGTGTAAGTTTTGTTTAAAATGTATGGGAAGGGAAACAACTTCAGTTGAGATACCTGTTTTTCGATTAATATCATGGCAAGTTGACGGATTTGGTCCTCTTCTTGATTAGCCAGGATTTTTGCCTTCACTGCTGCTGCTGACAGTGTCGTAACCGCAGCACGCTTGAACTTGTCGATTTTATCCTCTTTTTTACTCATACAATTGGAGTTTTCTTCTTTGTTGTCCTTGCTTTGATTATCATCTGTTAAAGAACAAATAAACAGGTACTATAAGAAAAAAATGCATTCTCGTATACTTCTCAGCAAAACAAGATTCATTAATTTGCAGAGTGTGTTCAACACTCCTAAAAGTCCAGAGAATCAATCATGCTTATAGCGTTCCTCACACATTTTAAAATTCAGCAGATCAGATCAAGCATGATACATAATACAATGATACGACAACAGAAGGACGACAAGAAGTTATACCAACTTGAGCTAAAAAAAACCGAGCGAAATTTCAAAGTCGAAAGACTTTGTCCTCGATATAATCTTTCTAAAGACAAGTCATAAGACTGATCATCACCTTGAAATTTTTCATTGTACAGAATTCTTTCTTGGGAAGAAGATAGACTTCTTTCAAAGACGTCTCCATACCCTTAAAAATCGAACTTAATAGTCTCTGAACACTCTTGAAACGAGGTCATCAATTCTGAACTCGGCACATTACAACCATCAAAACTAAACACTACCTGCTTAGTCTCCTCAATAATTACCCACCGTAGTTTACAAAAGAATTTTGTATATAAAGAGATCCATCAAGACCTCGTATTATGTACAAGATTAAAAAAAGAATAATCAAAATAAGAGAACTTATCTTCAAAGGAGCACATATTTCTTTCCTGCCAGATGTGCCACAAAAGATCTCTAAACGCACAACTTCTAACAATCTTTATCTTTCCTTTTCAAGTTCCATGCATGAATGAATACCTTCCATAAACCAATCGTCCACCTTCTTATGGAGGAAAAAAGAAATTCCTAAGTTCCCACCAAGTGGTAGAGGCAAAGTCAATGGAGGAGCAGGTGATTAAGGGTTTCCTCCATATTCAAACACATCCTTCAACCTGATGGTGAAGGGGAACCACCTCCTACACTTTCAGTTAATCCTTCATTATTAACGAGAGACAAAGTTTTGTTTTTGTATCTCCCGAAACCGACAATTCTATGAAAGAAAGATTATGATCCCCTTACTTTCCACGAAGCTCTTGATTTCTATTTCCAACTTACTCTCTCTGAACTTAGGCAATTACTTTCCTCAAGAGAGTTAAGTCCTTTATGCATATAAAAGTTTCTTGTTCCCTTCATGGCTTACACAAATTTCACGAAAGATGGAGACGCATTCTGATCCCACAATAGTGACCTAAGGAAAGAAAGCCTTTTCATGAAATTAAACCCTTCCCACCTTTTCATTTGTTTTTCTTCAGTTCTTTCAGAAAAATATTTGGGATTTTATGTTTGCATGTTTCTGGATTATGTTGGGTTTTTCGCAGTTCACTAAAAGGAAATGTGGAACAATTAGTAGGTGGAACTTATATCAAGGGAAGAACTAAAAGTTGTGGATTGGTACGGGTAACTCAATACAATGGAAGATTCTGCTGGAAAGAAATAATTGAAAATTTAACGAGCCTTCAAGTGTTATTGTTCTCTCTTTCTCTCTCTTTGGGTTGTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGGAGAGGTGGAGGTGTCAGATTGTTTACCGTGCAAGATGGGTATCTCATGAGAGAGGGATCCAAATAACCCACACTCATCAATGGAAGCCTTGTCAAATCATAATCTCTGACTAAACACCAGCACTAAGTGCACAGACCAAGCCAACCTCCTAGCTCCTCCTAGAAACAATCCCTCTCCCGATACCTGGAGGGACTATAATCACATTTATGGAATAGAATGAATAAATTCTAGGATCCATGAACTAATCCCAGGCTAGGAAGGTTGTGAGTCCATACAACCAAGATGCCTCCAGAAGACCTTATAGGATCAAGGGATTCACTCAAAAAAACTGATCTCTCTAAATAATATGAATTGGATTCCCATGAACCCTAGAACACTTTGTCTCTTGAAGGATAAACAAGTCATGCTTTGCTTGAGACAATTTCCCTAAAAAGTTTCCACTTAACTTTCACTTCAAACATGAATTTGAAGAGATATTTGAAAGACAAAATATTGGATGACTCGAGAAAAAAAATGCCTATCCTGAAATACTAAGTCAAGGGATCACCATGTATGAGGGAAAGTATGTCAAACAGGATTTTGCAGTTTGTTTCATTTAATTTCATCTCAAGAGTCACGATAATCTTTTGCGAGAAGGCATCAAGCTTGAAGGAAGAATGTCAAAACCAATTAGCAAAGAGAGCAAAGTTCTTCATCTCTAAATTCCCAACCCCTCTACACCACCCCCTGGCCCCTCCAACAAAGTGGGCCATAATTTCTCTAACTTGGAATATGGTTGAAGAAGGACAAGAAAGAAAGTGAGAGCTAAATTATCTGATTGGTTTTGTCAGTTACGTATGCTTCCCCCTAGAACATTACACTTTCCTCCAAGAAGTCCTACACTTTTGCGGTTCTTGATGATCCTTTTTTTTCTTTTTTTTCAAGAAATATACATAACAGTACACGAGGAAGTTCCTAAAAACAAATCAAAGTCAATACTATTCAATAGGAAATAACTTGTACTCACCATCCTCTTGGAATGTGCAAGCTTTGGATAGCCTTGAATAATTTATTTTAAAAAAAATTGAAAAATGCAATCTGAATTGGTGGGAGGTTCAAAAATACAAAATTATAGCTGGGAAAAAAAAAAAAAGAAACACGTACCTGCTCCTCTTTCAATAACCGAAGTTGGTTTTACTGGTAGTGGAGTTGCATTCTCTGTTGAGGGCAAAGAATCAGCGACCTTGCTTGCTTCCTGGTCAACCACGGATTTAGACGTTTCAGTTTTTGCAGGTTCATTCCCATTGTGAGAATCAGGTATAATAGCTACATCTTTTGAGGCTTCTTTCACTGAATTAGCAGAAATTGTTGGTTGAGGCTCGTTTGCAGAGGGTAAATGATTTGGCTCGTCATCTAATTCTTTTTTAGTTTTGGCAGAATGAGATGGAACTTGCTTCTGAATCTCAGTTTTTTCAGCATGTTGCAAATCTGACATATGAACATCCTTGGGTGACAACTTAGGTTGTGATGGTTTTTCAGCAGAAGTTCCTTCTCCCAATTTTTCAACTGGATTTGATGTCGATTTTGATTCTACATTTTCAGATTCCTTCACAATGCCTGTTCTTTCAACCTCAGGTATTTCTGGTTCTCTCAATTCTTTCAAATTACTTGTTCTATCTGAATCATGATTAGTAATTGGATTGTGTTCTATAATAGCATCTGAAGAATTTTCATTATCTATAGTTTCCTTTGTCACCGATTCTCCATTTTTGTTATTACCGTCATTAGCTGATAGGGCTCCGTCATCTAAGACCGAAGTAGAATTGTCTGGTCTCTGTTTCGCACACTGTTCCTTGTCATTTTTCTGAGCTTCCACATTGACAATACTGCAAAAGTATCACTGTGATCAAAGAATAGAACAAAACTGAAACAAGCATGTCAAGTCTCAACGTCAAGTACCTCTCTGAATTAGCTTTGGCCTTCTGATCATCTGGTGGATCTTCTAAAATAAAGCAGTGCCTTGTAGCCAGTTCTAAACTGGGAGATTTCTGAGATACGCTTTTCAAAGAAAAACGGGCTGATGCACTGGCAACATCTGATCCAACTAAGCGTGCAAGGAATGCAGCCTGAAAAGCAGATATTTAAATAGTTGAGCAATCAGGAATGAAATTTATGATTATAAGGAGTGCTAATGAAGGGCAAAGAGTACACACTTCACTATTTCTGCTCCACCAATAAATATAATAAGCATGACAATTACTAACTGAAGGTCATCCTGAGCACGGACAGAAGCTAATGAACGAATTGTAACGATAGCTGCCAAAACTTGGTTCATGTACAGATACGGATGACAAAACGAAATCCTAGAATGCTAAGGCAGGTTCAAGGTAAACCTTCATTTTCTAGTGGAGAGAATTATTTGAATTGAACATATAAAGAATAAAAGGGAAAAAGATAGCAAGAATCTAGAATCAACGAAGTTAACATACACCTTCAAGCAAAGTAGTAAAGTTCATACAAAGTGAACGTCAAACTGCTCCTTTGCAGCGCAGACCTGGTGCATCTTATAGGCTAACAAGAAATAAGATGCCTGCCATGACATCCAAAAAATCCATCACGGAAGAAATCATCTTCCATCTATGAGACTTAAGAAAATTCCAGAAACCAAGTTCAATATACAAGGAACCAGCTTAAGTGATGACTCTTAAGTTTTTGTTTGCTGCGCAAATCTAAATAGTGGTTTTACTTTTAGATTTTTATTTTATGGAAAGCGAGGAACTTCAAAACCATGCGACTAATCCTAGCGTGATTCAGAACAATGAAATAACCATAAATTTGAGGCATACCAATGAATAAAAACTATTCAAGATCGATTAAAGAAAATTAGGACTACCAATTTCATTAGTCCTTACGTTCTAAATTCCACTTACCAATGCCATGACAGGGTTCCCTACATCAGCAAATGATAGTGGGTGCTCAGGTGTTAGTACATAACCAATGGCTTCAAATGCCTCCCTCAAAGCATTCAAGGCAATGTCTTCAGAAACCTTCTGATCACCATCTTCTAATTTGGAGTTATCTAAAGCAGCTTTTCCTTCAACATCCTCTGATTTTGAATTATCCAGCCCAACTTTTACCTCACCTGTATCTTCCTTGGTTGCAGTTTCTGTATTCGAAGCCTCTTTTTCAGTAGCCTTATTATCCATTGATTCAGTGATATCAGTAGGGACTGATGAATCATTTTCAGTTAAAGGTGGAACAGTTTCTTTTGCACCGTCTTCAACATTATCCTCAGATTCAAGAAAGGTATCCTCAATTGGCATTTGAATGAAGTGCAATATACATTGGGCTTTTGTTTTGGTGGCCACATGTTCAGCAATCTCATTCCAGTTTTCCTTATAAAGCTCTAAAGCCTCAAGGAGGAGGAGAGTTTCCTGATCTGTCCACTTACCTCCACTAGCACCAGGAACCCCAACGGACTCCATGAGAATAAAATCTGATGAAGACATATCGGAATCAAATTTCCCATTGTTAAAGCACTCCGAACATAAATCAAAATCTGCCTGTCAAAGATGAATATTATTAGTTGATATGTCAATGAATACACATAACTGTTGACTTATGAGACTACTCATGAAATTTAATGTCATGATTTTGCATCCATGAGATTCTAAAATACAAGTTTGATATTCCAACAATGAACTGCTTAAAGAAGGAATTTTGAATTGACAACCCACCTGCTCCTGGGTTCTGTCTGGTATATGACACTTTTTTTCTTTTTTTTTTTTGGTAATTATAGGCTAGTCCTAATTCCTAAGATTGGAATCATTAGTTTTTGTTGGGAGGGGGCCCTCTCATCTCCTTGCCCTTAGGCTGCTCCTTGCTTGTTAATAAAATTCCTTTGTTCCTAATTAAAAAAACAAACAAACAAAAGAAGAAAAAAGAAACCAACCTGCTTCTGGCAGTGGTAACGTTTCCGAGAGCAATCAGCAGAGCATGAGTTACAGTGGTACTCAACAGATGGACCCTCAGGCCTCGTCATCTCTTCAGAAATTGCAGATTCTCTAAGCAATCTAGGTGGAGCTGCAGTGGTAACATTGATCTTCGGAACAATAGATGGGCAGGATTCTAATGTTTCAAAGTGAAACAACTTCTCAACCAAAGAGTCCTTTTGACTTTCATCGTCAAGATCACTTGTTGAAATTGATTCTGCAGATAGGAAAGGGTGAAAATTAATCAAACCCCAATGGTCAAGAAACTCCATCACCTCCTTTCTAGCATCTTGTTCTCCAACTTCCATCTCTGATAGATCTTTTGCTTCAAGCTGCGTACTGGGATTTGCATGGAATTTTTTCATAATCCAATTACGTATCTTGATATATATATCAGGACTTCGAGTGCCATCCTTTCCACTGA

mRNA sequence

ATGCCTGAGCCTCATTTGTTGATGACAATCAGGCGAAATGAACTCCCAGAAATTGTTGTACCGGTTGTTGGGTATTGGGGGTTAGGGTTAGAGGCAGCCATACCCGGCAGTCCCGACGTCGGGGGCCTTTGGGGAACCATGCCCATTGGAGGCCTTGGGACTGTGTTTGCAAAGTTCATGGGCATCCTGTTTGTTGGTAATGTTGGTGCCCCACCTCGTGATGACGAAGCAGATTCCTTCACAATGCCTGTTCTTTCAACCTCAGTAGGGACTGATGAATCATTTTCAGTTAAAGGTGGAACAGTTTCTTTTGCACCGTCTTCAACATTATCCTCAGATTCAAGAAAGGACTTCGAGTGCCATCCTTTCCACTGA

Coding sequence (CDS)

ATGCCTGAGCCTCATTTGTTGATGACAATCAGGCGAAATGAACTCCCAGAAATTGTTGTACCGGTTGTTGGGTATTGGGGGTTAGGGTTAGAGGCAGCCATACCCGGCAGTCCCGACGTCGGGGGCCTTTGGGGAACCATGCCCATTGGAGGCCTTGGGACTGTGTTTGCAAAGTTCATGGGCATCCTGTTTGTTGGTAATGTTGGTGCCCCACCTCGTGATGACGAAGCAGATTCCTTCACAATGCCTGTTCTTTCAACCTCAGTAGGGACTGATGAATCATTTTCAGTTAAAGGTGGAACAGTTTCTTTTGCACCGTCTTCAACATTATCCTCAGATTCAAGAAAGGACTTCGAGTGCCATCCTTTCCACTGA

Protein sequence

MPEPHLLMTIRRNELPEIVVPVVGYWGLGLEAAIPGSPDVGGLWGTMPIGGLGTVFAKFMGILFVGNVGAPPRDDEADSFTMPVLSTSVGTDESFSVKGGTVSFAPSSTLSSDSRKDFECHPFH
Homology
[Close]
BLAST of CmoCh19G006720 vs. ExPASy TrEMBL
Match: A0A6A6M1U3 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_008760 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 12  RNELPEIVVPVVGYWGLGLEAAIPGSPDVGGLWGTMPIGGLGTVFAKFMGILFVGNVGAP 71
           R ELP  VV   G  G+G    +P    +GGLW  M I GLG  FA+F+ IL VGNVG  
Sbjct: 272 RIELPAAVVDTNGLEGVG--DNVPMGLAIGGLWEVMLIRGLGIEFAQFVAILLVGNVGGI 331

Query: 72  PRDDEA 78
           P D++A
Sbjct: 332 PLDEDA 335

[Close]
BLAST of CmoCh19G006720 vs. NCBI nr
Match: KAF2305899.1 (hypothetical protein GH714_008760 [Hevea brasiliensis])

HSP 1 Score: 54.7 bits (130), Expect = 6.7e-04
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 12  RNELPEIVVPVVGYWGLGLEAAIPGSPDVGGLWGTMPIGGLGTVFAKFMGILFVGNVGAP 71
           R ELP  VV   G  G+G    +P    +GGLW  M I GLG  FA+F+ IL VGNVG  
Sbjct: 272 RIELPAAVVDTNGLEGVG--DNVPMGLAIGGLWEVMLIRGLGIEFAQFVAILLVGNVGGI 331

Query: 72  PRDDEA 78
           P D++A
Sbjct: 332 PLDEDA 335

The following BLAST results are available for this feature:
BLAST of CmoCh19G006720 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh19G006720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A6M1U33.2e-0448.48Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_008760 PE=4 SV=1[more]
BLAST of CmoCh19G006720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF2305899.16.7e-0448.48hypothetical protein GH714_008760 [Hevea brasiliensis][more]
BLAST of CmoCh19G006720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G006720.1CmoCh19G006720.1mRNA