CmoCh19G006670 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G006670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	hydroxyproline-rich glycoprotein family protein
Location	Cmo_Chr19: 7153673 .. 7154050 (-)
RNA-Seq Expression	CmoCh19G006670
Synteny	CmoCh19G006670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCTCAAATACCGAGAGAGACGGGGCCGATCGAGCCACCATATCCATGGTTGACGAACCAAAGAGCGGTGGTTCATACACTAAACTATATGACATCGAACCAAATCCTAACGATCACTGGGGATGTCAAGTGCCACCATTGTCAAAGAATTTACGAGATCGAATACGACATTGTTTTGAAGTTCAACGAGATCGGGAGCTTCGTAGAGAACAACATGGAGTCGCTCCAGGACCGGACGCCGAGGTCGTGGATATGGCCGAATTATTCGACGTGTCGGTTTTGCGGGACGGAAAAAGGAGTGAGGCCGGTGATTCCAAAGGAATGTGAGAAGATCAATTGGGTGTTCTTGCTTTTGGGAGAAATGGTGTTGTAA

mRNA sequence

ATGAAATCTCAAATACCGAGAGAGACGGGGCCGATCGAGCCACCATATCCATGGTTGACGAACCAAAGAGCGGTGGTTCATACACTAAACTATATGACATCGAACCAAATCCTAACGATCACTGGGGATGTCAAGTGCCACCATTGTCAAAGAATTTACGAGATCGAATACGACATTGTTTTGAAGTTCAACGAGATCGGGAGCTTCGTAGAGAACAACATGGAGTCGCTCCAGGACCGGACGCCGAGGTCGTGGATATGGCCGAATTATTCGACGTGTCGGTTTTGCGGGACGGAAAAAGGAGTGAGGCCGGTGATTCCAAAGGAATGTGAGAAGATCAATTGGGTGTTCTTGCTTTTGGGAGAAATGGTGTTGTAA

Coding sequence (CDS)

ATGAAATCTCAAATACCGAGAGAGACGGGGCCGATCGAGCCACCATATCCATGGTTGACGAACCAAAGAGCGGTGGTTCATACACTAAACTATATGACATCGAACCAAATCCTAACGATCACTGGGGATGTCAAGTGCCACCATTGTCAAAGAATTTACGAGATCGAATACGACATTGTTTTGAAGTTCAACGAGATCGGGAGCTTCGTAGAGAACAACATGGAGTCGCTCCAGGACCGGACGCCGAGGTCGTGGATATGGCCGAATTATTCGACGTGTCGGTTTTGCGGGACGGAAAAAGGAGTGAGGCCGGTGATTCCAAAGGAATGTGAGAAGATCAATTGGGTGTTCTTGCTTTTGGGAGAAATGGTGTTGTAA

Protein sequence

MKSQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGEMVL

Homology

[Close]

BLAST of CmoCh19G006670 vs. ExPASy TrEMBL
Match: A0A6J1GLD4 (uncharacterized protein LOC111455388 OS=Cucurbita moschata OX=3662 GN=LOC111455388 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.8e-50
Identity = 95/123 (77.24%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 2   KSQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVL 61
           KS  P  TGPIEPPYPW T++ AVVHTL+Y+TSNQILTITG+VKC  C+RIYEIEYD+V 
Sbjct: 57  KSNSP-TTGPIEPPYPWSTDRIAVVHTLHYLTSNQILTITGEVKCQQCRRIYEIEYDVVS 116

Query: 62  KFNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLG 121
           KFNEIGSFVE+NMES +DR P+ W+ PNY TCRFCG EKGV+PVIPKE EKINWVFLLLG
Sbjct: 117 KFNEIGSFVEHNMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLG 176

Query: 122 EMV 125
           EMV
Sbjct: 177 EMV 178

[Close]

BLAST of CmoCh19G006670 vs. ExPASy TrEMBL
Match: A0A6J1I5V9 (uncharacterized protein LOC111470968 OS=Cucurbita maxima OX=3661 GN=LOC111470968 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.5e-49
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 9   TGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGS 68
           TGPIEPPYPW T++ AVVHTL+Y+T NQILTITGDVKC  C+RIYEIEY++V KFNEIGS
Sbjct: 54  TGPIEPPYPWSTDRIAVVHTLHYLTLNQILTITGDVKCQQCRRIYEIEYNVVSKFNEIGS 113

Query: 69  FVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGEMV 125
           FVE+NMES +DR P+ W+ PNY TCRFCG EKGV+PVIPKE EKINWVFLLLGEMV
Sbjct: 114 FVEHNMESFRDRAPKKWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMV 169

[Close]

BLAST of CmoCh19G006670 vs. ExPASy TrEMBL
Match: A0A0A0K3Q8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259350 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.7e-40
Identity = 80/122 (65.57%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 3   SQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLK 62
           S+ PR T  IEPPYPW TN+RA+V TLN + SNQIL ITGDV+C  CQ  Y IEYD+  K
Sbjct: 67  SRSPRTTETIEPPYPWSTNRRAMVRTLNDLKSNQILQITGDVQCRQCQVEYTIEYDMDSK 126

Query: 63  FNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGE 122
           F EI SFVE N  S +DR P+SW+ PNY TCRFCG E G RPVIPK+  KINW+FLLLGE
Sbjct: 127 FEEIASFVEENKNSFRDRAPQSWMNPNYPTCRFCGHENGARPVIPKQWRKINWLFLLLGE 186

Query: 123 MV 125
           M+
Sbjct: 187 ML 188

[Close]

BLAST of CmoCh19G006670 vs. ExPASy TrEMBL
Match: A0A5A7T547 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00840 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.3e-40
Identity = 80/122 (65.57%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 3   SQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLK 62
           S+ PR T  IEPPYPW TN+RA+V TLN + S+QIL ITGDV+C  CQ  Y IEYD+V K
Sbjct: 61  SRSPRTTETIEPPYPWSTNRRAMVRTLNDLRSSQILQITGDVRCRQCQIEYTIEYDMVSK 120

Query: 63  FNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGE 122
           F EI SFVE N    +DR PRSW+ PNY TCRFCG E G RPVIP E  KINW+FLLLGE
Sbjct: 121 FEEIASFVEENKNLFRDRAPRSWMNPNYPTCRFCGHENGARPVIPDEWRKINWLFLLLGE 180

Query: 123 MV 125
           M+
Sbjct: 181 ML 182

[Close]

BLAST of CmoCh19G006670 vs. ExPASy TrEMBL
Match: A0A1S3BHR1 (uncharacterized protein LOC103489770 OS=Cucumis melo OX=3656 GN=LOC103489770 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.3e-40
Identity = 80/122 (65.57%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 3   SQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLK 62
           S+ PR T  IEPPYPW TN+RA+V TLN + S+QIL ITGDV+C  CQ  Y IEYD+V K
Sbjct: 61  SRSPRTTETIEPPYPWSTNRRAMVRTLNDLRSSQILQITGDVRCRQCQIEYTIEYDMVSK 120

Query: 63  FNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGE 122
           F EI SFVE N    +DR PRSW+ PNY TCRFCG E G RPVIP E  KINW+FLLLGE
Sbjct: 121 FEEIASFVEENKNLFRDRAPRSWMNPNYPTCRFCGHENGARPVIPDEWRKINWLFLLLGE 180

Query: 123 MV 125
           M+
Sbjct: 181 ML 182

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: KAG6572025.1 (hypothetical protein SDJN03_28753, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259.2 bits (661), Expect = 1.8e-65
Identity = 117/123 (95.12%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MKSQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIV 60
           MKSQ PRETGPIEPPYPW TNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIY+IEYDIV
Sbjct: 52  MKSQTPRETGPIEPPYPWSTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYKIEYDIV 111

Query: 61  LKFNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLL 120
            KFNEIGSFVENNMESLQDRTPRSWIWP+Y TCRFCGTEKGVRPVIPKECEKINWVFLLL
Sbjct: 112 SKFNEIGSFVENNMESLQDRTPRSWIWPDYPTCRFCGTEKGVRPVIPKECEKINWVFLLL 171

Query: 121 GEM 124
           GEM
Sbjct: 172 GEM 174

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: KAG7011696.1 (hypothetical protein SDJN02_26602, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.2 bits (661), Expect = 1.8e-65
Identity = 117/124 (94.35%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 1   MKSQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIV 60
           MKSQ PRETGPIEPPYPW TNQRA VHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIV
Sbjct: 52  MKSQTPRETGPIEPPYPWSTNQRAAVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIV 111

Query: 61  LKFNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLL 120
            KFNEIGSFVENNMESLQDRTPRSWIWP+Y TCRFCGTEKGVRPVIPKECEKINWVFLLL
Sbjct: 112 SKFNEIGSFVENNMESLQDRTPRSWIWPDYPTCRFCGTEKGVRPVIPKECEKINWVFLLL 171

Query: 121 GEMV 125
           GEM+
Sbjct: 172 GEML 175

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: XP_022952797.1 (uncharacterized protein LOC111455388 [Cucurbita moschata])

HSP 1 Score: 208.4 bits (529), Expect = 3.6e-50
Identity = 95/123 (77.24%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 2   KSQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVL 61
           KS  P  TGPIEPPYPW T++ AVVHTL+Y+TSNQILTITG+VKC  C+RIYEIEYD+V 
Sbjct: 57  KSNSP-TTGPIEPPYPWSTDRIAVVHTLHYLTSNQILTITGEVKCQQCRRIYEIEYDVVS 116

Query: 62  KFNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLG 121
           KFNEIGSFVE+NMES +DR P+ W+ PNY TCRFCG EKGV+PVIPKE EKINWVFLLLG
Sbjct: 117 KFNEIGSFVEHNMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLG 176

Query: 122 EMV 125
           EMV
Sbjct: 177 EMV 178

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: XP_022972401.1 (uncharacterized protein LOC111470968 [Cucurbita maxima])

HSP 1 Score: 205.3 bits (521), Expect = 3.1e-49
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 9   TGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGS 68
           TGPIEPPYPW T++ AVVHTL+Y+T NQILTITGDVKC  C+RIYEIEY++V KFNEIGS
Sbjct: 54  TGPIEPPYPWSTDRIAVVHTLHYLTLNQILTITGDVKCQQCRRIYEIEYNVVSKFNEIGS 113

Query: 69  FVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGEMV 125
           FVE+NMES +DR P+ W+ PNY TCRFCG EKGV+PVIPKE EKINWVFLLLGEMV
Sbjct: 114 FVEHNMESFRDRAPKKWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMV 169

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: KAG7011694.1 (hypothetical protein SDJN02_26600, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 9.9e-48
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 10  GPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGSF 69
           GPIEPPYPW T++ AVVHTL Y+TSNQILTITG+VKC  C+RIYE+EYD+V KFNEIG F
Sbjct: 2   GPIEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRF 61

Query: 70  VENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGEMV 125
           VE+ MES +DR P+ W+ PNY TCRFCG EKGV+PVIPKE EKINWVFLLLGEMV
Sbjct: 62  VEHKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMV 116

[Close]

BLAST of CmoCh19G006670 vs. TAIR 10
Match: AT1G49330.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-30
Identity = 49/121 (40.50%), Postives = 79/121 (65.29%), Query Frame = 0


Query: 2   KSQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVL 61
           +S + +++  I PP+PW TN+R  + +L Y+ SNQI TITG+V+C HC+++Y++ Y++  
Sbjct: 157 RSTVSKKSDTISPPFPWATNRRGEIQSLEYLESNQITTITGEVQCRHCEKVYQVSYNLRE 216

Query: 62  KFNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLG 121
           +F E+  F       ++DR  + W +P    C  CG EK V+PVI +   +INW+FLLLG
Sbjct: 217 RFAEVVKFYLTEKRKMRDRAHKDWAYPEQRRCELCGREKAVKPVIAERKSQINWLFLLLG 276

Query: 122 E 123
           +
Sbjct: 277 Q 277

[Close]

BLAST of CmoCh19G006670 vs. TAIR 10
Match: AT2G16190.1 (BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1); Has 77 Blast hits to 77 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants - 56; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-21
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 12  IEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGSFVE 71
           I PPYPW T +   + +   ++SN I  I+G V C  C R   +EY++  KF+E+  +++
Sbjct: 147 IVPPYPWATKKPGKIQSFRDLSSNNINVISGQVHCKTCDRTDTVEYNLEEKFSELYGYIK 206

Query: 72  NNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGEMV 125
            N E ++ R P SW  P    CR C +E  ++PV+ +  E+INW+FLLLG+M+
Sbjct: 207 VNKEEMRHRAPGSWSTPKLIPCRTCKSE--MKPVMSERKEEINWLFLLLGQML 257

[Close]

BLAST of CmoCh19G006670 vs. TAIR 10
Match: AT2G16190.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-21
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 12  IEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGSFVE 71
           I PPYPW T +   + +   ++SN I  I+G V C  C R   +EY++  KF+E+  +++
Sbjct: 147 IVPPYPWATKKPGKIQSFRDLSSNNINVISGQVHCKTCDRTDTVEYNLEEKFSELYGYIK 206

Query: 72  NNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGEMV 125
            N E ++ R P SW  P    CR C +E  ++PV+ +  E+INW+FLLLG+M+
Sbjct: 207 VNKEEMRHRAPGSWSTPKLIPCRTCKSE--MKPVMSERKEEINWLFLLLGQML 257

The following BLAST results are available for this feature:

BLAST of CmoCh19G006670 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G006670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GLD4	1.8e-50	77.24	uncharacterized protein LOC111455388 OS=Cucurbita moschata OX=3662 GN=LOC1114553...	[more]
A0A6J1I5V9	1.5e-49	78.45	uncharacterized protein LOC111470968 OS=Cucurbita maxima OX=3661 GN=LOC111470968...	[more]
A0A0A0K3Q8	3.7e-40	65.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259350 PE=4 SV=1	[more]
A0A5A7T547	6.3e-40	65.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BHR1	6.3e-40	65.57	uncharacterized protein LOC103489770 OS=Cucumis melo OX=3656 GN=LOC103489770 PE=...	[more]

BLAST of CmoCh19G006670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572025.1	1.8e-65	95.12	hypothetical protein SDJN03_28753, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011696.1	1.8e-65	94.35	hypothetical protein SDJN02_26602, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022952797.1	3.6e-50	77.24	uncharacterized protein LOC111455388 [Cucurbita moschata]	[more]
XP_022972401.1	3.1e-49	78.45	uncharacterized protein LOC111470968 [Cucurbita maxima]	[more]
KAG7011694.1	9.9e-48	76.52	hypothetical protein SDJN02_26600, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh19G006670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49330.1	2.6e-30	40.50	hydroxyproline-rich glycoprotein family protein	[more]
AT2G16190.1	2.2e-21	38.94	BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein fam...	[more]
AT2G16190.2	2.2e-21	38.94	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34272	EXPRESSED PROTEIN	coord: 8..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G006670.1	CmoCh19G006670.1	mRNA