CmoCh19G004130 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G004130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RGG repeats nuclear RNA binding protein A-like
Location	Cmo_Chr19: 4830235 .. 4832939 (-)
RNA-Seq Expression	CmoCh19G004130
Synteny	CmoCh19G004130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTATTCCAGCCTCATCTTTGCGGCGTGGCTAGGGTTTTCTTTTTACCCAATTGCTCAATTTCTGATTTTCACACTCATTTCCTCTCACTCCGTTTCCATACCTCAAATTACTTTCCAAATTTGTATTGCTATCTTCAATCGGCTGTTCTTTATGGATTGTAATAATTTCTGAAGAATTTTCGTTCAGTGAGTTGATTTTCACTTTGCAGTTGGTCGTCTGCGTGTGAGTTGCAGTTCTAGATTGAACGGATATGGCAACCATGAATCCTTTTGATCTCCTCGTCGACGATGACAACGAGGACCCTAATCAGCTCGTTTCTGCACAGCGGTCCGCTCCGGCTGTCCCGTCCAAGAAGGCTCCTGCTCTGGCTCAGCCTGCAAAACCGGCTAACCTTCCTTCCAAGCCGCTCCCTCCTGCTCAGGCTGGTGGGTTTTGTTTTTTACTCTTGATTGTTTGTCTGGTTTTCCTGTTTTGTAATTTGTTTGGATGTGAAGTGGAAACGATGAACTTTTCAATCCGTTCGCCTGTTGCTTTTCAATTGAAATGATATTTGCCGTTTTATGGACTTTCTGTAACAAGTTCTTGTCGGTTGGTTTATTTTGCAATGCTGTATTACTGCTTTGCTGGATGTATTGTGAAGATCCTCTGTAGTTTTGTTGCTTGTTATTTGTTCTTTTTTGAATTGAACTGATTGTATATGTCATGGTATTTTTCAAGCTCTTCGATTGATTGACAAGGCTGAGTTTTGTTCTAGTAATTGTAATTGGAAGATTAGTGTATTCATAATGATTTTTTTCGGTTTTATGACATTATCTGTATTGTCAATGATTCAAAAAAATCAGTATTTCTTATTATCCATCCTTAAACTGAGCAAGTTTTAACAAGGGATTGAATTTTGAAAAAACAGTTAGCTTGAGATTTGTCAATCAATTATTTTAGAATATTTCATATGATCGAATGCCATAGATAATTGCTGTTCCTTTTTGTTGGTGAAAAGTTGAAAGTTATAGTACTGTTTTTATGAGTGCTAAAAAGCTTAGGAAGATGGAAATGCATGAATGTTATCTTGTTGAACTCTGTTTATTTTTTGTTTTTAATATGGCCATGGTTTTGTTTAATGTAAACTATTTTTGGGCGTTATTTTCATGTTTATTTATGACCAGTAAGGGAATCGAAGAATGAGAATAGCCGTGGTCGTGGAGGTGGACGTGGCTTTGGACGAGGGCGTGGTGGTGGAGGATTCAATAGAGACTCAGCCAACAATGAAAATGGTGGCAAGAACGGATTCTCTGATCGTTACCAGGCTCCTGAGGATGGTGAAAAGGCAACTGAAAGGCGTGGTTATGGTGGTCCCCGTGGTTCCTTCCGTGGTCCTCGTCGTGGTGGCTTCAGCAATGGGGAAACGGAAGAAGGTGAACAGCCCCGAAGAGTGTATGAACGTCGCAGTGGAACTGGACGTGGGTTAGTATATTCTTTACTATGATAGCTAGTTTCCTGTTCGATCAATTTCCTGGCAATTTCTTTTGTAGTTATCTTACCCTTACTGATTGTTTTGATTTCAGCAATGAGTTTAAGCGTGATGGGGCTGGTCGTAGGAACTGGGGAGCTCCTGGTGATGAAATCGCCCCGTAAGTTCACTTATCGAATTGTGAGACATTAACTGATTTGATGACATACCTCTGATATTTTCTCGATTTATGGATGTTAGGGACGTGGAAGAGCCTGTTGCTGAGAACGAGAAGAATGTTGCACCAGAGCAACAATTGGGAGAGGATAGTGTCGTTGATGATAACAACAAAGAGGAGGCCGTGAAGGAAGCAGAGGAGAAGGAGCCTGAGGATAAGGTAACAACTTTAGTTTTTAGCATCGATATCGAATTTGTATGGCAAGTCGATCGGCTATAAAATTGATTCGACCATCTTCTTACAGGAGATGACCCTGAAAGAGTATGAGAAGCTCCGTGAAGAGAGTAGGAAACTGCTGGCAAAGACCGAGTTGAGAAAGGCCGAGGTCGATGAGGAACTAGAGAACATGCAGCAGCTTTCCTGCAAAAAGAGCAACGACGAAATCTTCGCCAAATTGGTGACATCTTATTTCCTGTTACTATTACAATTCCTCCATTTCAGCTCTGCTTTTGTTGTTAATCATATAGAATTTGTGGTCAGGGTTCTGATAAGGATAAGCGCAAGGACATTGCGGACAAGGAGGAAAAAGCTAAGAAAGTATGAACATATTAGATATTAACAACCTGTGTAATTAAGTTCTTGTGTGATTGTTCTTACTGAAGTTACTATTTTTGGTGTTGGTAGTCTGTGACTATAACCGAGTTCCTGAAGCCCGCGGAAGGCGAGAGGTACTACAACCCGGGTGGTCGAGGTCGAGGACGTGGGCGGGGAGGATCTAGAGGTGGATTCAACAACGGAAGCAACAGAATGAATGTGGCAGCAGCGGCGGCGGCCCCGTCGATTGAAGATCAGGGGCAGTTCCCTTCATTGATGAGTGCTAAGTGAGAAGTTATTTTGGTAACTACATTTTAAAAAAGATTATTGATGAGATTATATTATATTATATGAGATCAGGATTTTTGAGTTACAACTAAACTGGTATGAACAGGATATTCTGCTATATGTAGTGTAAATCATGGATGTTGTGTCTTGAACGCTGTTTTAAGTTATGCATCAATTTTGATTTTTGTTGGAAG

mRNA sequence

GGTTTATTCCAGCCTCATCTTTGCGGCGTGGCTAGGGTTTTCTTTTTACCCAATTGCTCAATTTCTGATTTTCACACTCATTTCCTCTCACTCCGTTTCCATACCTCAAATTACTTTCCAAATTTGTATTGCTATCTTCAATCGGCTGTTCTTTATGGATTGTAATAATTTCTGAAGAATTTTCGTTCAGTGAGTTGATTTTCACTTTGCAGTTGGTCGTCTGCGTGTGAGTTGCAGTTCTAGATTGAACGGATATGGCAACCATGAATCCTTTTGATCTCCTCGTCGACGATGACAACGAGGACCCTAATCAGCTCGTTTCTGCACAGCGGTCCGCTCCGGCTGTCCCGTCCAAGAAGGCTCCTGCTCTGGCTCAGCCTGCAAAACCGGCTAACCTTCCTTCCAAGCCGCTCCCTCCTGCTCAGGCTGTAAGGGAATCGAAGAATGAGAATAGCCGTGGTCGTGGAGGTGGACGTGGCTTTGGACGAGGGCGTGGTGGTGGAGGATTCAATAGAGACTCAGCCAACAATGAAAATGGTGGCAAGAACGGATTCTCTGATCGTTACCAGGCTCCTGAGGATGGTGAAAAGGCAACTGAAAGGCGTGGTTATGGTGGTCCCCGTGGTTCCTTCCGTGGTCCTCGTCGTGGTGGCTTCAGCAATGGGGAAACGGAAGAAGGTGAACAGCCCCGAAGAGTGTATGAACGTCGCAGTGGAACTGGACGTGGCAATGAGTTTAAGCGTGATGGGGCTGGTCGTAGGAACTGGGGAGCTCCTGGTGATGAAATCGCCCCGGACGTGGAAGAGCCTGTTGCTGAGAACGAGAAGAATGTTGCACCAGAGCAACAATTGGGAGAGGATAGTGTCGTTGATGATAACAACAAAGAGGAGGCCGTGAAGGAAGCAGAGGAGAAGGAGCCTGAGGATAAGGAGATGACCCTGAAAGAGTATGAGAAGCTCCGTGAAGAGAGTAGGAAACTGCTGGCAAAGACCGAGTTGAGAAAGGCCGAGGTCGATGAGGAACTAGAGAACATGCAGCAGCTTTCCTGCAAAAAGAGCAACGACGAAATCTTCGCCAAATTGGGTTCTGATAAGGATAAGCGCAAGGACATTGCGGACAAGGAGGAAAAAGCTAAGAAATCTGTGACTATAACCGAGTTCCTGAAGCCCGCGGAAGGCGAGAGGTACTACAACCCGGGTGGTCGAGGTCGAGGACGTGGGCGGGGAGGATCTAGAGGTGGATTCAACAACGGAAGCAACAGAATGAATGTGGCAGCAGCGGCGGCGGCCCCGTCGATTGAAGATCAGGGGCAGTTCCCTTCATTGATGAGTGCTAAGTGAGAAGTTATTTTGGTAACTACATTTTAAAAAAGATTATTGATGAGATTATATTATATTATATGAGATCAGGATTTTTGAGTTACAACTAAACTGGTATGAACAGGATATTCTGCTATATGTAGTGTAAATCATGGATGTTGTGTCTTGAACGCTGTTTTAAGTTATGCATCAATTTTGATTTTTGTTGGAAG

Coding sequence (CDS)

ATGGCAACCATGAATCCTTTTGATCTCCTCGTCGACGATGACAACGAGGACCCTAATCAGCTCGTTTCTGCACAGCGGTCCGCTCCGGCTGTCCCGTCCAAGAAGGCTCCTGCTCTGGCTCAGCCTGCAAAACCGGCTAACCTTCCTTCCAAGCCGCTCCCTCCTGCTCAGGCTGTAAGGGAATCGAAGAATGAGAATAGCCGTGGTCGTGGAGGTGGACGTGGCTTTGGACGAGGGCGTGGTGGTGGAGGATTCAATAGAGACTCAGCCAACAATGAAAATGGTGGCAAGAACGGATTCTCTGATCGTTACCAGGCTCCTGAGGATGGTGAAAAGGCAACTGAAAGGCGTGGTTATGGTGGTCCCCGTGGTTCCTTCCGTGGTCCTCGTCGTGGTGGCTTCAGCAATGGGGAAACGGAAGAAGGTGAACAGCCCCGAAGAGTGTATGAACGTCGCAGTGGAACTGGACGTGGCAATGAGTTTAAGCGTGATGGGGCTGGTCGTAGGAACTGGGGAGCTCCTGGTGATGAAATCGCCCCGGACGTGGAAGAGCCTGTTGCTGAGAACGAGAAGAATGTTGCACCAGAGCAACAATTGGGAGAGGATAGTGTCGTTGATGATAACAACAAAGAGGAGGCCGTGAAGGAAGCAGAGGAGAAGGAGCCTGAGGATAAGGAGATGACCCTGAAAGAGTATGAGAAGCTCCGTGAAGAGAGTAGGAAACTGCTGGCAAAGACCGAGTTGAGAAAGGCCGAGGTCGATGAGGAACTAGAGAACATGCAGCAGCTTTCCTGCAAAAAGAGCAACGACGAAATCTTCGCCAAATTGGGTTCTGATAAGGATAAGCGCAAGGACATTGCGGACAAGGAGGAAAAAGCTAAGAAATCTGTGACTATAACCGAGTTCCTGAAGCCCGCGGAAGGCGAGAGGTACTACAACCCGGGTGGTCGAGGTCGAGGACGTGGGCGGGGAGGATCTAGAGGTGGATTCAACAACGGAAGCAACAGAATGAATGTGGCAGCAGCGGCGGCGGCCCCGTCGATTGAAGATCAGGGGCAGTTCCCTTCATTGATGAGTGCTAAGTGA

Protein sequence

MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVRESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYGGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAPDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSAK

Homology

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BLAST of CmoCh19G004130 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.1e-70
Identity = 210/370 (56.76%), Postives = 250/370 (67.57%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQ-PAKPA-NLPSKPLPPAQA 60
           MAT+NPFDLL DDD EDP+QL  A        SKK+  ++  PAK A  LPSKPLPPAQA
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKID--KSKKSGQVSSLPAKSAPKLPSKPLPPAQA 60

Query: 61  VRESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRG 120
           VRE++++  RG GG  GF RGR  GG+NRD  N  NG   G++      +  + + ERRG
Sbjct: 61  VREARSDAPRGGGGRGGFNRGR--GGYNRDDGN--NGYSGGYTKPSGEGDVSKSSYERRG 120

Query: 121 YGG-PRGSFRGP-------RRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRN 180
            GG PRGSFRG        RRGGFSN E  +GE+PRR +ERRSGTGRG++FKRDG+GR N
Sbjct: 121 GGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGSGRGN 180

Query: 181 WGAPGDEIAPDVEEPV-AENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTL 240
           WG PG+EIA + E     E EK+V  +  +  D V  D NKE+ V   EEKEPEDKEMTL
Sbjct: 181 WGTPGEEIAAETEAVAGVETEKDVGEKPAV--DDVAADANKEDTV--VEEKEPEDKEMTL 240

Query: 241 KEYEKLREESRKLLAKTELRKAEVDEEL-ENMQQLSCKKSNDEIFAKLGSDKDKRKDIAD 300
            EYEK+ EE +K L      + +VD ++ E+MQQLS KKSNDEIF KLGSDKDKRKD  D
Sbjct: 241 DEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD--D 300

Query: 301 KEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGG-SRGGFNNGSNRMNVAAAAAAPS 358
           KEEKAKK+V+I EFLKPAEG  YY  GGRG GRGRGG  RGG ++G +        AAP+
Sbjct: 301 KEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGES--GGYRNEAAPA 352

[Close]

BLAST of CmoCh19G004130 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.8e-68
Identity = 179/304 (58.88%), Postives = 220/304 (72.37%), Query Frame = 0


Query: 69  GRGGGRGFGRGRG---GGGFNRDSANNEN--GGKNGFSDRYQAPEDGE--KATERR-GYG 128
           GRGG RG GRGRG   G GFN++SA++EN  G  NGFS RY+  EDGE  K +ERR GYG
Sbjct: 4   GRGGPRGGGRGRGPGRGRGFNQESADDENAFGSNNGFSGRYRVQEDGESGKLSERRGGYG 63

Query: 129 GPRGSFRGPRRGGFSNGETE--EGEQPRRVYERRSGTGRGNEF-KRDGAGRRNWGAPGDE 188
           GPRG F G RRGGF+NG+    EGE+PRRV++RRSGTGRGNE+ KR+G+GR NWG P D+
Sbjct: 64  GPRGGFHGGRRGGFNNGDAAEGEGERPRRVFDRRSGTGRGNEYIKREGSGRGNWGTPADD 123

Query: 189 IAPDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLRE 248
           IA + E PV + EK V  E++ G++   +D NK+    E EEKEPE+KEMTL+EYEKL E
Sbjct: 124 IAQETEVPVNDGEKIVEAEKEAGQEE-AEDTNKDSTAAEPEEKEPEEKEMTLEEYEKLME 183

Query: 249 ESRK--LLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKK 308
           E RK  L  K E RK  +D+ELE+MQ LS KK++DEIF KLGS+K+KRK+     EKA+K
Sbjct: 184 EKRKALLALKPEERKVNLDKELESMQLLSNKKNDDEIFIKLGSEKEKRKEAV---EKARK 243

Query: 309 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFP 360
           + +I EFLKPAEGE Y   GGRGRG GRG  RGGF  G   +    + +APSIED GQFP
Sbjct: 244 TQSINEFLKPAEGENYSRRGGRGRGPGRG--RGGFGGG---VGGNKSFSAPSIEDVGQFP 298

[Close]

BLAST of CmoCh19G004130 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 6.0e-64
Identity = 192/370 (51.89%), Postives = 238/370 (64.32%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MA++NPFDLL  DD EDP+QL  A     +   +KA A  QP K A  P+KP PP+QAVR
Sbjct: 1   MASLNPFDLL-GDDAEDPSQLAVAL----SQKVEKAAAAVQPPKAAKFPTKPAPPSQAVR 60

Query: 61  ESKNENSRGRG--GGR-GFGRGRGGGGFNRDSANNE-NGGKNGFSDRYQAP-EDGEKATE 120
           ES+N    GRG  GGR GF RGRG GG+NRD+ NN+  G +NGFS  Y+ P ED + A+ 
Sbjct: 61  ESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRRPSEDADGASR 120

Query: 121 RRGYGGPR--GSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGA 180
               GG R  G   GPRRGG +NGE+ + E+P R Y+R S TG G   KR+G GR NWG 
Sbjct: 121 GGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRGNWGT 180

Query: 181 PGDEIAPDVEEPVAENEKNVAPEQQLGEDSVVDDNN----KEEAVKEAEEKEPEDKEMTL 240
             D+I P  EEP  E EK+   E+Q GED   +       +E+A KEAEE E   +EMTL
Sbjct: 181 TEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAEA--REMTL 240

Query: 241 KEYEKLREESRKLLAKTELRKAEVDEEL-ENMQQLSCKKSND-EIFAKLGSDKDKRKDIA 300
           +EYEK+ EE +K L  T++ + +VD ++ E+MQQLS KK+ D EIF KLGSDK+KRKD  
Sbjct: 241 EEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRKDAT 300

Query: 301 DKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPS 358
              EKAKKS++I EFLKPA+G+RY   GG  RGR   G RGG   G N+   A  AAAP+
Sbjct: 301 ---EKAKKSLSINEFLKPADGKRYNGRGGGSRGR---GGRGGRGEGGNQ-RYAKEAAAPA 356

[Close]

BLAST of CmoCh19G004130 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 7.3e-62
Identity = 189/374 (50.53%), Postives = 242/374 (64.71%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MA++NPFDLL DDD EDP+Q+V+++         K  A  Q AK   +P+KP PP+QAVR
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASK-------PLKVVAPVQTAKSGKMPTKPPPPSQAVR 60

Query: 61  ESKNENSRGRGGGRGFGRGRGG-GGFNRDSANNEN-GGKNGFSDRYQAPEDGEKATERRG 120
           E++N    GRG GRG   GRGG GG NRDS NN+    +NG+   Y+  E+G+ A  RR 
Sbjct: 61  EARNAPGGGRGAGRGGSYGRGGRGGNNRDSRNNDGPANENGYGGGYRRSEEGDGA--RR- 120

Query: 121 YGGPRGSFRGPRRGGFSN-GETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE 180
            GGP G +RG RRG +SN G++ + E+PR+ Y+R S T  GNE KRDGAGR NWG   D+
Sbjct: 121 -GGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANWGTTQDD 180

Query: 181 IAPDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLRE 240
           I P  EE  A  +KN+  E+Q GE    D  N+  A K AEEK PEDKEMTL+EYEK+ E
Sbjct: 181 ITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEK-AEEK-PEDKEMTLEEYEKVLE 240

Query: 241 ESRKLLAKTELRKAEVD-EELENMQQLSCKKS-NDEIFAKLGSDKDKRKDIADKEEKAKK 300
           E +K L  T++ + +VD +  E MQQLS KKS NDE+F KLG++KDKR  I ++EEK +K
Sbjct: 241 EKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITEREEKTRK 300

Query: 301 SVTITEFLKPAEGERYYNP-----GGR-GRGRGRGGSRGGFNN----GSNRMNVAAAAAA 358
           S++I EFLKPA+G+ YY P     GGR GRG   G  R G  N    G N+ +  AAA A
Sbjct: 301 SLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGGAAAQA 358

[Close]

BLAST of CmoCh19G004130 vs. ExPASy TrEMBL
Match: A0A6J1EUM3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111438060 PE=4 SV=1)

HSP 1 Score: 661.0 bits (1704), Expect = 2.9e-186
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60

Query: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120
           ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG
Sbjct: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120

Query: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180
           GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP
Sbjct: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180

Query: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240
           DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR
Sbjct: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240

Query: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300
           KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT
Sbjct: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300

Query: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSA 360
           EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSA
Sbjct: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSA 360

Query: 361 K 362
           K
Sbjct: 361 K 361

[Close]

BLAST of CmoCh19G004130 vs. ExPASy TrEMBL
Match: A0A6J1I4B3 (RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111470534 PE=4 SV=1)

HSP 1 Score: 646.0 bits (1665), Expect = 9.5e-182
Identity = 355/361 (98.34%), Postives = 355/361 (98.34%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60

Query: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120
           ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG
Sbjct: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120

Query: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180
           GPRGSFRGPRRGGFSNGETEE EQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP
Sbjct: 121 GPRGSFRGPRRGGFSNGETEEAEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180

Query: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240
           DVE PVAENEKNVAPEQQLGED VVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR
Sbjct: 181 DVEAPVAENEKNVAPEQQLGEDGVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240

Query: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300
           KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDI DKEEKAKKSVTIT
Sbjct: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIVDKEEKAKKSVTIT 300

Query: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSA 360
           EFLKP EGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNV AAAAAPSIEDQGQFPSLMSA
Sbjct: 301 EFLKPTEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNV-AAAAAPSIEDQGQFPSLMSA 360

Query: 361 K 362
           K
Sbjct: 361 K 360

[Close]

BLAST of CmoCh19G004130 vs. ExPASy TrEMBL
Match: A0A1S3CPW2 (plasminogen activator inhibitor 1 RNA-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103503456 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 4.9e-162
Identity = 330/364 (90.66%), Postives = 339/364 (93.13%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MATMNPFDLLVDDDNEDPNQL SAQRSAPA+PSKKAPA AQPAKPA LPSKPLPPAQAVR
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPALPSKKAPAPAQPAKPAKLPSKPLPPAQAVR 60

Query: 61  ESKNENSR-GRGGGRGFGRGR--GGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERR 120
           ESKNENSR GRGGGRGFGRGR  GGGGFNRDSANNEN G+NGFSDRYQ PEDGEKA ERR
Sbjct: 61  ESKNENSRGGRGGGRGFGRGRGGGGGGFNRDSANNENSGRNGFSDRYQTPEDGEKAAERR 120

Query: 121 GYGGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE 180
           GYG PRGSFRGPRRGGFSNGE EEGE+PRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE
Sbjct: 121 GYGAPRGSFRGPRRGGFSNGEAEEGERPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE 180

Query: 181 IAPDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLRE 240
            APDVEEPVAENEKNVAPEQQLGED V D+N  EEAVKE EEKEPEDKEMTLKEYEKLRE
Sbjct: 181 NAPDVEEPVAENEKNVAPEQQLGEDGVDDNNKAEEAVKEPEEKEPEDKEMTLKEYEKLRE 240

Query: 241 ESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSV 300
           ESRKLLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG+DKDKRKD+ADKEE+AKKSV
Sbjct: 241 ESRKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDVADKEERAKKSV 300

Query: 301 TITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSL 360
           TITEFLKPAEGERYYNPGGRGRGRGR GSRGGFNNGSNRMNV    AAPSIED GQFPSL
Sbjct: 301 TITEFLKPAEGERYYNPGGRGRGRGR-GSRGGFNNGSNRMNV----AAPSIEDPGQFPSL 358

Query: 361 MSAK 362
            SAK
Sbjct: 361 -SAK 358

[Close]

BLAST of CmoCh19G004130 vs. ExPASy TrEMBL
Match: A0A0A0LKF6 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G914560 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 9.3e-161
Identity = 329/364 (90.38%), Postives = 338/364 (92.86%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MATMNPFDLLVDDDNEDPNQL SA RSAP +PSKKAPA AQPAKPA LPSKPLPPAQAVR
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLASAHRSAPVLPSKKAPAPAQPAKPAKLPSKPLPPAQAVR 60

Query: 61  ESKNENSR-GRGGGRGFGRGR-GGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRG 120
           ESKN+N R GRGGGRGFGRGR GGGGFNRDSANNENGG+NGFSDRYQ PEDGEKA ERRG
Sbjct: 61  ESKNDNGRGGRGGGRGFGRGRGGGGGFNRDSANNENGGRNGFSDRYQTPEDGEKAAERRG 120

Query: 121 YGGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEI 180
           YG PRGSFRGPRR GFSNGE EEGE+PRRVYERRSGTGRGNEFKR+GAGRRNWGAPGDE 
Sbjct: 121 YGAPRGSFRGPRRAGFSNGEAEEGERPRRVYERRSGTGRGNEFKREGAGRRNWGAPGDEN 180

Query: 181 APDVEEPVAENEKNVAPEQQLGEDSVVDDNNK-EEAVKEAEEKEPEDKEMTLKEYEKLRE 240
           APDVEEPVAENEKNVAPEQQLGED VVDDNNK EEAVKE EEKEPEDKEMTLKEYEKLRE
Sbjct: 181 APDVEEPVAENEKNVAPEQQLGEDGVVDDNNKTEEAVKEPEEKEPEDKEMTLKEYEKLRE 240

Query: 241 ESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSV 300
           ESRKLLAKTE+RKAEVDEELENMQQLS KK+NDEIFAKLG+DKDKRKD ADKEE+AKKSV
Sbjct: 241 ESRKLLAKTEVRKAEVDEELENMQQLSSKKTNDEIFAKLGTDKDKRKDAADKEERAKKSV 300

Query: 301 TITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSL 360
           TITEFLKPAEGERYYNPGGRGRGRGR GSRGGFNNGSNRMNV    AAPSIED GQFPSL
Sbjct: 301 TITEFLKPAEGERYYNPGGRGRGRGR-GSRGGFNNGSNRMNV----AAPSIEDPGQFPSL 358

Query: 361 MSAK 362
            SAK
Sbjct: 361 -SAK 358

[Close]

BLAST of CmoCh19G004130 vs. ExPASy TrEMBL
Match: A0A6J1E459 (RGG repeats nuclear RNA binding protein A-like OS=Momordica charantia OX=3673 GN=LOC111025910 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.6e-157
Identity = 324/366 (88.52%), Postives = 339/366 (92.62%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKP-ANLPSKPLPPAQAV 60
           MATMNPFDLLVDDDNEDPNQL SAQRSAP+ PSKKAPALAQPAKP A LPSKPLPPAQAV
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLASAQRSAPSPPSKKAPALAQPAKPAAKLPSKPLPPAQAV 60

Query: 61  RESKNENSRGRGGGRGFGRGR-GGGGFNRDSANNEN---GGKNGFSDRYQAPEDGEKATE 120
           RE++NENSRGRGGGRGFGRGR GGGGFNRDSANNE+   GGKNGFSDRY  PE+GEK  E
Sbjct: 61  REARNENSRGRGGGRGFGRGRGGGGGFNRDSANNESNAPGGKNGFSDRYLPPEEGEKG-E 120

Query: 121 RRGYGGPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPG 180
           +RGYGGPRGSFRGPRRGGFSNGE EEGE PRR+++RRSGTGRGNEFKRDG GRRNWGAPG
Sbjct: 121 KRGYGGPRGSFRGPRRGGFSNGEAEEGEHPRRMFDRRSGTGRGNEFKRDGGGRRNWGAPG 180

Query: 181 DEIAPDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKL 240
           DEIAPDVEEPVAENEKNVAPEQQLGED VV+D NKE+A KE EEKEPEDKEMTLKEYEKL
Sbjct: 181 DEIAPDVEEPVAENEKNVAPEQQLGED-VVNDENKEDAAKEPEEKEPEDKEMTLKEYEKL 240

Query: 241 REESRKLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKK 300
           REE+RKLLAKTE+RKAEVDEELENMQQLSCKKSNDEIFAKLG DKDKRKD ADKEEKAKK
Sbjct: 241 REENRKLLAKTEVRKAEVDEELENMQQLSCKKSNDEIFAKLGGDKDKRKDNADKEEKAKK 300

Query: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFP 360
           SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNR+NV    +APSIED GQFP
Sbjct: 301 SVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRINV----SAPSIEDPGQFP 359

Query: 361 SLMSAK 362
           SL SAK
Sbjct: 361 SL-SAK 359

[Close]

BLAST of CmoCh19G004130 vs. NCBI nr
Match: XP_022931786.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata])

HSP 1 Score: 661.0 bits (1704), Expect = 5.9e-186
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60

Query: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120
           ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG
Sbjct: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120

Query: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180
           GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP
Sbjct: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180

Query: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240
           DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR
Sbjct: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240

Query: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300
           KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT
Sbjct: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300

Query: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSA 360
           EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSA
Sbjct: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSA 360

Query: 361 K 362
           K
Sbjct: 361 K 361

[Close]

BLAST of CmoCh19G004130 vs. NCBI nr
Match: KAG6571794.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 656.4 bits (1692), Expect = 1.5e-184
Identity = 361/362 (99.72%), Postives = 361/362 (99.72%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60

Query: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120
           ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG
Sbjct: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120

Query: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180
           GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP
Sbjct: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180

Query: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240
           DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR
Sbjct: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240

Query: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300
           KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT
Sbjct: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300

Query: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNV-AAAAAAPSIEDQGQFPSLMS 360
           EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNV AAAAAAPSIEDQGQFPSLMS
Sbjct: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAAPSIEDQGQFPSLMS 360

Query: 361 AK 362
           AK
Sbjct: 361 AK 362

[Close]

BLAST of CmoCh19G004130 vs. NCBI nr
Match: XP_023554179.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 652.9 bits (1683), Expect = 1.6e-183
Identity = 356/361 (98.61%), Postives = 357/361 (98.89%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAP+LAQPAKPANLPSKPLPPAQAVR
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPSLAQPAKPANLPSKPLPPAQAVR 60

Query: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120
           ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG
Sbjct: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120

Query: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180
           GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP
Sbjct: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180

Query: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240
           DVEEPVAENEKNVAPEQQLGED  VDDNNKEEA KEAEEKEPEDKEMTLKEYEKLREESR
Sbjct: 181 DVEEPVAENEKNVAPEQQLGEDGAVDDNNKEEAAKEAEEKEPEDKEMTLKEYEKLREESR 240

Query: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300
           KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT
Sbjct: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300

Query: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSA 360
           EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRM VAAAAAAPSIEDQGQFPSLMSA
Sbjct: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMTVAAAAAAPSIEDQGQFPSLMSA 360

Query: 361 K 362
           K
Sbjct: 361 K 361

[Close]

BLAST of CmoCh19G004130 vs. NCBI nr
Match: XP_022971841.1 (RGG repeats nuclear RNA binding protein A-like [Cucurbita maxima])

HSP 1 Score: 646.0 bits (1665), Expect = 2.0e-181
Identity = 355/361 (98.34%), Postives = 355/361 (98.34%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60

Query: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120
           ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG
Sbjct: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120

Query: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180
           GPRGSFRGPRRGGFSNGETEE EQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP
Sbjct: 121 GPRGSFRGPRRGGFSNGETEEAEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180

Query: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240
           DVE PVAENEKNVAPEQQLGED VVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR
Sbjct: 181 DVEAPVAENEKNVAPEQQLGEDGVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240

Query: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300
           KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDI DKEEKAKKSVTIT
Sbjct: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIVDKEEKAKKSVTIT 300

Query: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPSIEDQGQFPSLMSA 360
           EFLKP EGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNV AAAAAPSIEDQGQFPSLMSA
Sbjct: 301 EFLKPTEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNV-AAAAAPSIEDQGQFPSLMSA 360

Query: 361 K 362
           K
Sbjct: 361 K 360

[Close]

BLAST of CmoCh19G004130 vs. NCBI nr
Match: KAG7011492.1 (RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 630.2 bits (1624), Expect = 1.1e-176
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR
Sbjct: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60

Query: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120
           ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG
Sbjct: 61  ESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRGYG 120

Query: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180
           GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP
Sbjct: 121 GPRGSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDEIAP 180

Query: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240
           DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR
Sbjct: 181 DVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLREESR 240

Query: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300
           KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT
Sbjct: 241 KLLAKTELRKAEVDEELENMQQLSCKKSNDEIFAKLGSDKDKRKDIADKEEKAKKSVTIT 300

Query: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAA 346
           EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAA
Sbjct: 301 EFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAA 345

[Close]

BLAST of CmoCh19G004130 vs. TAIR 10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 268.5 bits (685), Expect = 8.0e-72
Identity = 210/370 (56.76%), Postives = 250/370 (67.57%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQ-PAKPA-NLPSKPLPPAQA 60
           MAT+NPFDLL DDD EDP+QL  A        SKK+  ++  PAK A  LPSKPLPPAQA
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKID--KSKKSGQVSSLPAKSAPKLPSKPLPPAQA 60

Query: 61  VRESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRG 120
           VRE++++  RG GG  GF RGR  GG+NRD  N  NG   G++      +  + + ERRG
Sbjct: 61  VREARSDAPRGGGGRGGFNRGR--GGYNRDDGN--NGYSGGYTKPSGEGDVSKSSYERRG 120

Query: 121 YGG-PRGSFRGP-------RRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRN 180
            GG PRGSFRG        RRGGFSN E  +GE+PRR +ERRSGTGRG++FKRDG+GR N
Sbjct: 121 GGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGSGRGN 180

Query: 181 WGAPGDEIAPDVEEPV-AENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTL 240
           WG PG+EIA + E     E EK+V  +  +  D V  D NKE+ V   EEKEPEDKEMTL
Sbjct: 181 WGTPGEEIAAETEAVAGVETEKDVGEKPAV--DDVAADANKEDTV--VEEKEPEDKEMTL 240

Query: 241 KEYEKLREESRKLLAKTELRKAEVDEEL-ENMQQLSCKKSNDEIFAKLGSDKDKRKDIAD 300
            EYEK+ EE +K L      + +VD ++ E+MQQLS KKSNDEIF KLGSDKDKRKD  D
Sbjct: 241 DEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD--D 300

Query: 301 KEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGG-SRGGFNNGSNRMNVAAAAAAPS 358
           KEEKAKK+V+I EFLKPAEG  YY  GGRG GRGRGG  RGG ++G +        AAP+
Sbjct: 301 KEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGES--GGYRNEAAPA 352

[Close]

BLAST of CmoCh19G004130 vs. TAIR 10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 246.1 bits (627), Expect = 4.2e-65
Identity = 192/370 (51.89%), Postives = 238/370 (64.32%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MA++NPFDLL  DD EDP+QL  A     +   +KA A  QP K A  P+KP PP+QAVR
Sbjct: 1   MASLNPFDLL-GDDAEDPSQLAVAL----SQKVEKAAAAVQPPKAAKFPTKPAPPSQAVR 60

Query: 61  ESKNENSRGRG--GGR-GFGRGRGGGGFNRDSANNE-NGGKNGFSDRYQAP-EDGEKATE 120
           ES+N    GRG  GGR GF RGRG GG+NRD+ NN+  G +NGFS  Y+ P ED + A+ 
Sbjct: 61  ESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRRPSEDADGASR 120

Query: 121 RRGYGGPR--GSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGA 180
               GG R  G   GPRRGG +NGE+ + E+P R Y+R S TG G   KR+G GR NWG 
Sbjct: 121 GGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRGNWGT 180

Query: 181 PGDEIAPDVEEPVAENEKNVAPEQQLGEDSVVDDNN----KEEAVKEAEEKEPEDKEMTL 240
             D+I P  EEP  E EK+   E+Q GED   +       +E+A KEAEE E   +EMTL
Sbjct: 181 TEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAEA--REMTL 240

Query: 241 KEYEKLREESRKLLAKTELRKAEVDEEL-ENMQQLSCKKSND-EIFAKLGSDKDKRKDIA 300
           +EYEK+ EE +K L  T++ + +VD ++ E+MQQLS KK+ D EIF KLGSDK+KRKD  
Sbjct: 241 EEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRKDAT 300

Query: 301 DKEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGGSRGGFNNGSNRMNVAAAAAAPS 358
              EKAKKS++I EFLKPA+G+RY   GG  RGR   G RGG   G N+   A  AAAP+
Sbjct: 301 ---EKAKKSLSINEFLKPADGKRYNGRGGGSRGR---GGRGGRGEGGNQ-RYAKEAAAPA 356

[Close]

BLAST of CmoCh19G004130 vs. TAIR 10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 239.2 bits (609), Expect = 5.2e-63
Identity = 189/374 (50.53%), Postives = 242/374 (64.71%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MA++NPFDLL DDD EDP+Q+V+++         K  A  Q AK   +P+KP PP+QAVR
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASK-------PLKVVAPVQTAKSGKMPTKPPPPSQAVR 60

Query: 61  ESKNENSRGRGGGRGFGRGRGG-GGFNRDSANNEN-GGKNGFSDRYQAPEDGEKATERRG 120
           E++N    GRG GRG   GRGG GG NRDS NN+    +NG+   Y+  E+G+ A  RR 
Sbjct: 61  EARNAPGGGRGAGRGGSYGRGGRGGNNRDSRNNDGPANENGYGGGYRRSEEGDGA--RR- 120

Query: 121 YGGPRGSFRGPRRGGFSN-GETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGAPGDE 180
            GGP G +RG RRG +SN G++ + E+PR+ Y+R S T  GNE KRDGAGR NWG   D+
Sbjct: 121 -GGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDGAGRANWGTTQDD 180

Query: 181 IAPDVEEPVAENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTLKEYEKLRE 240
           I P  EE  A  +KN+  E+Q GE    D  N+  A K AEEK PEDKEMTL+EYEK+ E
Sbjct: 181 ITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEK-AEEK-PEDKEMTLEEYEKVLE 240

Query: 241 ESRKLLAKTELRKAEVD-EELENMQQLSCKKS-NDEIFAKLGSDKDKRKDIADKEEKAKK 300
           E +K L  T++ + +VD +  E MQQLS KKS NDE+F KLG++KDKR  I ++EEK +K
Sbjct: 241 EKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITEREEKTRK 300

Query: 301 SVTITEFLKPAEGERYYNP-----GGR-GRGRGRGGSRGGFNN----GSNRMNVAAAAAA 358
           S++I EFLKPA+G+ YY P     GGR GRG   G  R G  N    G N+ +  AAA A
Sbjct: 301 SLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGGAAAQA 358

[Close]

BLAST of CmoCh19G004130 vs. TAIR 10
Match: AT4G16830.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 226.5 bits (576), Expect = 3.5e-59
Identity = 174/310 (56.13%), Postives = 209/310 (67.42%), Query Frame = 0


Query: 59  VRESKNENSRGRGGGRGFGRGRGGGGFNRDSANNENGGKNGFSDRYQAPEDGEKATERRG 118
           VRE++++  RG GG  GF RGR  GG+NRD  N  NG   G++      +  + + ERRG
Sbjct: 48  VREARSDAPRGGGGRGGFNRGR--GGYNRDDGN--NGYSGGYTKPSGEGDVSKSSYERRG 107

Query: 119 YGG-PRGSFRGP-------RRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRN 178
            GG PRGSFRG        RRGGFSN E  +GE+PRR +ERRSGTGRG++FKRDG+GR N
Sbjct: 108 GGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGSGRGN 167

Query: 179 WGAPGDEIAPDVEEPV-AENEKNVAPEQQLGEDSVVDDNNKEEAVKEAEEKEPEDKEMTL 238
           WG PG+EIA + E     E EK+V  +  +  D V  D NKE+ V   EEKEPEDKEMTL
Sbjct: 168 WGTPGEEIAAETEAVAGVETEKDVGEKPAV--DDVAADANKEDTV--VEEKEPEDKEMTL 227

Query: 239 KEYEKLREESRKLLAKTELRKAEVDEEL-ENMQQLSCKKSNDEIFAKLGSDKDKRKDIAD 298
            EYEK+ EE +K L      + +VD ++ E+MQQLS KKSNDEIF KLGSDKDKRKD  D
Sbjct: 228 DEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD--D 287

Query: 299 KEEKAKKSVTITEFLKPAEGERYYNPGGRGRGRGRGG-SRGGFNNGSNRMNVAAAAAAPS 358
           KEEKAKK+V+I EFLKPAEG  YY  GGRG GRGRGG  RGG ++G +        AAP+
Sbjct: 288 KEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGES--GGYRNEAAPA 342

[Close]

BLAST of CmoCh19G004130 vs. TAIR 10
Match: AT5G47210.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 198.4 bits (503), Expect = 1.0e-50
Identity = 155/305 (50.82%), Postives = 197/305 (64.59%), Query Frame = 0


Query: 1   MATMNPFDLLVDDDNEDPNQLVSAQRSAPAVPSKKAPALAQPAKPANLPSKPLPPAQAVR 60
           MA++NPFDLL  DD EDP+QL  A     +   +KA A  QP K A  P+KP PP+QAVR
Sbjct: 1   MASLNPFDLL-GDDAEDPSQLAVAL----SQKVEKAAAAVQPPKAAKFPTKPAPPSQAVR 60

Query: 61  ESKNENSRGRG--GGR-GFGRGRGGGGFNRDSANNE-NGGKNGFSDRYQAP-EDGEKATE 120
           ES+N    GRG  GGR GF RGRG GG+NRD+ NN+  G +NGFS  Y+ P ED + A+ 
Sbjct: 61  ESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRRPSEDADGASR 120

Query: 121 RRGYGGPR--GSFRGPRRGGFSNGETEEGEQPRRVYERRSGTGRGNEFKRDGAGRRNWGA 180
               GG R  G   GPRRGG +NGE+ + E+P R Y+R S TG G   KR+G GR NWG 
Sbjct: 121 GGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNGGGRGNWGT 180

Query: 181 PGDEIAPDVEEPVAENEKNVAPEQQLGEDSVVDDNN----KEEAVKEAEEKEPEDKEMTL 240
             D+I P  EEP  E EK+   E+Q GED   +       +E+A KEAEE E   +EMTL
Sbjct: 181 TEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAEA--REMTL 240

Query: 241 KEYEKLREESRKLLAKTELRKAEVDEEL-ENMQQLSCKKSND-EIFAKLGSDKDKRKDIA 293
           +EYEK+ EE +K L  T++ + +VD ++ E+MQQLS KK+ D EIF KLGSDK+KRKD  
Sbjct: 241 EEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRKDAT 298

The following BLAST results are available for this feature:

BLAST of CmoCh19G004130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	1.1e-70	56.76	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	1.8e-68	58.88	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
Q9LVT8	6.0e-64	51.89	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
O23593	7.3e-62	50.53	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of CmoCh19G004130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUM3	2.9e-186	100.00	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I4B3	9.5e-182	98.34	RGG repeats nuclear RNA binding protein A-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3CPW2	4.9e-162	90.66	plasminogen activator inhibitor 1 RNA-binding protein-like OS=Cucumis melo OX=36...	[more]
A0A0A0LKF6	9.3e-161	90.38	HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G914...	[more]
A0A6J1E459	1.6e-157	88.52	RGG repeats nuclear RNA binding protein A-like OS=Momordica charantia OX=3673 GN...	[more]

BLAST of CmoCh19G004130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931786.1	5.9e-186	100.00	RGG repeats nuclear RNA binding protein A-like [Cucurbita moschata]	[more]
KAG6571794.1	1.5e-184	99.72	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]
XP_023554179.1	1.6e-183	98.61	RGG repeats nuclear RNA binding protein A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971841.1	2.0e-181	98.34	RGG repeats nuclear RNA binding protein A-like [Cucurbita maxima]	[more]
KAG7011492.1	1.1e-176	100.00	RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of CmoCh19G004130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16830.1	8.0e-72	56.76	Hyaluronan / mRNA binding family	[more]
AT5G47210.1	4.2e-65	51.89	Hyaluronan / mRNA binding family	[more]
AT4G17520.1	5.2e-63	50.53	Hyaluronan / mRNA binding family	[more]
AT4G16830.3	3.5e-59	56.13	Hyaluronan / mRNA binding family	[more]
AT5G47210.3	1.0e-50	50.82	Hyaluronan / mRNA binding family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 225..263
None	No IPR available	GENE3D	6.10.140.1040		coord: 143..255 e-value: 1.2E-7 score: 34.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 308..361
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..118
None	No IPR available	PANTHER	PTHR12299:SF64	PLASMINOGEN ACTIVATOR INHIBITOR 1 RNA-BINDING PROTEIN-LIKE	coord: 1..358
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 145..254 e-value: 3.6E-34 score: 129.5
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 145..253 e-value: 5.3E-24 score: 85.3
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 1..73 e-value: 8.0E-20 score: 71.5
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..358

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G004130.1	CmoCh19G004130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding