CmoCh19G004220 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G004220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr19: 5042813 .. 5044736 (+)
RNA-Seq ExpressionCmoCh19G004220
SyntenyCmoCh19G004220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTATTTCAACGTTGGGAACAATGCGGGTCACGAGCTTTTGGCCTTCCACGTTATTCCAAGCTTGGTAAAATTTCTCACATTCAACTGTTTATTTATTTATTGTGTACTCTTAAACTTTATCATTGGTCTAAAGTTGGTAATATTATCTTCGATATTTTATAAATATTTCAAAACTTTTTAAAAGAATTTTCTTGAGACTTAGAACAAGGTGTTTGAATTCCAGTTCTATTTGGGAGGGTATTTTTGTAATTTGCCCTTATTTATATTCTGGTTCACTCATTTCTTCAACAATTTTCTTCATTAAGTTGCAGTTTGGTGCCTTGTTGATTTCAGATTGTTTCATATCAATTTTATATAATAATTTCAATGGCAGTTTAGAGTTCTCTTTTCCAGAGCACAGTGGTCCTGCACTGTTGAAGTGTTGTAACAACCATATTTATATCTCCAAGGTACGGCGACTCAGATGGCATACTATTCAACATATTGATTACTGGTTTAGATCTATAGTATCAATGTTTTGACTAATTAAATTAAGTTCTATTTAAATTTAATTTCATCTCATTTGGAACCTGGTTCGTTCAGCCTATTTCGAAATTTTATTTGCCCTACTAATTAATAGCCTTTCTGTCCTTTTCTCTCTAATTAGCTGGATTCAGAGTGACCTACAAGTTTTTTCTTTTCCTTCTTTTTTTCTGTTTTTTATTCTTTTAGGTTAACATTCACTTTTTCCCCTTTTGTATCTTGAGTCTACAATTTAGTTGCCTTTTATTCTACTTCTTTGTTTATTTATTTGTTTTAGGTGATTTTGATGTGATTCCCCACTATTATTAACATTAGTACATTATCATGTTTTAAAATTATTTTGTGTTATTGATGCTATGCTTACGTTCCATCACTTCCTTCAGACTAGTCATATTTTATTTTATTAATTTCTTTGATTTTTTGTGGTAGATTGATATTAAAGTTATAAAAGTTTTAATTCCTCAAGGTTAGTATTTTATAAGTGAAGCTTAATTTTGAGTTAGAAATTAACTAAATGTTGAGCACTGGTATATGTGATAGACGAATCCAGCTAAATTGGTGGGCACCTTACTTCACTTTTTGTTTGAATTTTTGGAAAATTATCATGTGCAATTAATAACACATGACATACTGTAGATTACCATTATGTGTAATTAATGAAGAAAACCCATCATGTGTTAATAATCAATATCATTCTAGAAAAGGCTAGTTTTGATAGGGTAAATAAAATGGTCAGAAAAAATAGAGCCATTTGAATCTATAAAATGACCAAATTTTGTGGTATTGAGAGTGTTTGTAGGATAACGTTGTGCATAGTTAGTTTGCCAAAGCCACATAAGCTGTATAAGAAAAGAAAGAACCTCATGAATTGGTAGGTCGCATTATTGGTTTGTTAAGGAAAATGTGTGTGTGTAAATGAGACGAAACACGTGGGGTCATGTGCCATTTCCACTACATCTATATATATATACACATATATATCCATTAATCGATGTGGTGTGTTGGATATTGAATATAGATTCCAGCTGGTTTGCTCGTGGAGGTTCCGTTCTTCATTCTGCCATTGAAAAGACCCCACTCCAAGCAATTATGGACGACGTAAGTGCTCAAACTTTCTGCTTTTTATTTCATTTTTTATATTTAAATTTCTAATCTCAATTGATGCTAGATGTCTTCTCGATTCCTTGTGAAGTATTAAAAGTATAATTCAATTAATTGAGCAATATCTGTGTCTTATTTAAGATTTATTATAAATTTTAGAGTGAAATTATAAATGGAAAGTTACTTTTATCCTCTCTTTTAGTTTTGCTTGTATCATACCTTTGCTGAAGGATAATAGAGTGAGTGCTCAAAAGCTAGATATGCATGAGAAAGTGAGTGGAATCTGTATGTGGGTCTAG

mRNA sequence

CTTTATTTCAACGTTGGGAACAATGCGGGTCACGAGCTTTTGGCCTTCCACGTTATTCCAAGCTTGTTTAGAGTTCTCTTTTCCAGAGCACAGTGGTCCTGCACTGTTGAAGTGTTGTAACAACCATATTTATATCTCCAAGATTCCAGCTGGTTTGCTCGTGGAGGTTCCGTTCTTCATTCTGCCATTGAAAAGACCCCACTCCAAGCAATTATGGACGACTTTTGCTTGTATCATACCTTTGCTGAAGGATAATAGAGTGAGTGCTCAAAAGCTAGATATGCATGAGAAAGTGAGTGGAATCTGTATGTGGGTCTAG

Coding sequence (CDS)

ATGCGGGTCACGAGCTTTTGGCCTTCCACGTTATTCCAAGCTTGTTTAGAGTTCTCTTTTCCAGAGCACAGTGGTCCTGCACTGTTGAAGTGTTGTAACAACCATATTTATATCTCCAAGATTCCAGCTGGTTTGCTCGTGGAGGTTCCGTTCTTCATTCTGCCATTGAAAAGACCCCACTCCAAGCAATTATGGACGACTTTTGCTTGTATCATACCTTTGCTGAAGGATAATAGAGTGAGTGCTCAAAAGCTAGATATGCATGAGAAAGTGAGTGGAATCTGTATGTGGGTCTAG

Protein sequence

MRVTSFWPSTLFQACLEFSFPEHSGPALLKCCNNHIYISKIPAGLLVEVPFFILPLKRPHSKQLWTTFACIIPLLKDNRVSAQKLDMHEKVSGICMWV
Homology
[Close]
BLAST of CmoCh19G004220 vs. ExPASy TrEMBL
Match: A0A6J1GL78 (uncharacterized protein LOC111454975 OS=Cucurbita moschata OX=3662 GN=LOC111454975 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.5e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MRVTSFWPSTLFQACLEFSFPEHSGPALLKCCNNHIYISKIPAGLLVEVPFFILPLKRPH 60
           MRVTSFWPSTLFQACLEFSFPEHSGPALLKCCNNHIYISKIPAGLLVEVPFFILPLKRPH
Sbjct: 18  MRVTSFWPSTLFQACLEFSFPEHSGPALLKCCNNHIYISKIPAGLLVEVPFFILPLKRPH 77

Query: 61  SKQLWTTFACIIPLLKDNRVSAQKLDMHEKVSGICMWV 99
           SKQLWTTFACIIPLLKDNRVSAQKLDMHEKVSGICMWV
Sbjct: 78  SKQLWTTFACIIPLLKDNRVSAQKLDMHEKVSGICMWV 115

[Close]
BLAST of CmoCh19G004220 vs. NCBI nr
Match: XP_022952240.1 (uncharacterized protein LOC111454975 [Cucurbita moschata])

HSP 1 Score: 214.2 bits (544), Expect = 5.2e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1   MRVTSFWPSTLFQACLEFSFPEHSGPALLKCCNNHIYISKIPAGLLVEVPFFILPLKRPH 60
           MRVTSFWPSTLFQACLEFSFPEHSGPALLKCCNNHIYISKIPAGLLVEVPFFILPLKRPH
Sbjct: 18  MRVTSFWPSTLFQACLEFSFPEHSGPALLKCCNNHIYISKIPAGLLVEVPFFILPLKRPH 77

Query: 61  SKQLWTTFACIIPLLKDNRVSAQKLDMHEKVSGICMWV 99
           SKQLWTTFACIIPLLKDNRVSAQKLDMHEKVSGICMWV
Sbjct: 78  SKQLWTTFACIIPLLKDNRVSAQKLDMHEKVSGICMWV 115

[Close]
BLAST of CmoCh19G004220 vs. NCBI nr
Match: XP_023554197.1 (uncharacterized protein LOC111811536 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 4.1e-49
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1   MRVTSFWPSTLFQACLEFSFPEHSGPALLKCCNNHIYISKIPAGLLVEVPFFILPLKRPH 60
           MRVTSFWPSTLFQACLEFSFPEHSGPALLKC NNHIYISKIPAGLLVEVPFFILPLKRPH
Sbjct: 18  MRVTSFWPSTLFQACLEFSFPEHSGPALLKCGNNHIYISKIPAGLLVEVPFFILPLKRPH 77

Query: 61  SKQLWTTFACIIPLLKDNRVSAQKLDMHEKVSGICMWV 99
           SKQLWTTFACI PLLKDN+VSAQKLDMHEKVSGICMW+
Sbjct: 78  SKQLWTTFACIRPLLKDNKVSAQKLDMHEKVSGICMWL 115

The following BLAST results are available for this feature:
BLAST of CmoCh19G004220 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh19G004220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GL782.5e-52100.00uncharacterized protein LOC111454975 OS=Cucurbita moschata OX=3662 GN=LOC1114549... [more]
BLAST of CmoCh19G004220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952240.15.2e-52100.00uncharacterized protein LOC111454975 [Cucurbita moschata][more]
XP_023554197.14.1e-4995.92uncharacterized protein LOC111811536 [Cucurbita pepo subsp. pepo][more]
BLAST of CmoCh19G004220 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..15
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G004220.1CmoCh19G004220.1mRNA