CmoCh19G003430 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G003430
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCyclopropane-fatty-acyl-phospholipid synthase
LocationCmo_Chr19: 2867564 .. 2868897 (+)
RNA-Seq ExpressionCmoCh19G003430
SyntenyCmoCh19G003430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTACTCATGTGCCATCATTAAGGTTCGCATAACCAACTTTTATTTAGTAAAAATTTGATAATCTATATGATGATTTGCATTGTTTTCTTAACAAAGAGGGAAGATGAAGACTTGAGGATTGCACAATTGATGAAAATCTCTATTCTTATTGAAAAGGTGATTATTATATTAAATTGGTAATTTATAATTGGCAGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTGTTCGGGGTTCAATTAATTTTTTTTTTTTTAACTTTTTAGTGATAATTAATTTTTTTAATTACTCTTTATTTATTATTATTATTATTATTATTATTTTGCATTAGTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAAATAATTCATTTATGTTCTTCATTTTCAACCATAATTTTAACAATTAATAATGAAAAAAATCCTTTGGGTACCATGTGGAGCACTTGGAAAATATTGGAATTCATTACTATCAAACATTGAGATGTTGGAGAAAGAATTTCTTGAACAATTAACGGTAAGAAACCAAACCATTATTATAATAAATGGTTTTGAATTCCAATCTAATTCATATTTTGTTTCAGCAAAATACTTGAACTCGTGTTCGATCAAGGTTTCATACGAACTTGGGAATACTATTTTGATTACTGTGCTGCTGGGTTTAAATCACAAACCCTTGAAGATTATCAGGTAATCATATTTTTACGTAAGATATGAAATTAATGTTAAGAATTGTAACCGCCTTAGTTTTCTAGAGATCTAAAGTCGCTACAGTATGTACGACATAACTTTTCATGCATAAATATTTACCAACATTTTCATAAAACAATTTCATAAACTTAGAAATATTAGATAAAAGAAAATAGATATTAAAAGTGACAATGTCCTATTGTAACCTAAGGTCTAAGAATTTAAATACAACTGTTATATGCATGTGTCATAATCTTTACTTGCAATATCCTCGTCAGCTATACATGAATCGGAAATTTTATATATATATCAGACTAAATATGTAATTGAAATATTTAAATTAAAATTATATAATGGCAGATTGTGTTTTCCAGGGAGGGTAATGCGGCATTCAACAACTTTGAAGAATCCATATGAAGAAATAGCTTCAGTATTCAACAACAACTTTGAAGAATTGCCTTTCACCATATTGAATTTCTTTCTTTGA

mRNA sequence

ATGATGTACTCATGTGCCATCATTAAGAGGGAAGATGAAGACTTGAGGATTGCACAATTGATGAAAATCTCTATTCTTATTGAAAAGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTACAAAATACTTGAACTCGTGTTCGATCAAGGTTTCATACGAACTTGGGAATACTATTTTGATTACTGTGCTGCTGGGGAGGGTAATGCGGCATTCAACAACTTTGAAGAATCCATATGAAGAAATAGCTTCAGTATTCAACAACAACTTTGAAGAATTGCCTTTCACCATATTGAATTTCTTTCTTTGA

Coding sequence (CDS)

ATGATGTACTCATGTGCCATCATTAAGAGGGAAGATGAAGACTTGAGGATTGCACAATTGATGAAAATCTCTATTCTTATTGAAAAGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTACAAAATACTTGAACTCGTGTTCGATCAAGGTTTCATACGAACTTGGGAATACTATTTTGATTACTGTGCTGCTGGGGAGGGTAATGCGGCATTCAACAACTTTGAAGAATCCATATGAAGAAATAGCTTCAGTATTCAACAACAACTTTGAAGAATTGCCTTTCACCATATTGAATTTCTTTCTTTGA

Protein sequence

MMYSCAIIKREDEDLRIAQLMKISILIEKRDDRSSWHEFIEDFFGCCESVLEENGLLFILVPDEEHRLSSGFIKEYIFPGECVPLLSRITTAMATKYLNSCSIKVSYELGNTILITVLLGRVMRHSTTLKNPYEEIASVFNNNFEELPFTILNFFL
Homology
BLAST of CmoCh19G003430 vs. ExPASy TrEMBL
Match: A0A6J1EXS1 (uncharacterized protein LOC111439562 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439562 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 92/277 (33.21%), Postives = 114/277 (41.16%), Query Frame = 0

Query: 1   MMYSCAIIKREDEDLRIAQLMKISILIEKR---------DDRSSW--------------- 60
           MMYSCAI KREDEDLRIAQL KIS+LI+K          D    W               
Sbjct: 176 MMYSCAIFKREDEDLRIAQLRKISVLIKKARINKKHKVLDIGCGWGTLAIEIVKQTGCHC 235

Query: 61  -------------------------------------------------------HEFIE 120
                                                                  HEF+E
Sbjct: 236 TGITLSKQQLKYAQKRVQDLALQDHIEFLLCDYRELSSTTKYDRILSCRMIEAVGHEFME 295

Query: 121 DFFGCCESVLEENGLL---FILVPD---EEHRLSSGFIKEYIFPGECVPLLSRITTAMAT 148
           DFFG CESVL++NGLL   FI VPD   EE+RLS+GFIKEYIF G C+P LSRITTAM +
Sbjct: 296 DFFGSCESVLQDNGLLVLQFISVPDESYEEYRLSAGFIKEYIFQGGCLPSLSRITTAMTS 355

BLAST of CmoCh19G003430 vs. ExPASy TrEMBL
Match: A0A6J1IB60 (uncharacterized protein LOC111473008 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473008 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19
Identity = 75/180 (41.67%), Postives = 83/180 (46.11%), Query Frame = 0

Query: 1   MMYSCAIIKREDEDLRIAQLMKISILIEKR---------DDRSSW--------------- 60
           MMYSCAI KREDEDLRIAQL KISILI+K          D    W               
Sbjct: 176 MMYSCAIFKREDEDLRIAQLRKISILIKKARINKKHKVLDIGCGWGTLAIEIVKQTGCHC 235

Query: 61  -------------------------------------------------------HEFIE 96
                                                                  HEF+E
Sbjct: 236 TGITLSKQQLKYAQKRVQDLGLQDHIEFLLCDYRELSSTTKYDRILSCGMIEAVGHEFME 295

BLAST of CmoCh19G003430 vs. ExPASy TrEMBL
Match: A0A6J1ICH0 (uncharacterized protein LOC111472470 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472470 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19
Identity = 75/180 (41.67%), Postives = 83/180 (46.11%), Query Frame = 0

Query: 1   MMYSCAIIKREDEDLRIAQLMKISILIEKR---------DDRSSW--------------- 60
           MMYSCAI KREDEDLRIAQL KISILI+K          D    W               
Sbjct: 176 MMYSCAIFKREDEDLRIAQLRKISILIKKARINKKHKVLDIGCGWGTLAIEIVKQTGCHC 235

Query: 61  -------------------------------------------------------HEFIE 96
                                                                  HEF+E
Sbjct: 236 TGITLSKQQLKYAQKRVQDLGLQDHIEFLLCDYRELSSTTKYDRILSCGMIEAVGHEFME 295

BLAST of CmoCh19G003430 vs. ExPASy TrEMBL
Match: A0A6J1IB85 (LOW QUALITY PROTEIN: uncharacterized protein LOC111473548 OS=Cucurbita maxima OX=3661 GN=LOC111473548 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.4e-19
Identity = 75/180 (41.67%), Postives = 83/180 (46.11%), Query Frame = 0

Query: 1   MMYSCAIIKREDEDLRIAQLMKISILIEKR---------DDRSSW--------------- 60
           MMYSCAI KREDEDLRIAQL KISILI+K          D    W               
Sbjct: 100 MMYSCAIFKREDEDLRIAQLRKISILIKKARINKKHKVLDMGCGWGTLAIEIVKQXGCHC 159

Query: 61  -------------------------------------------------------HEFIE 96
                                                                  HEF+E
Sbjct: 160 TGITLSKQQLKYAQKRVQDLGLQDHIEFLLCDYRELSSTTKYDRILSCGMIEAVGHEFME 219

BLAST of CmoCh19G003430 vs. ExPASy TrEMBL
Match: A0A5D3BBE9 (Cyclopropane-fatty-acyl-phospholipid synthase-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00150 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.9e-18
Identity = 70/179 (39.11%), Postives = 80/179 (44.69%), Query Frame = 0

Query: 1   MMYSCAIIKREDEDLRIAQLMKISILIEKR---------DDRSSW--------------- 60
           M YSCAI KREDEDLR+AQL KIS+LIEK          D    W               
Sbjct: 1   MTYSCAIFKREDEDLRVAQLRKISLLIEKAKIDKNHHVLDIGCGWGSLAIELVKQTGCHC 60

Query: 61  -------------------------------------------------------HEFIE 95
                                                                  HEF+E
Sbjct: 61  TAITLSKEQLKYAEQKVKVLGLQDNIKFHLCDYRQLSNTLKYDRIISCGMLECVGHEFME 120

BLAST of CmoCh19G003430 vs. TAIR 10
Match: AT3G23530.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-15
Identity = 60/180 (33.33%), Postives = 77/180 (42.78%), Query Frame = 0

Query: 1   MMYSCAIIKREDEDLRIAQLMKISILIEK------------------------------- 60
           M YS A+ K +DEDLR AQ+ KIS+LI+K                               
Sbjct: 595 MTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIEVVRRTGCKY 654

Query: 61  ------------------------------RDDR------------------SSWHEFIE 96
                                         RD R                  +  HEF+E
Sbjct: 655 TGITLSIEQLKYAEEKVKEAGLQDWITFELRDYRQLSDAQKYDRIISCEMLEAVGHEFME 714

BLAST of CmoCh19G003430 vs. TAIR 10
Match: AT3G23470.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-14
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 37  HEFIEDFFGCCESVLEENG---LLFILVPD---EEHRLSSGFIKEYIFPGECVPLLSRIT 96
           HEF++ FF CCE  L ENG   L F  +P+   +E RL+SGFI EYIFPG C+P L+R+T
Sbjct: 302 HEFMDKFFSCCEDALAENGIFVLQFTAIPEALYDESRLTSGFITEYIFPGGCLPSLARVT 361


HSP 2 Score: 40.8 bits (94), Expect = 1.2e-03
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 1   MMYSCAIIKREDEDLRIAQLMKISILIEKRDDRSSWHEFIEDFFGC 47
           MMYS AI K E+ED R AQ+ KIS+LIEK     + HE +E   GC
Sbjct: 187 MMYSSAIFKSENEDPRTAQMRKISLLIEKARIEKN-HEVLE--MGC 229

BLAST of CmoCh19G003430 vs. TAIR 10
Match: AT3G23510.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 74.3 bits (181), Expect = 9.5e-14
Identity = 58/180 (32.22%), Postives = 76/180 (42.22%), Query Frame = 0

Query: 1   MMYSCAIIKREDEDLRIAQLMKISILIEK------------------------------- 60
           M YS A+ K +DEDLR AQ+ KIS+LI+K                               
Sbjct: 595 MTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIEVVRRTGCKY 654

Query: 61  ------------------------------RDDR------------------SSWHEFIE 96
                                         RD R                  +  HEF+E
Sbjct: 655 TGITLSIEQLKYAEEKVKEAGLQDRITFELRDYRQLSDAHKYDRIISCEMLEAVGHEFME 714

BLAST of CmoCh19G003430 vs. TAIR 10
Match: AT3G23480.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 37  HEFIEDFFGCCESVLEENG---LLFILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 96
           H+F+E FF  CE+ L E+G   L F  +P+E   E RL+SGFI EYIFPG C+P L+R+T
Sbjct: 300 HKFMETFFSHCEAALAEDGIFVLQFTAIPEELYDESRLTSGFITEYIFPGGCLPSLARVT 359


HSP 2 Score: 40.0 bits (92), Expect = 2.0e-03
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 1   MMYSCAIIKREDEDLRIAQLMKISILIEKRDDRSSWHEFIEDFFGC 47
           MMYS A+ K E+E+LR AQ+ KI +LIEK  D+   +E +E   GC
Sbjct: 186 MMYSSAVFKSENENLRTAQMRKIHLLIEK--DKEEPYEVLE--IGC 227

BLAST of CmoCh19G003430 vs. TAIR 10
Match: AT3G23480.2 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 37  HEFIEDFFGCCESVLEENG---LLFILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 96
           H+F+E FF  CE+ L E+G   L F  +P+E   E RL+SGFI EYIFPG C+P L+R+T
Sbjct: 279 HKFMETFFSHCEAALAEDGIFVLQFTAIPEELYDESRLTSGFITEYIFPGGCLPSLARVT 338

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EXS14.0e-2033.21uncharacterized protein LOC111439562 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1IB602.0e-1941.67uncharacterized protein LOC111473008 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1ICH02.0e-1941.67uncharacterized protein LOC111472470 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IB853.4e-1941.67LOW QUALITY PROTEIN: uncharacterized protein LOC111473548 OS=Cucurbita maxima OX... [more]
A0A5D3BBE94.9e-1839.11Cyclopropane-fatty-acyl-phospholipid synthase-like isoform X3 OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
AT3G23530.15.0e-1533.33Cyclopropane-fatty-acyl-phospholipid synthase [more]
AT3G23470.11.5e-1455.38Cyclopropane-fatty-acyl-phospholipid synthase [more]
AT3G23510.19.5e-1432.22Cyclopropane-fatty-acyl-phospholipid synthase [more]
AT3G23480.16.2e-1353.85Cyclopropane-fatty-acyl-phospholipid synthase [more]
AT3G23480.26.2e-1353.85Cyclopropane-fatty-acyl-phospholipid synthase [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 30..109
e-value: 6.2E-8
score: 34.1
NoneNo IPR availablePANTHERPTHR43675:SF22SUBFAMILY NOT NAMEDcoord: 1..29
NoneNo IPR availablePANTHERPTHR43675:SF22SUBFAMILY NOT NAMEDcoord: 37..96
IPR026669Arsenite methyltransferase-likePANTHERPTHR43675ARSENITE METHYLTRANSFERASEcoord: 37..96
IPR026669Arsenite methyltransferase-likePANTHERPTHR43675ARSENITE METHYLTRANSFERASEcoord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G003430.1CmoCh19G003430.1mRNA