CmoCh19G003850 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CTGCATATCGAATCCTTCCTCCCGCCAAACCTCCCCAAAGCCCTAAGTCTGCTGGTCTCTTTTGAGTTCTTCTTCCAACTCTCTGCTTCACCTCATTGTCTGCAACTCCCTCTTCCCTTCCCACCACCATCTCCCTCCAATTCATACTTTTCTCCCACATTCTTACGCTTCTCCTTTATCCACTTCTCACTCTCTCAGGATGAGTTTTGCCGCTTATAGAATGATGCACTGCCCTACGGGCATCGAGAATTGTGATTCAGGCTTTATCACGCATTCTCGCTCCGATTTCGTACCCCGCGTCACTTCTCACGCCGACGACCTTGAGTCCGATTGGCCGCCGCGCCGAGAAATTGGTCCGGTTCCGAATCTCGTTGTCACCGCCGGTAATGTCCTTGAGGTATATGTTGTCAGGGTTCAAGAAGATGGTGGCAAAGAATCAAGAAGCTCTGGAGAAGTCAGACGGGGTGGCATTATGGATGGAGTCTCTGGGGCCTCGCTCGAGCTTGTTTGCCACTATAGGTATACTCCAAGTTTTGTGAATGTACGTTAGGAGTTTCGTGTTAGTATGTTCTTTGTTATAACTAGCTTGTCGAAACGTACACCATAGAGCAGCCTTTTGCGAGTTCCTCGATTCTGGGTCTTTTTATTGCGTCTCATTTTATACTTCTCATCAAACGAGTGACAAGTTTGCTGCTCGTTGGAAAGAAAAATTAATGTGACTAGCAATCTTGAGTAAAGGATATCCCTTGATTTATTTCTGGTAAGCACTTGCTATTTTTGTTTAGTGATAATTTACTTTTCTCGGGGCCTGAATTGCAGGTTGCACGGTAATGTTGAGTCCATGGTAATTTTGTCTAGTAGAGGAGGTGATGGTTCCAAGAAGAGAGATTCGATCATATTAGTCTTTAAAGAAGCAAAAATTTCAGTGCTAGAGTTTGATGATTCTATCCATAGTCTCCGTACAAGGTACGCTTTTTTCTTTCTCTTTCACTCTCTTGTGGAGCTTAGTCTCTTTTTATTTCATCAATGAAAAGTTTCGTCTGTTGTAAAAAAAAAGAAAAAAACATTATTGGCGAATTAGACTATCTTCTCTTTAAGTTATATATATAATTTGTGGAATGTAAAATCGAAAGACTGAAAGTGTAATTCATTCCAAATGTGCATGTTCCTAGTCTTTCTACATGCCCTCGATCGTTGTGCCCTGTCTAGTATCTTGACCAACAATTTTCTTGGGCTTTAATTTATTATGTGACTGATATCTTGGCAACATAATTGTGTGTTATCCATGACCACCACGTAATTATCCTGCCCCTCCAAATTATTTCCGAATTGGTTCCTTCCTCCACCGGACAGATGTACAAATGTACTATGCTTGGAAAGAACTTGTGCAAGATGATACTCTGGTTATTCATTATTTAGCTGTCTTTTCATCGAAAAACTTATTTTAGTTGTCTAATTTTCTTTGGCATTTCACAATTACTATTGAGTGGAAATTTTCATTTGTAGCTCAATGCATTGCTTTGAGGGTCCACAATGGCTTCATTTGAAAAGAGGTCGTGAATCATTTGCAAGAGGTCCAGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGAGGAGTTCTTGTTTATGGTTTGCAAATGATAATACTTAAGGCTTCTCAGGTGTTTTTTGCCTTTCACACTTTTTTATTTGGATGTGCATGACAACTTTATGCCATGCTTTGTTGACGTGTAGTTCTTAATATCTTTTATAATATATTGGATAGAAAGAGAAACTATGTTGTCTTAATAAGTAATTCTATCCACCGCCTTGTGTTTACCACTATCCTTCAATTAAGTTTCTTGGTTAGCATTGAAATCTACTAAAGTTGACTTTCCTTACCCATGTTTGCACGTTGAGTTAGATCAGATGTGACTAGTAGTTTTTAGTGATGATGGTAGTCAAACTCAAATTAATGAAGGTGATATATGGAGCAAATGTGTAGAAGATTTGTTTGATTATACTTTTGAGCTATTTTGGTAAACCTTAATGGACATGGATGATTGCCTCTATCTTTTTCATAGCGAAGAAGAAATGGAGATTTCCAATGGCTGCTATTTATGGACCCAAGATGGATTGGAATAACATCTGATAGACAATAAACAATGTTATGATGTCTCTCGAAAGTGATTATGGAGAAGCTTAAGAGACTTTGTATGTGGATGGACTTCCCTAGACATTGGCCAAAATTTAGCGAAGTAGAGCGTCACCTCACTGCCTGGTTTAGGTGTGGGCAAGCTTAACACTAGAAACAGTAGCCTTTTTCAACTAAAGGGGGCTGGAGATTCTTAATTGATCCCAATGCTCTTGGAAGAAGGGTTATTGTTAATAAGTATAAATTGTCTTGGATCAGCTGGATATATATATTTTTTTGATAAGAATGAGTAAAAAAATAAAAGAATACGAGGGCATACAAAATTCCATGGAAGGGATCCCAACTAAAGAAAGGGGCTCAAATCATGCAAAATAATGCCTATAAAATTACTACAAAAGGTATTTGAAATCTAAGTCCAAGGAGAAACATGAAATCTAAAAAGAGACCAAACATCACTTGGATCTCTCTCCAAACCTTTAAAAGCTCTATTATTCCTCTCACTCTAAAGATCCGGATAGTATACACCCCAACAAGCCATGAAAATCGGTTTTTCTCATGAAAAGACGGATGGAGGAGGAACTCCCCATTCATATCATGTCCCTATAATGGGCAAGCAAGAAGTTGAATGTTTGAAAGAAAAAAAATTCCAAATGGCCCCGCAAACTAACATCTCCAAAGAATATGGTCCAGGTCTTTGCCTTTCGACTGAGAATACAACAAAACAAGCCAAACTTGCCAGGTACAGACATTCACTTTCTTTGCGATCTTAATCCTCCAAAGAGGGAAAAAAAAAAAAAACAAAAAACTCACTAGTGGGAGAAGTGTCTATCAAGCAACAGAAGAAAGATTTACAAGAGATCCCTCTTAAGGGTGGGGCTCTAGACACAAACATTCCTTCTCCCACGCCTAAAATCAAACTCCCCTATCAAGGACGAGAGACAACATACTTTGCTTTCCTGTTGGACAAGTGACTGAACCCAAAAGATTCATTGGAATGTTGTGCCCACCCCACCCTTCCAAACGTTTTAGAGGTTCTTGGTCTACTATTGCTAAGTGTTGCCTTTTAGTGGACAAGTGGTATACTCGTAATGTTGGCAAAGGAAAGAAACTTCGGATTTTAGATTTTTTTTGGATTAGAGATGCTCCCCTTAAAGTTTCCTATCCAAGGTTGTAGGTAGTGGTTAAGTCGATTTGGTCGTCTATTCTGAAGGTTTGGGTTGGAGCAGTTAGTAGTTAGGTCTTGAAATTTAGAAGGAATCTCACAAACACCTCCTACTTATTTGAAGTCGATTTAATTTGTCATTACAAGAAGAGGATTATTTCTAAGAGGAACCGTTTGGTGGCTGGTATTGGGAGTGATTCCTCTATTTTTCTGGGTTCTTTTGCTCACTATTTGATAGGTAAACTGACAGATATTGTGGCTCATTTAGCCTTGGTTGAGGAGTTTTTGAATAGACTTGAATGGAGATTATCATATTTGGATAGTATCCCTTATGGTATTTTGAATCTTGAATCGTGTTTGGAGTACTTCAATGGGTAA CTGCATATCGAATCCTTCCTCCCGCCAAACCTCCCCAAAGCCCTAAGTCTGCTGGTCTCTTTTGAGTTCTTCTTCCAACTCTCTGCTTCACCTCATTGTCTGCAACTCCCTCTTCCCTTCCCACCACCATCTCCCTCCAATTCATACTTTTCTCCCACATTCTTACGCTTCTCCTTTATCCACTTCTCACTCTCTCAGGATGAGTTTTGCCGCTTATAGAATGATGCACTGCCCTACGGGCATCGAGAATTGTGATTCAGGCTTTATCACGCATTCTCGCTCCGATTTCGTACCCCGCGTCACTTCTCACGCCGACGACCTTGAGTCCGATTGGCCGCCGCGCCGAGAAATTGGTCCGGTTCCGAATCTCGTTGTCACCGCCGGTAATGTCCTTGAGGTATATGTTGTCAGGGTTCAAGAAGATGGTGGCAAAGAATCAAGAAGCTCTGGAGAAGTCAGACGGGGTGGCATTATGGATGGAGTCTCTGGGGCCTCGCTCGAGCTTGTTTGCCACTATAGGTTGCACGGTAATGTTGAGTCCATGGTAATTTTGTCTAGTAGAGGAGGTAAACTGACAGATATTGTGGCTCATTTAGCCTTGGTTGAGGAGTTTTTGAATAGACTTGAATGGAGATTATCATATTTGGATAGTATCCCTTATGGTATTTTGAATCTTGAATCGTGTTTGGAGTACTTCAATGGGTAA ATGAGTTTTGCCGCTTATAGAATGATGCACTGCCCTACGGGCATCGAGAATTGTGATTCAGGCTTTATCACGCATTCTCGCTCCGATTTCGTACCCCGCGTCACTTCTCACGCCGACGACCTTGAGTCCGATTGGCCGCCGCGCCGAGAAATTGGTCCGGTTCCGAATCTCGTTGTCACCGCCGGTAATGTCCTTGAGGTATATGTTGTCAGGGTTCAAGAAGATGGTGGCAAAGAATCAAGAAGCTCTGGAGAAGTCAGACGGGGTGGCATTATGGATGGAGTCTCTGGGGCCTCGCTCGAGCTTGTTTGCCACTATAGGTTGCACGGTAATGTTGAGTCCATGGTAATTTTGTCTAGTAGAGGAGGTAAACTGACAGATATTGTGGCTCATTTAGCCTTGGTTGAGGAGTTTTTGAATAGACTTGAATGGAGATTATCATATTTGGATAGTATCCCTTATGGTATTTTGAATCTTGAATCGTGTTTGGAGTACTTCAATGGGTAA MSFAAYRMMHCPTGIENCDSGFITHSRSDFVPRVTSHADDLESDWPPRREIGPVPNLVVTAGNVLEVYVVRVQEDGGKESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMVILSSRGGKLTDIVAHLALVEEFLNRLEWRLSYLDSIPYGILNLESCLEYFNG Homology
BLAST of CmoCh19G003850 vs. ExPASy Swiss-Prot
Match: Q9FGR0 (Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CPSF160 PE=1 SV=2) HSP 1 Score: 163.3 bits (412), Expect = 2.4e-39 Identity = 80/128 (62.50%), Postives = 101/128 (78.91%), Query Frame = 0
BLAST of CmoCh19G003850 vs. ExPASy Swiss-Prot
Match: Q7XWP1 (Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0252200 PE=3 SV=2) HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27 Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = 0
BLAST of CmoCh19G003850 vs. ExPASy TrEMBL
Match: A0A6J1EY93 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439584 PE=4 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 1.3e-64 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
BLAST of CmoCh19G003850 vs. ExPASy TrEMBL
Match: A0A6J1I7X9 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472174 PE=4 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 1.9e-63 Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0
BLAST of CmoCh19G003850 vs. ExPASy TrEMBL
Match: A0A5A7U6U4 (Cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00480 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 2.0e-57 Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0
BLAST of CmoCh19G003850 vs. ExPASy TrEMBL
Match: A0A5D3C8Q8 (Cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00350 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 2.0e-57 Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0
BLAST of CmoCh19G003850 vs. ExPASy TrEMBL
Match: A0A1S3B4E8 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485885 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 2.0e-57 Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0
BLAST of CmoCh19G003850 vs. TAIR 10
Match: AT5G51660.1 (cleavage and polyadenylation specificity factor 160 ) HSP 1 Score: 163.3 bits (412), Expect = 1.7e-40 Identity = 80/128 (62.50%), Postives = 101/128 (78.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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