CmoCh19G006190 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G006190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cold regulated protein 27, putative isoform 2
Location	Cmo_Chr19: 6793342 .. 6796662 (+)
RNA-Seq Expression	CmoCh19G006190
Synteny	CmoCh19G006190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGTATCTGCACGAGCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTTCGCCCACGATTTCCATTTTTTCTTTGATTTGATTTTCTATATTTGGCTGTTCCGAACGATTTCGCTTTGTCTTTGATCTCCCGGAATGGTAGACGCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGCAGATCGAGAATCACCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTAAATTGTGACTCTATCTCTTTTGTTTTTGCTGTTTCTTGGAAGTATGATTTTGAGTTTTTCCTTGGTATGAACGAGTTTTTTGCGGACTGTGCTTTGTTTTTCTGCTTTGAACGTAGCGCCTGGAGTTCGTGTGACCTAGTTTTTGTGCTCTCGAAACTAATATCCTTGGTTACGAGTGATTCTTTTTCTCTTGGTGGTGTCTTTAGAAATTTTTAATGGTAGAGTGGTTTTGGGCACCTCCCATTTGAATGTTTAGTGTTAGGGCATATTCAAGTTAAATCGTGGATGAATTTCGAGTTAAGTCTTTGTGATTCAATTTTGTTTTTTTGTTTTTAAAAGAAAACATTTTACTCTTTGAATTCCCCTTGTTTTAGTTGTTATTTTCTCTTGTAGGACACTCATTTTATTTGTATCAAATGTTTTAGCTCTAAGTTTTAACTCATATTAAGGAACAATTTGAAAATTTCACGTGAAACATGAGGAATGGTTTTACTAATTGTTTTACTAATTGGAAATTTCAGGTGCAAACACATTGGACAGAAGAGAAACACAGATTATTTCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTGTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGGTGAGGCAATACATCCACAGCAAGAGTGGGAGTGAGTTCCCTATATCATTCCTCTACGTCCTTAATGATTTCCTCTTGTTTTATTTCTTTTCTTAGTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACGTTGGGAGAACTGATCCTTTATTGGATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGTGTACTCTGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCCGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTACAGGTACCCGAACACATTGTTCATGTTTTCCAAACCCTTTTCCAGAGTCTCACTTTTCGTTGATTCTACCGTCTAATATACTTAAAATTTGTAATCTATTCCCTTATTATGCATGTACACTATTGATGATGATCGGCCATATGCTTCATACTTTGTTGTTGTGATCTTCCAATCATATTTCGTAATGTTGAAGGTGTTTGCAATAATTATACTAGTAGTAGTATTGACTTAAGCACCATTTAGATGCACTATTTTTCTGATTTAAGTTTGTGTTGGTTTACCAATATGACCATTACTTTGTGATGTTACCATTAGTTGCCACATTGACTGCACCACTTGAAGTCCTGCAAACGTTTTTGCTTGAATTTTGTGTTCATCAAATGTGTTTCCTATGAGAGGGTTTCTGAAATACGACTTAGTGCATCCGAGTTGTAAAATTTGTACGTCAAGCTTAGGATATTATGTTATCTTCCTAGCAATAGAAAATCTATATGTTCTTAATCGGATAGTTTCAATTTGGTTTTCAGTGTTTTGGTAACTTTGTTCCCTTAGCTTGATTTATAGTGTTTACACCTGGGTCACAAGATTTAACGTCACAGTTCTTCATTCTATGTTACAATTAAGAACTCACGGGCAAACTGATTGCGTATCTTATCAATTTGAAGTTGTTTGATGTATATTTATGCTTGAAGAAGTAGAAGTCCTTTATGTAAAGTTGGATGAACATTGTTGTACGGGAAAAAAAAAGAGAATAAAACCGAGTAGAAATTACTAGGATGGACAGCATTCTGATTATTGATGAACCTCTAGATGAAGCCAGGCTAATGTAGACTAATTCTAGGACAGTAGCTGTTTAGGGATGAATCAAAGCAGAAATTCTTGGGTTCATAACATTTCAGTCAAATTAGAGCATCCATGTTAAGGAATTTGCCTTCTTTTATGAATGTTTAATGCTTGATGTGATTTTTCTGTTTTCATACTAACTTAGTGTCTATTATCTCTTCATTGCAGAAGTTTCAGATCAAAACTTTGTGGATACTCATCCAGGAGAGTTGTCTGATGGCACGCCCATTACAAAACGATTAAAGAAAGCTTCCTCTGATTCTTCAGGCAACAACCGGGTAAAACTCGGGATTGCCATTGATTTCTCTTTGGAGAACCAATAATTGCATTTTACAAATGATCCAAGACCGAATATGCTGCTATTTCATCTCTTAGGTTGCACCATATAAAAGATTATCATCAGAAAGATAAAAGCCAGATGCAAAAACTTTGTGCCTCCAAATTCAGATTTGTGTTACAGTGCAAGAGGGAGCTGACAACAACTCATTCCAACATGTGAAGACACCCGGCTGTTCAAGTTCGTTATCCGAACGCAACACGATTCTGTTTTCCTTCCGAAAGAGCATCGAAAAGTAAATAAGGGAAGTGACAACAATAATTCTACCAGAAGATCTACGGCTGGAAGGAGAAAATACGTTTGTTTATGGTACAAACTAAACTTTTTCTTAGTTCATCAAATATAGAGTGAAAATATATGTTAACCCTTTCATTTCTCCTGCTTTTTTTCTTCTTAGAGTTTGAAGAAATGGAAATTCCAATAGATTTAGGGTATGAATATACATGATATAGAGAAAGCTAGACACCGACCCTGATACTGATATAGATATACACACCCTTTTACATCTGTTTTGAAATACTCTCATTTTGAAGTTCAGGTAGAGACCTCAAATGTAAATTACTATTACATAAAACAATAGATTTGAACAGACTTATTGATTCTCTTTAGGTGGAGCCTTTCTTTTGCTTATGGAGTATGTTGATGGCTAAGTGCTTTCTTGACTAATTGCGTTGTTCGAATGGTTATCAAACGGGACTTAAGCTATTATATCTTTGCTTGCTTTGTTACGATC

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGTATCTGCACGAGCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTTCGCCCACGATTTCCATTTTTTCTTTGATTTGATTTTCTATATTTGGCTGTTCCGAACGATTTCGCTTTGTCTTTGATCTCCCGGAATGGTAGACGCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGCAGATCGAGAATCACCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTGCAAACACATTGGACAGAAGAGAAACACAGATTATTTCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTGTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACGTTGGGAGAACTGATCCTTTATTGGATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGTGTACTCTGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCCGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTACAGAAGTTTCAGATCAAAACTTTGTGGATACTCATCCAGGAGAGTTGTCTGATGGCACGCCCATTACAAAACGATTAAAGAAAGCTTCCTCTGATTCTTCAGGCAACAACCGGGTAAAACTCGGGATTGCCATTGATTTCTCTTTGGAGAACCAATAATTGCATTTTACAAATGATCCAAGACCGAATATGCTGCTATTTCATCTCTTAGGTTGCACCATATAAAAGATTATCATCAGAAAGATAAAAGCCAGATGCAAAAACTTTGTGCCTCCAAATTCAGATTTGTGTTACAGTGCAAGAGGGAGCTGACAACAACTCATTCCAACATGTGAAGACACCCGGCTGTTCAAGTTCGTTATCCGAACGCAACACGATTCTGTTTTCCTTCCGAAAGAGCATCGAAAAGTAAATAAGGGAAGTGACAACAATAATTCTACCAGAAGATCTACGGCTGGAAGGAGAAAATACGTTTGTTTATGGTACAAACTAAACTTTTTCTTAGTTCATCAAATATAGAGTGAAAATATATGTTAACCCTTTCATTTCTCCTGCTTTTTTTCTTCTTAGAGTTTGAAGAAATGGAAATTCCAATAGATTTAGGGTATGAATATACATGATATAGAGAAAGCTAGACACCGACCCTGATACTGATATAGATATACACACCCTTTTACATCTGTTTTGAAATACTCTCATTTTGAAGTTCAGGTAGAGACCTCAAATGTAAATTACTATTACATAAAACAATAGATTTGAACAGACTTATTGATTCTCTTTAGGTGGAGCCTTTCTTTTGCTTATGGAGTATGTTGATGGCTAAGTGCTTTCTTGACTAATTGCGTTGTTCGAATGGTTATCAAACGGGACTTAAGCTATTATATCTTTGCTTGCTTTGTTACGATC

Coding sequence (CDS)

ATGGTAGACGCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGCAGATCGAGAATCACCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTGCAAACACATTGGACAGAAGAGAAACACAGATTATTTCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTGTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACGTTGGGAGAACTGATCCTTTATTGGATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGTGTACTCTGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCCGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTACAGAAGTTTCAGATCAAAACTTTGTGGATACTCATCCAGGAGAGTTGTCTGATGGCACGCCCATTACAAAACGATTAAAGAAAGCTTCCTCTGATTCTTCAGGCAACAACCGGGTAAAACTCGGGATTGCCATTGATTTCTCTTTGGAGAACCAATAA

Protein sequence

MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSDSSGNNRVKLGIAIDFSLENQ

Homology

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BLAST of CmoCh19G006190 vs. ExPASy Swiss-Prot
Match: Q8L8T7 (Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-08
Identity = 65/203 (32.02%), Postives = 91/203 (44.83%), Query Frame = 0


Query: 30  RLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLFLDSLEASFVQDLHR 89
           R + +S  SS+   + EG+     S +    + ++T WT EKH L+L S+EASFV  L  
Sbjct: 13  RFSDDSDDSSDDASSVEGE--TTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQL-- 72

Query: 90  YRHLRALSSKQKMR--------RKPIMPNISSSESMVLQDASWQKANVGRTDPLLD--KT 149
           Y  L AL   + +         RKP     S  +  VL D  WQK NV + +  ++    
Sbjct: 73  YNSLGALGKNENVSESTRFGSGRKP-----SQEQFKVLHDGFWQKINVKQPEHRINGRHG 132

Query: 150 ADSPAILEDVWINHF-PSAGNQCTLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIP 209
            +S   L   WI H+ P    Q  +  TD  E        S+ +    S  SA S +Q+ 
Sbjct: 133 GNSHEFLRSPWIKHYKPLVKTQ--IPVTD--EPENQVVSSSNGKKGICSSGSASSLKQLS 192

Query: 210 PCCRDSHTI---VTEVSDQNFVD 219
              RD   I     EVSDQNFV+
Sbjct: 193 SHSRDHDQISVGEAEVSDQNFVN 202

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BLAST of CmoCh19G006190 vs. ExPASy TrEMBL
Match: A0A6J1GKR5 (uncharacterized protein LOC111454842 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454842 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 8.2e-143
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120
           DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ
Sbjct: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120

Query: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180
           DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH
Sbjct: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180

Query: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240
           IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD
Sbjct: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240

Query: 241 SSGNNRVKLGIAIDFSLENQ 261
           SSGNNRVKLGIAIDFSLENQ
Sbjct: 241 SSGNNRVKLGIAIDFSLENQ 260

[Close]

BLAST of CmoCh19G006190 vs. ExPASy TrEMBL
Match: A0A6J1GJA3 (uncharacterized protein LOC111454842 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454842 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 1.7e-135
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120
           DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ
Sbjct: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120

Query: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180
           DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH
Sbjct: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180

Query: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240
           IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD
Sbjct: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240

Query: 241 SSGNNRV 248
           SSGNNRV
Sbjct: 241 SSGNNRV 247

[Close]

BLAST of CmoCh19G006190 vs. ExPASy TrEMBL
Match: A0A6J1I4M4 (uncharacterized protein LOC111470946 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470946 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 7.7e-133
Identity = 245/260 (94.23%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMSPPVADRES MSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSPPVADRESSMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120
           DAVQTHWT+EKHRLFLD+LEASFVQDLHRYRHLRA SSKQKMRRKPIMPNISSSESMVLQ
Sbjct: 61  DAVQTHWTDEKHRLFLDALEASFVQDLHRYRHLRAFSSKQKMRRKPIMPNISSSESMVLQ 120

Query: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180
           DASWQKAN+GRTDPLL KTADSPAILEDVWINHFPSAGNQ T ETTDVLEECGSCSDRSH
Sbjct: 121 DASWQKANIGRTDPLLHKTADSPAILEDVWINHFPSAGNQRTPETTDVLEECGSCSDRSH 180

Query: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240
           IRNKTNS QSARSSQQIPPCCRDSHTIV EVSDQNFVDTHPGELS GTPITKRLKKASSD
Sbjct: 181 IRNKTNSCQSARSSQQIPPCCRDSHTIVAEVSDQNFVDTHPGELSGGTPITKRLKKASSD 240

Query: 241 SSGNNRVKLGIAIDFSLENQ 261
           S GN+RVKLGIA D SLENQ
Sbjct: 241 SLGNDRVKLGIAFDLSLENQ 260

[Close]

BLAST of CmoCh19G006190 vs. ExPASy TrEMBL
Match: A0A6J1I9R8 (uncharacterized protein LOC111470946 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470946 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.1e-126
Identity = 234/247 (94.74%), Postives = 238/247 (96.36%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMSPPVADRES MSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSPPVADRESSMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120
           DAVQTHWT+EKHRLFLD+LEASFVQDLHRYRHLRA SSKQKMRRKPIMPNISSSESMVLQ
Sbjct: 61  DAVQTHWTDEKHRLFLDALEASFVQDLHRYRHLRAFSSKQKMRRKPIMPNISSSESMVLQ 120

Query: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180
           DASWQKAN+GRTDPLL KTADSPAILEDVWINHFPSAGNQ T ETTDVLEECGSCSDRSH
Sbjct: 121 DASWQKANIGRTDPLLHKTADSPAILEDVWINHFPSAGNQRTPETTDVLEECGSCSDRSH 180

Query: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240
           IRNKTNS QSARSSQQIPPCCRDSHTIV EVSDQNFVDTHPGELS GTPITKRLKKASSD
Sbjct: 181 IRNKTNSCQSARSSQQIPPCCRDSHTIVAEVSDQNFVDTHPGELSGGTPITKRLKKASSD 240

Query: 241 SSGNNRV 248
           S GN+RV
Sbjct: 241 SLGNDRV 247

[Close]

BLAST of CmoCh19G006190 vs. ExPASy TrEMBL
Match: A0A6J1GJF7 (uncharacterized protein LOC111454842 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111454842 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.7e-111
Identity = 221/260 (85.00%), Postives = 221/260 (85.00%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120
           DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSE  V Q
Sbjct: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSE--VRQ 120

Query: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180
                                           H  S  NQCTLETTDVLEECGSCSDRSH
Sbjct: 121 ------------------------------YIHSKSGRNQCTLETTDVLEECGSCSDRSH 180

Query: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240
           IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD
Sbjct: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 228

Query: 241 SSGNNRVKLGIAIDFSLENQ 261
           SSGNNRVKLGIAIDFSLENQ
Sbjct: 241 SSGNNRVKLGIAIDFSLENQ 228

[Close]

BLAST of CmoCh19G006190 vs. NCBI nr
Match: XP_022952080.1 (uncharacterized protein LOC111454842 isoform X1 [Cucurbita moschata])

HSP 1 Score: 516.2 bits (1328), Expect = 1.7e-142
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120
           DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ
Sbjct: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120

Query: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180
           DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH
Sbjct: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180

Query: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240
           IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD
Sbjct: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240

Query: 241 SSGNNRVKLGIAIDFSLENQ 261
           SSGNNRVKLGIAIDFSLENQ
Sbjct: 241 SSGNNRVKLGIAIDFSLENQ 260

[Close]

BLAST of CmoCh19G006190 vs. NCBI nr
Match: KAG7011651.1 (hypothetical protein SDJN02_26557 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 501.5 bits (1290), Expect = 4.3e-138
Identity = 259/279 (92.83%), Postives = 259/279 (92.83%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMS PVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSTPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSE----- 120
           DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSE     
Sbjct: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSEVRQYI 120

Query: 121 --------------SMVLQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQC 180
                         SMVLQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQC
Sbjct: 121 HSKSGSEFPISFLYSMVLQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQC 180

Query: 181 TLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHP 240
           TLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHP
Sbjct: 181 TLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHP 240

Query: 241 GELSDGTPITKRLKKASSDSSGNNRVKLGIAIDFSLENQ 261
           GELSDGTPITKRLKKASSDSSGNNRVKLGIAIDFSLENQ
Sbjct: 241 GELSDGTPITKRLKKASSDSSGNNRVKLGIAIDFSLENQ 279

[Close]

BLAST of CmoCh19G006190 vs. NCBI nr
Match: XP_022952081.1 (uncharacterized protein LOC111454842 isoform X2 [Cucurbita moschata])

HSP 1 Score: 491.9 bits (1265), Expect = 3.4e-135
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120
           DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ
Sbjct: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120

Query: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180
           DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH
Sbjct: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180

Query: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240
           IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD
Sbjct: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240

Query: 241 SSGNNRV 248
           SSGNNRV
Sbjct: 241 SSGNNRV 247

[Close]

BLAST of CmoCh19G006190 vs. NCBI nr
Match: XP_023553838.1 (uncharacterized protein LOC111811294 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 244/260 (93.85%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120
           DAVQTHWT+EKHRLFLDSLEASFVQDLHRYRHLRA SSKQK+RRK IMPNISSSES+VLQ
Sbjct: 61  DAVQTHWTDEKHRLFLDSLEASFVQDLHRYRHLRAFSSKQKVRRKLIMPNISSSESLVLQ 120

Query: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180
           DASWQKAN+GRTDPLL KTADSPAILEDVWINHFPSAG  CTLETTDVLEECGSCSDR H
Sbjct: 121 DASWQKANIGRTDPLLHKTADSPAILEDVWINHFPSAGKPCTLETTDVLEECGSCSDRRH 180

Query: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240
           IRNKTNS QSARSSQQIP CCRDSHTI TEVSDQNFVDTHPGELSDGTPITKRLKKASSD
Sbjct: 181 IRNKTNSCQSARSSQQIPSCCRDSHTIFTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240

Query: 241 SSGNNRVKLGIAIDFSLENQ 261
           SSGN+RVKLGIA D SLENQ
Sbjct: 241 SSGNDRVKLGIAFDLSLENQ 260

[Close]

BLAST of CmoCh19G006190 vs. NCBI nr
Match: XP_022972372.1 (uncharacterized protein LOC111470946 isoform X1 [Cucurbita maxima])

HSP 1 Score: 483.0 bits (1242), Expect = 1.6e-132
Identity = 245/260 (94.23%), Postives = 249/260 (95.77%), Query Frame = 0


Query: 1   MVDAHTPSSMSPPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60
           MVDAHTPSSMSPPVADRES MSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL
Sbjct: 1   MVDAHTPSSMSPPVADRESSMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 60

Query: 61  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 120
           DAVQTHWT+EKHRLFLD+LEASFVQDLHRYRHLRA SSKQKMRRKPIMPNISSSESMVLQ
Sbjct: 61  DAVQTHWTDEKHRLFLDALEASFVQDLHRYRHLRAFSSKQKMRRKPIMPNISSSESMVLQ 120

Query: 121 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 180
           DASWQKAN+GRTDPLL KTADSPAILEDVWINHFPSAGNQ T ETTDVLEECGSCSDRSH
Sbjct: 121 DASWQKANIGRTDPLLHKTADSPAILEDVWINHFPSAGNQRTPETTDVLEECGSCSDRSH 180

Query: 181 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 240
           IRNKTNS QSARSSQQIPPCCRDSHTIV EVSDQNFVDTHPGELS GTPITKRLKKASSD
Sbjct: 181 IRNKTNSCQSARSSQQIPPCCRDSHTIVAEVSDQNFVDTHPGELSGGTPITKRLKKASSD 240

Query: 241 SSGNNRVKLGIAIDFSLENQ 261
           S GN+RVKLGIA D SLENQ
Sbjct: 241 SLGNDRVKLGIAFDLSLENQ 260

[Close]

BLAST of CmoCh19G006190 vs. TAIR 10
Match: AT5G42900.3 (cold regulated gene 27 )

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09
Identity = 65/202 (32.18%), Postives = 91/202 (45.05%), Query Frame = 0


Query: 30  RLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLFLDSLEASFVQDLHR 89
           R + +S  SS+   + EG+     S +    + ++T WT EKH L+L S+EASFV  L  
Sbjct: 13  RFSDDSDDSSDDASSVEGE--TTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQL-- 72

Query: 90  YRHLRALSSKQKMR--------RKPIMPNISSSESMVLQDASWQKANVGRTDPLLD--KT 149
           Y  L AL   + +         RKP     S  +  VL D  WQK NV + +  ++    
Sbjct: 73  YNSLGALGKNENVSESTRFGSGRKP-----SQEQFKVLHDGFWQKINVKQPEHRINGRHG 132

Query: 150 ADSPAILEDVWINHF-PSAGNQCTLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIP 209
            +S   L   WI H+ P    Q  +  TD  E        S+ +    S  SA S +Q+ 
Sbjct: 133 GNSHEFLRSPWIKHYKPLVKTQ--IPVTD--EPENQVVSSSNGKKGICSSGSASSLKQLS 192

Query: 210 PCCRDSHTIVT--EVSDQNFVD 219
              RD   I    EVSDQNFV+
Sbjct: 193 SHSRDHDQISVGEEVSDQNFVN 201

[Close]

BLAST of CmoCh19G006190 vs. TAIR 10
Match: AT5G42900.1 (cold regulated gene 27 )

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 65/203 (32.02%), Postives = 91/203 (44.83%), Query Frame = 0


Query: 30  RLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLFLDSLEASFVQDLHR 89
           R + +S  SS+   + EG+     S +    + ++T WT EKH L+L S+EASFV  L  
Sbjct: 13  RFSDDSDDSSDDASSVEGE--TTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQL-- 72

Query: 90  YRHLRALSSKQKMR--------RKPIMPNISSSESMVLQDASWQKANVGRTDPLLD--KT 149
           Y  L AL   + +         RKP     S  +  VL D  WQK NV + +  ++    
Sbjct: 73  YNSLGALGKNENVSESTRFGSGRKP-----SQEQFKVLHDGFWQKINVKQPEHRINGRHG 132

Query: 150 ADSPAILEDVWINHF-PSAGNQCTLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIP 209
            +S   L   WI H+ P    Q  +  TD  E        S+ +    S  SA S +Q+ 
Sbjct: 133 GNSHEFLRSPWIKHYKPLVKTQ--IPVTD--EPENQVVSSSNGKKGICSSGSASSLKQLS 192

Query: 210 PCCRDSHTI---VTEVSDQNFVD 219
              RD   I     EVSDQNFV+
Sbjct: 193 SHSRDHDQISVGEAEVSDQNFVN 202

[Close]

BLAST of CmoCh19G006190 vs. TAIR 10
Match: AT5G42900.2 (cold regulated gene 27 )

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 65/203 (32.02%), Postives = 91/203 (44.83%), Query Frame = 0


Query: 30  RLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLFLDSLEASFVQDLHR 89
           R + +S  SS+   + EG+     S +    + ++T WT EKH L+L S+EASFV  L  
Sbjct: 13  RFSDDSDDSSDDASSVEGE--TTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQL-- 72

Query: 90  YRHLRALSSKQKMR--------RKPIMPNISSSESMVLQDASWQKANVGRTDPLLD--KT 149
           Y  L AL   + +         RKP     S  +  VL D  WQK NV + +  ++    
Sbjct: 73  YNSLGALGKNENVSESTRFGSGRKP-----SQEQFKVLHDGFWQKINVKQPEHRINGRHG 132

Query: 150 ADSPAILEDVWINHF-PSAGNQCTLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIP 209
            +S   L   WI H+ P    Q  +  TD  E        S+ +    S  SA S +Q+ 
Sbjct: 133 GNSHEFLRSPWIKHYKPLVKTQ--IPVTD--EPENQVVSSSNGKKGICSSGSASSLKQLS 192

Query: 210 PCCRDSHTI---VTEVSDQNFVD 219
              RD   I     EVSDQNFV+
Sbjct: 193 SHSRDHDQISVGEAEVSDQNFVN 202

[Close]

BLAST of CmoCh19G006190 vs. TAIR 10
Match: AT4G33980.1 (BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-04
Identity = 38/128 (29.69%), Postives = 60/128 (46.88%), Query Frame = 0


Query: 16  DRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLF 75
           DR+   + + S      S S  S  T + S  D          +LD   T WT EKH  +
Sbjct: 15  DRDVSEASAESQSESTLSNSLDSGVTAETSRSDAD-------SKLDEC-TAWTNEKHNSY 74

Query: 76  LDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNI--SSSESMVLQDASWQKANVGRTD 135
           LD LE+SFV+ L+    L    +++  R + +  N   S+ +  VLQ+  WQK N G+  
Sbjct: 75  LDYLESSFVRQLY---SLLGGGTQRLSRTRDVQSNSHKSADQFTVLQNGCWQKVNFGKKQ 131

Query: 136 PLLDKTAD 142
             L+ +++
Sbjct: 135 SCLETSSE 131

[Close]

BLAST of CmoCh19G006190 vs. TAIR 10
Match: AT4G33980.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3). )

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-04
Identity = 38/128 (29.69%), Postives = 60/128 (46.88%), Query Frame = 0


Query: 16  DRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLF 75
           DR+   + + S      S S  S  T + S  D          +LD   T WT EKH  +
Sbjct: 15  DRDVSEASAESQSESTLSNSLDSGVTAETSRSDAD-------SKLDEC-TAWTNEKHNSY 74

Query: 76  LDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNI--SSSESMVLQDASWQKANVGRTD 135
           LD LE+SFV+ L+    L    +++  R + +  N   S+ +  VLQ+  WQK N G+  
Sbjct: 75  LDYLESSFVRQLY---SLLGGGTQRLSRTRDVQSNSHKSADQFTVLQNGCWQKVNFGKKQ 131

Query: 136 PLLDKTAD 142
             L+ +++
Sbjct: 135 SCLETSSE 131

The following BLAST results are available for this feature:

BLAST of CmoCh19G006190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8T7	2.0e-08	32.02	Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1	[more]

BLAST of CmoCh19G006190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKR5	8.2e-143	100.00	uncharacterized protein LOC111454842 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GJA3	1.7e-135	100.00	uncharacterized protein LOC111454842 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I4M4	7.7e-133	94.23	uncharacterized protein LOC111470946 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1I9R8	1.1e-126	94.74	uncharacterized protein LOC111470946 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GJF7	3.7e-111	85.00	uncharacterized protein LOC111454842 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmoCh19G006190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952080.1	1.7e-142	100.00	uncharacterized protein LOC111454842 isoform X1 [Cucurbita moschata]	[more]
KAG7011651.1	4.3e-138	92.83	hypothetical protein SDJN02_26557 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022952081.1	3.4e-135	100.00	uncharacterized protein LOC111454842 isoform X2 [Cucurbita moschata]	[more]
XP_023553838.1	1.2e-132	93.85	uncharacterized protein LOC111811294 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022972372.1	1.6e-132	94.23	uncharacterized protein LOC111470946 isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh19G006190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42900.3	1.1e-09	32.18	cold regulated gene 27	[more]
AT5G42900.1	1.4e-09	32.02	cold regulated gene 27	[more]
AT5G42900.2	1.4e-09	32.02	cold regulated gene 27	[more]
AT4G33980.1	1.0e-04	29.69	BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G429...	[more]
AT4G33980.2	1.0e-04	29.69	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOC...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..200
None	No IPR available	PANTHER	PTHR33676:SF17	REGULATED GENE 27, PUTATIVE ISOFORM 2-RELATED	coord: 21..247
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 21..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G006190.1	CmoCh19G006190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold