CmoCh19G006340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G006340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr19: 6893256 .. 6893979 (-)
RNA-Seq ExpressionCmoCh19G006340
SyntenyCmoCh19G006340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTTCCCAAAGCTTTACAAGTTCTTCTATCACCTTGTTGTTCTTATATCTTGCTGCTTTATTGTGGGGTTTACATGCATTCATTCGTCACCAGGAATATGATATAGTCTGTCTAAGATTTGCTCCATCCATGTATATGCTTGGTTCTCTGAAACTATGAGAATCATTTGAGGGAAGAAAATCCATGGTCAATCAATTTGCAGGCATGAAACGATCTTGCTTTTTCGATTGAGCAGAATCGTGTACTGTCGAAAGCACATGGACGTGAAGAAATCTCCCTAGTATCGGCTATGGCGGTAACTTCTGTTCAGAAACCAAGGGCTTATACAAGGTGAAACAGCAGTTAAAAGAGGAAAAACAGAAGAAGCTGCTTATACATATTGATTGACAATTAATTCAGCCCTTGCCTGGTTTTTCTTTGTATTCACAGGATAAGTGAGAGCATGAAATCCATCACAAAAGGACTTCAACTGGTTTGTGCCGACTTGTTATATACAGTAATGTTAGTCATCAACCAACCCCATGTTTTATATTCTGCATTTTCATTTCTGTAACATTCAAACTCCTTGCCTTGAATCTTAAGGCTTTGCATTTGTGTTGTAATTTTCAAGTTCATTCATACTAATCCTCATTCAGGTAGCAATGGTTGATCAAGTACTTGAGATTAAGCTGTGAATTCGTATCTTTATAGCTCTACTCTCAGTTGATGTGAATATCTAT

mRNA sequence

ATGGAACTTCCCAAAGCTTTACAAGTTCTTCTATCACCTTGTTGTTCTTATATCTTGCTGCTTTATTGTGGGAATCGTGTACTGTCGAAAGCACATGGACGTGAAGAAATCTCCCTAGTATCGGCTATGGCGGTAACTTCTGTTCAGAAACCAAGGGCTTATACAAGGATAAGTGAGAGCATGAAATCCATCACAAAAGGACTTCAACTGGTTTGTGCCGACTTGTTATATACAGTAATGTTAGTCATCAACCAACCCCATGTTTTATATTCTGCATTTTCATTTCTGTAACATTCAAACTCCTTGCCTTGAATCTTAAGGCTTTGCATTTGTGTTGTAATTTTCAAGTTCATTCATACTAATCCTCATTCAGGTAGCAATGGTTGATCAAGTACTTGAGATTAAGCTGTGAATTCGTATCTTTATAGCTCTACTCTCAGTTGATGTGAATATCTAT

Coding sequence (CDS)

ATGGAACTTCCCAAAGCTTTACAAGTTCTTCTATCACCTTGTTGTTCTTATATCTTGCTGCTTTATTGTGGGAATCGTGTACTGTCGAAAGCACATGGACGTGAAGAAATCTCCCTAGTATCGGCTATGGCGGTAACTTCTGTTCAGAAACCAAGGGCTTATACAAGGATAAGTGAGAGCATGAAATCCATCACAAAAGGACTTCAACTGGTTTGTGCCGACTTGTTATATACAGTAATGTTAGTCATCAACCAACCCCATGTTTTATATTCTGCATTTTCATTTCTGTAA

Protein sequence

MELPKALQVLLSPCCSYILLLYCGNRVLSKAHGREEISLVSAMAVTSVQKPRAYTRISESMKSITKGLQLVCADLLYTVMLVINQPHVLYSAFSFL
Homology
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BLAST of CmoCh19G006340 vs. NCBI nr
Match: KAG7011665.1 (hypothetical protein SDJN02_26571, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-08
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 43 MAVTSVQKPRAYTRISESMKSITKGLQLVCADLLYTVMLV 83
          MAV SVQKPRAYTRI ESMKSITKGLQLVCADLLYTV +V
Sbjct: 1  MAVPSVQKPRAYTRIIESMKSITKGLQLVCADLLYTVAMV 40

The following BLAST results are available for this feature:
BLAST of CmoCh19G006340 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh19G006340 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh19G006340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011665.14.5e-0890.00hypothetical protein SDJN02_26571, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh19G006340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G006340.1CmoCh19G006340.1mRNA