CmoCh19G003920 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G003920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase II subunit RPB2
Location	Cmo_Chr19: 4587333 .. 4587598 (-)
RNA-Seq Expression	CmoCh19G003920
Synteny	CmoCh19G003920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACCGCTGGAGCCTTCTCTGCGATTTCGTTCTGGTGCGATTTTACTTCTCTCTCTTCAACCTTGATGCCTCATTTCTTCTCTGGATCTCTTAGCTCAGTTCGTCTTGCTTCATTTTTCTTAGGTATGGATTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGCGGAAGCTCCAACGATTCTTCTTCTGCAAATCCTCAGTAG

mRNA sequence

ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACCGCTGGAGCCTTCTCTGCGATTTCGTTCTGGTGCGATTTTACTTCTCTCTCTTCAACCTTGATGCCTCATTTCTTCTCTGGATCTCTTAGCTCAGTTCGTCTTGCTTCATTTTTCTTAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGCGGAAGCTCCAACGATTCTTCTTCTGCAAATCCTCAGTAG

Coding sequence (CDS)

ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACCGCTGGAGCCTTCTCTGCGATTTCGTTCTGGTGCGATTTTACTTCTCTCTCTTCAACCTTGATGCCTCATTTCTTCTCTGGATCTCTTAGCTCAGTTCGTCTTGCTTCATTTTTCTTAGAGTCCGCTCGAAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGCGGAAGCTCCAACGATTCTTCTTCTGCAAATCCTCAGTAG

Protein sequence

MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLGDLIQDLRRGSSNDSSSANPQ

Homology

[Close]

BLAST of CmoCh19G003920 vs. ExPASy TrEMBL
Match: A0A6J1F0E3 (uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC111438056 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.5e-14
Identity = 53/80 (66.25%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          MEKSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 58

Query: 61 DLIQDLRRGSSNDSSSANPQ 81
          DLIQDLRRGSSNDSSSANPQ
Sbjct: 61 DLIQDLRRGSSNDSSSANPQ 58

[Close]

BLAST of CmoCh19G003920 vs. ExPASy TrEMBL
Match: A0A6J1I859 (uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 52/80 (65.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          MEKSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 58

Query: 61 DLIQDLRRGSSNDSSSANPQ 81
          DLIQDLRRGSSNDSSSA PQ
Sbjct: 61 DLIQDLRRGSSNDSSSATPQ 58

[Close]

BLAST of CmoCh19G003920 vs. ExPASy TrEMBL
Match: A0A6J1DRK3 (uncharacterized protein LOC111023182 OS=Momordica charantia OX=3673 GN=LOC111023182 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 47/76 (61.84%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          MEKSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 54

Query: 61 DLIQDLRRGSSNDSSS 77
          DLIQDLRRGSSN  SS
Sbjct: 61 DLIQDLRRGSSNSDSS 54

[Close]

BLAST of CmoCh19G003920 vs. ExPASy TrEMBL
Match: A0A5A7TAA3 (Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003920 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 48/81 (59.26%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          M KSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 59

Query: 61 DLIQDLRRG-SSNDSSSANPQ 81
          DLIQDLRRG S +DSSS  PQ
Sbjct: 61 DLIQDLRRGVSKSDSSSETPQ 59

[Close]

BLAST of CmoCh19G003920 vs. ExPASy TrEMBL
Match: A0A1S4E6G4 (uncharacterized protein LOC103503490 OS=Cucumis melo OX=3656 GN=LOC103503490 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 48/81 (59.26%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          M KSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 59

Query: 61 DLIQDLRRG-SSNDSSSANPQ 81
          DLIQDLRRG S +DSSS  PQ
Sbjct: 61 DLIQDLRRGVSKSDSSSETPQ 59

[Close]

BLAST of CmoCh19G003920 vs. NCBI nr
Match: XP_022931780.1 (uncharacterized protein LOC111438056 [Cucurbita moschata])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 53/80 (66.25%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          MEKSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 58

Query: 61 DLIQDLRRGSSNDSSSANPQ 81
          DLIQDLRRGSSNDSSSANPQ
Sbjct: 61 DLIQDLRRGSSNDSSSANPQ 58

[Close]

BLAST of CmoCh19G003920 vs. NCBI nr
Match: XP_022973256.1 (uncharacterized protein LOC111471813 [Cucurbita maxima] >KAG7011478.1 hypothetical protein SDJN02_26384 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.0 bits (206), Expect = 6.6e-13
Identity = 52/80 (65.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          MEKSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 58

Query: 61 DLIQDLRRGSSNDSSSANPQ 81
          DLIQDLRRGSSNDSSSA PQ
Sbjct: 61 DLIQDLRRGSSNDSSSATPQ 58

[Close]

BLAST of CmoCh19G003920 vs. NCBI nr
Match: XP_023553989.1 (uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 6.2e-11
Identity = 51/81 (62.96%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          MEKSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 59

Query: 61 DLIQDLRRGSS-NDSSSANPQ 81
          DLIQDLRRGSS +DSSSA PQ
Sbjct: 61 DLIQDLRRGSSDSDSSSATPQ 59

[Close]

BLAST of CmoCh19G003920 vs. NCBI nr
Match: XP_022156252.1 (uncharacterized protein LOC111023182 [Momordica charantia] >XP_022156260.1 uncharacterized protein LOC111023182 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-10
Identity = 47/76 (61.84%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          MEKSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 54

Query: 61 DLIQDLRRGSSNDSSS 77
          DLIQDLRRGSSN  SS
Sbjct: 61 DLIQDLRRGSSNSDSS 54

[Close]

BLAST of CmoCh19G003920 vs. NCBI nr
Match: XP_016903560.1 (PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo] >KAA0038521.1 putative membrane lipoprotein [Cucumis melo var. makuwa] >TYK31115.1 putative membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09
Identity = 48/81 (59.26%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          M KSFTLIQTIATAGAFSAISFW  F                       F  ESARKDLG
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGF----------------------MFGRESARKDLG 59

Query: 61 DLIQDLRRG-SSNDSSSANPQ 81
          DLIQDLRRG S +DSSS  PQ
Sbjct: 61 DLIQDLRRGVSKSDSSSETPQ 59

[Close]

BLAST of CmoCh19G003920 vs. TAIR 10
Match: AT4G17085.1 (Putative membrane lipoprotein )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWCDFTSLSSTLMPHFFSGSLSSVRLASFFLESARKDLG 60
          M+KSF+LIQT+A +G FSA+S W  F                       F  ESARK+LG
Sbjct: 1  MQKSFSLIQTVAISGVFSAVSCWYGF----------------------MFGRESARKELG 54

Query: 61 DLIQDLRRGSSNDSSS 77
           LI++LRRG SN  S+
Sbjct: 61 GLIEELRRGGSNSDST 54

The following BLAST results are available for this feature:

BLAST of CmoCh19G003920 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G003920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0E3	6.5e-14	66.25	uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC1114380...	[more]
A0A6J1I859	3.2e-13	65.00	uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813...	[more]
A0A6J1DRK3	2.5e-10	61.84	uncharacterized protein LOC111023182 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7TAA3	2.1e-09	59.26	Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S4E6G4	2.1e-09	59.26	uncharacterized protein LOC103503490 OS=Cucumis melo OX=3656 GN=LOC103503490 PE=...	[more]

BLAST of CmoCh19G003920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931780.1	1.3e-13	66.25	uncharacterized protein LOC111438056 [Cucurbita moschata]	[more]
XP_022973256.1	6.6e-13	65.00	uncharacterized protein LOC111471813 [Cucurbita maxima] >KAG7011478.1 hypothetic...	[more]
XP_023553989.1	6.2e-11	62.96	uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]	[more]
XP_022156252.1	5.2e-10	61.84	uncharacterized protein LOC111023182 [Momordica charantia] >XP_022156260.1 uncha...	[more]
XP_016903560.1	4.4e-09	59.26	PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo] >KAA0038521.1 put...	[more]

BLAST of CmoCh19G003920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17085.1	1.2e-07	43.42	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38384:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 53..77 coord: 1..26
None	No IPR available	PANTHER	PTHR38384	MEMBRANE LIPOPROTEIN-RELATED	coord: 53..77 coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003920.1	CmoCh19G003920.1	mRNA