CmoCh19G003420 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G003420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cyclopropane-fatty-acyl-phospholipid synthase
Location	Cmo_Chr19: 2865133 .. 2866663 (+)
RNA-Seq Expression	CmoCh19G003420
Synteny	CmoCh19G003420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGGTGAGCTTAATTACTTCATTTCTTCCTAATCCTAATTAAGGTTCTTAATCATCGCCCTCGTTCATGCGCACCTTCTCTTTTGCACCTTCTCATTGCTAATAAGGATACAAATTCTTCTAATACAACACCAAACAAGACAATAAGGTAAATATGAATTATAAGACATTTTAATTACGAGTTTCATTTTTGAAGGAACTTAATTGTAACACTCCACCACTAACAAATATTATCAATTTTAGCGTGTTACGTATCGTCTTGTTACATATCGTCGTTAGACTCACAGTTTTAAAATTTATTTGTTACGGAGAGGTTTTCACTCCTTTATTAAAAAAAAAATGTATGTGTGTATCCTATCCACTCCCTTAGGGTCCAGCATCCTCGCTAGCACACCGTTCGGTGTCTTGCTCTGATACTATTTGTAATGGCCCATGACCACCACTAACAAATATTGTCTGTTTTAGCCCGGTTATGTATCGCCGTTCGCTTCATGGTTTTGAAACGTGTCTGCTTAGGAGAAATTTTCACACCCATATAAGAAATGTTTCGTTTTCCTATCCAATGGATGTGGATCTCACATTAAAAGTTTTTAATAGGTTCTTGAATTTACATTTTTGTGTTTCTAATATATTCATGAACTTTAACAAGTGTTTAATAAGTTTTGGAAATGACCCACTATCCGAATCTGTCAAAACAAATAAAGAGAGCATTAGCCTTCAATTCTCTCTGTTGTTATTATGAAAAAACATACCTCTCATGAGTATATATAGTAGAGAAAGTACTAACTAGCTTCGTAAACTTTCTCCTCAAGTTAAGAATTACTGAACGACGATCTTCATCGTTAAAGCATAAAACTTGTCTATCTACTACCAATTCTCCTATAGTTACTCCATAGGTTAGTAACTTATTCTATTATGTCTACTAACAATACCGTTAAAAGTGAGTGACTTACTTAAAAGCTCGTAATAAGTCTCTAAACATTCCATCTTTTATTTTCTTCAAACTTTTGATTTTATATTAATTCATCTATAAACTAGAAAATTTGTTAAAGTTCATATGAATGGAAAGTTACAATAAATAAGTCATATACTTATTCAATATTTTTAAAATTGAATTTGTTAAACACGAACATAAAAATTAATTTAGGACAACAATAATAACATTGAACTGATAATTTTTTAATGTTGGTAATGGTGATCTACTTTTTGTAGGGGATGGAGGTCTCCTCCACTGTTTACCGCAACTATTGCATCTGCAAAGTATTTCTTTCAGCATACTTTAAGAAAGAACACCATTGCACAAGCTCGTAAAAATATTTCTCGTCATTATGACCTGGTAGTATATGGATGCATCAGTTTCATAGTCTTTTTCTTTTCGTCTTTAGATTGATGATATCTCTCCAATTTTATTCGTATTCAATCAAAAGATAACTAGAATAACGTTGAAAAATAACAAACAAAAGAAAGGTAAGATAACTCAAATAAGTATGAGATTGTAG

mRNA sequence

ATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGGTTCTTAATCATCGCCCTCGTTCATGCGCACCTTCTCTTTTGCACCTTCTCATTGCTAATAAGGATACAAATTCTTCTAATACAACACCAAACAAGACAATAAGGGGATGGAGGTCTCCTCCACTGTTTACCGCAACTATTGCATCTGCAAAGTATTTCTTTCAGCATACTTTAAGAAAGAACACCATTGCACAAGCTCGTAAAAATATTTCTCGTCATTATGACCTGATTGATGATATCTCTCCAATTTTATTCGTATTCAATCAAAAGATAACTAGAATAACGTTGAAAAATAACAAACAAAAGAAAGGTAAGATAACTCAAATAAGTATGAGATTGTAG

Coding sequence (CDS)

ATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGGTTCTTAATCATCGCCCTCGTTCATGCGCACCTTCTCTTTTGCACCTTCTCATTGCTAATAAGGATACAAATTCTTCTAATACAACACCAAACAAGACAATAAGGGGATGGAGGTCTCCTCCACTGTTTACCGCAACTATTGCATCTGCAAAGTATTTCTTTCAGCATACTTTAAGAAAGAACACCATTGCACAAGCTCGTAAAAATATTTCTCGTCATTATGACCTGATTGATGATATCTCTCCAATTTTATTCGTATTCAATCAAAAGATAACTAGAATAACGTTGAAAAATAACAAACAAAAGAAAGGTAAGATAACTCAAATAAGTATGAGATTGTAG

Protein sequence

MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIASAKYFFQHTLRKNTIAQARKNISRHYDLIDDISPILFVFNQKITRITLKNNKQKKGKITQISMRL

Homology

[Close]

BLAST of CmoCh19G003420 vs. ExPASy TrEMBL
Match: A0A6J1IFX4 (uncharacterized protein LOC111472470 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472470 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 74/121 (61.16%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 1   MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
           MDKEEGLLNLIL               LLIANKDTNSSNT      RGW SPPLFTATIA
Sbjct: 96  MDKEEGLLNLIL---------------LLIANKDTNSSNTR-----RGWWSPPLFTATIA 155

Query: 61  SAKYFFQHTLRKNTIAQARKNISRHYDLIDDISPILFVFNQKITRITLKNNKQKKGKITQ 120
           SAKYFFQHTLRKNTIAQARKNISRHYDL +D   +     +KI+ +  K    KK K+  
Sbjct: 156 SAKYFFQHTLRKNTIAQARKNISRHYDLRED-EDLRIAQLRKISILIKKARINKKHKVLD 195

Query: 121 I 122
           I
Sbjct: 216 I 195

[Close]

BLAST of CmoCh19G003420 vs. ExPASy TrEMBL
Match: A0A6J1IA38 (uncharacterized protein LOC111473008 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473008 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 74/121 (61.16%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 1   MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
           MDKEEGLLNLIL               LLIANKDTNSSNT      RGW SPPLFTATIA
Sbjct: 96  MDKEEGLLNLIL---------------LLIANKDTNSSNTR-----RGWWSPPLFTATIA 155

Query: 61  SAKYFFQHTLRKNTIAQARKNISRHYDLIDDISPILFVFNQKITRITLKNNKQKKGKITQ 120
           SAKYFFQHTLRKNTIAQARKNISRHYDL +D   +     +KI+ +  K    KK K+  
Sbjct: 156 SAKYFFQHTLRKNTIAQARKNISRHYDLRED-EDLRIAQLRKISILIKKARINKKHKVLD 195

Query: 121 I 122
           I
Sbjct: 216 I 195

[Close]

BLAST of CmoCh19G003420 vs. ExPASy TrEMBL
Match: A0A6J1ICH0 (uncharacterized protein LOC111472470 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472470 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.3e-23
Identity = 66/92 (71.74%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1   MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
           MDKEEGLLNLIL               LLIANKDTNSSNT      RGW SPPLFTATIA
Sbjct: 96  MDKEEGLLNLIL---------------LLIANKDTNSSNTR-----RGWWSPPLFTATIA 155

Query: 61  SAKYFFQHTLRKNTIAQARKNISRHYDLIDDI 93
           SAKYFFQHTLRKNTIAQARKNISRHYDL +++
Sbjct: 156 SAKYFFQHTLRKNTIAQARKNISRHYDLSNEL 167

[Close]

BLAST of CmoCh19G003420 vs. ExPASy TrEMBL
Match: A0A6J1IB60 (uncharacterized protein LOC111473008 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473008 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23
Identity = 66/92 (71.74%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1   MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
           MDKEEGLLNLIL               LLIANKDTNSSNT      RGW SPPLFTATIA
Sbjct: 96  MDKEEGLLNLIL---------------LLIANKDTNSSNTR-----RGWWSPPLFTATIA 155

Query: 61  SAKYFFQHTLRKNTIAQARKNISRHYDLIDDI 93
           SAKYFFQHTLRKNTIAQARKNISRHYDL +++
Sbjct: 156 SAKYFFQHTLRKNTIAQARKNISRHYDLNNEL 167

[Close]

BLAST of CmoCh19G003420 vs. ExPASy TrEMBL
Match: A0A6J1IB85 (LOW QUALITY PROTEIN: uncharacterized protein LOC111473548 OS=Cucurbita maxima OX=3661 GN=LOC111473548 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 65/92 (70.65%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
          MDKEEGLLNLIL               LLIANKDTNSSNT      RGW SPPLFTATIA
Sbjct: 20 MDKEEGLLNLIL---------------LLIANKDTNSSNTR-----RGWWSPPLFTATIA 79

Query: 61 SAKYFFQHTLRKNTIAQARKNISRHYDLIDDI 93
          S KYFFQHTLRKNTIAQARKNISRHYDL +++
Sbjct: 80 STKYFFQHTLRKNTIAQARKNISRHYDLSNEL 91

[Close]

BLAST of CmoCh19G003420 vs. TAIR 10
Match: AT3G23510.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-15
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1   MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
           +DKE GLLNLI++               LIAN+DT S+ T      RGW +P   TA +A
Sbjct: 514 VDKESGLLNLIMI---------------LIANRDTKSNLTKK----RGWWTPMFLTAGLA 573

Query: 61  SAKYFFQHTLRKNTIAQARKNISRHYDLIDDI 93
           SAKYF +H  R+NT+ QAR+NISRHYDL +++
Sbjct: 574 SAKYFLKHVSRQNTLTQARRNISRHYDLSNEL 586

[Close]

BLAST of CmoCh19G003420 vs. TAIR 10
Match: AT3G23530.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 77.8 bits (190), Expect = 6.9e-15
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1   MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
           +DKE GLLNLI++               LIAN+DT S+ +      RGW +P   TA +A
Sbjct: 514 VDKESGLLNLIMI---------------LIANRDTKSNLSKK----RGWWTPMFLTAGLA 573

Query: 61  SAKYFFQHTLRKNTIAQARKNISRHYDLIDDI 93
           SAKYF +H  R+NT+ QAR+NISRHYDL +++
Sbjct: 574 SAKYFLKHVSRQNTLTQARRNISRHYDLSNEL 586

[Close]

BLAST of CmoCh19G003420 vs. TAIR 10
Match: AT3G23480.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1   MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
           +DK+ GLLNLI++               LIAN+D NS  +   K  RGW +P   TA++A
Sbjct: 102 VDKDSGLLNLIMI---------------LIANRDLNSRKSNLAKK-RGWWTPVFLTASLA 161

Query: 61  SAKYFFQHTLRKNTIAQARKNISRHYDLIDD 92
           SA Y+ +H  R+NT+ QAR+N+S HYDL ++
Sbjct: 162 SATYYLKHVCRQNTLTQARRNVSSHYDLSNE 176

[Close]

BLAST of CmoCh19G003420 vs. TAIR 10
Match: AT3G23470.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-13
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 1   MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
           +DK+ GLLNLI++               LIAN+D  S  +   K  RGW +P   TA +A
Sbjct: 103 VDKDSGLLNLIMI---------------LIANRDQRSPKSNLVKK-RGWWTPVFLTAGLA 162

Query: 61  SAKYFFQHTLRKNTIAQARKNISRHYDLIDD 92
           S KY+ +H L++NT+ QARKNIS HYDL ++
Sbjct: 163 SVKYYLKHVLKQNTLTQARKNISSHYDLSNE 177

[Close]

BLAST of CmoCh19G003420 vs. TAIR 10
Match: AT3G23460.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-10
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 1   MDKEEGLLNLILVLNHRPRSCAPSLLHLLIANKDTNSSNTTPNKTIRGWRSPPLFTATIA 60
           ++KE GLLNLI++               LIA+K+ NS+        RG  +P   T  ++
Sbjct: 92  VNKETGLLNLIMI---------------LIASKELNSNLAEK----RGRWTPIFLTTGLS 151

Query: 61  SAKYFFQHTLRKNTIAQARKNISRHYDLIDDISPI 96
           SAK+F +H  R+N + QAR+NISRHYDL +++  I
Sbjct: 152 SAKHFLKHLYRQNNLTQARRNISRHYDLSNELFTI 167

The following BLAST results are available for this feature:

BLAST of CmoCh19G003420 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G003420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IFX4	1.1e-23	61.16	uncharacterized protein LOC111472470 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IA38	1.1e-23	61.16	uncharacterized protein LOC111473008 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ICH0	5.3e-23	71.74	uncharacterized protein LOC111472470 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IB60	7.0e-23	71.74	uncharacterized protein LOC111473008 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IB85	1.6e-22	70.65	LOW QUALITY PROTEIN: uncharacterized protein LOC111473548 OS=Cucurbita maxima OX...	[more]

BLAST of CmoCh19G003420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23510.1	2.4e-15	47.83	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23530.1	6.9e-15	46.74	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23480.1	1.7e-13	42.86	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23470.1	2.9e-13	43.96	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23460.1	6.7e-10	38.95	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026669	Arsenite methyltransferase-like	PANTHER	PTHR43675	ARSENITE METHYLTRANSFERASE	coord: 25..92
None	No IPR available	PANTHER	PTHR43675:SF10	CYCLOPROPANE FATTY ACID SYNTHASE	coord: 25..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003420.1	CmoCh19G003420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0003824	catalytic activity