CmoCh19G003400 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGGCACGTAATGTTTTGTCTCTAATAGAAAAAGGAACACGCCTTTTTATTACAAGATTTCTTGGTCAATACATATCCACCGGATCGTTAACGTGAGCCAACACGATACAATATTTATGTGTTTGTTTTAATGAGAATTTATATTGCTTATAATAAATTTAATGACAGTAATATGAAGATGGGGGAGAAATATTTACCTTTGAGGGAACTGTAAGCAACAGCTTCTAACGTAAGGTTGTTTTAAAAGTTCACATCCCTCGTTTTATTGGAAGGCAATTTAATTATTTATTTAATTATTATTATTTTTTTAAAAAGTTGTTGAAAAAAAAAAGATAAAATATAATTTATTTTTACGATTACGAGAGAAGCTAGACTTGGGGCTTGCAGGTGCATATATCAATGGAGAATTTTCATTAATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGGTGAGCTTAATTACTTCATTTCTTCCTAATCCTAATTAAGGTTCTTAATCATCGCCCTCGTTCATGCGCACCTTCTCTTTTGCACCTTCTCATTGCTAATAAGGATACAAATTCTTCTAATACAACACCAAACAAGACAATAAGGTAAATATGAATTATAAGACATTTTAATTACGAGTTTCATTTTTGAAGGAACTTAATTGTAACACTCCACCACTAACAAATATTATCAATTTTAGCGTGTTACGTATCGTCTTGTTACATATCGTCGTTAGACTCACAGTTTTAAAATTTATTTGTTACGGAGAGGTTTTCACTCCTTTATTAAAAAAAAAATGTATGTGTGTATCCTATCCACTCCCTTAGGGTCCAGCATCCTCGCTAGCACACCGTTCGGTGTCTTGCTCTGATACTATTTGTAATGGCCCATGACCACCACTAACAAATATTGTCTGTTTTAGCCCGGTTATGTATCGCCGTTCGCTTCATGGTTTTGAAACGTGTCTGCTTAGGAGAAATTTTCACACCCATATAAGAAATGTTTCGTTTTCCTATCCAATGGATGTGGATCTCACATTAAAAGTTTTTAATAGGTTCTTGAATTTACATTTTTGTGTTTCTAATATATTCATGAACTTTAACAAGTGTTTAATAAGTTTTGGAAATGACCCACTATCCAAATCTGTCAAAACAAATAAAGAGAGCATTAGCCTTCAATTCTCTCTGTTGTTATTATGAAAAAACATACCTCTCATGAGTATATATAGTAGAGAAAGTACTAACTAGCTTCGTAAACTTTCTCCTCAAGTTAAGAATTACTGAACGACGATCTTCATCGTTAAAGCATAAAACTTGTCTATCTACTACCAATTCTCCTATAGTTACTCCATAGGTTAGTAACTTATTCTATTATGTCTACTAACAATACCGTTAAAAGTGAGTGACTTACTTAAAAGCTCGTAATAAGTCTCTAAACATTCCATCTTTTATTTTCTTCAAACTTTTGATTTTATATTAATTCATCTATAAACTAGAAAATTTGTTAAACTTCATATGAATGGAAAGTTACAATAAATAAGTCATATACTTATTCAATATTTTTAAAATTGAATTTGTTAAACACGAACATAAAAATTAATTTAGGACAACAATAATAACATTGAACTGATAATTTTTTAATGTTGGTAATGGTGATCTACTTTTTGTAGGGGATGGAGGTCTCCTCCACTGTTTACCGCAACTATNTAAATTGGTAATTTATAATTGGCAGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTGTTCGGGGTTCAATTAATTTTTTTTTTTTAACTTTTTAGTGATAATTAATTTTTTTAATTACTCTTTATTTATTATTATTATTATTATTATTATTATTATTTTGCATTAGTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAA ATGCAGGCACGTAATGTTTTGTCTCTAATAGAAAAAGGAACACGCCTTTTTATTACAAGATTTCTTGTTGTTGAAAAAAAAAAGATAAAATATAATTTATTTTTACGATTACGAGAGAAGCTAGACTTGGGGCTTGCAGGTGCATATATCAATGGAGAATTTTCATTAATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAA ATGCAGGCACGTAATGTTTTGTCTCTAATAGAAAAAGGAACACGCCTTTTTATTACAAGATTTCTTGTTGTTGAAAAAAAAAAGATAAAATATAATTTATTTTTACGATTACGAGAGAAGCTAGACTTGGGGCTTGCAGGTGCATATATCAATGGAGAATTTTCATTAATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAA MQARNVLSLIEKGTRLFITRFLVVEKKKIKYNLFLRLREKLDLGLAGAYINGEFSLMDKEEGLLNLILRDDRSSWHEFIEDFFGCCESVLEENGLLFILVPDEEHRLSSGFIKEYIFPGECVPLLSRITTAMASASRLW Homology
BLAST of CmoCh19G003400 vs. ExPASy TrEMBL
Match: A0A397YI84 (Amino_oxidase domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_G00593 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 4.0e-19 Identity = 72/194 (37.11%), Postives = 98/194 (50.52%), Query Frame = 0
BLAST of CmoCh19G003400 vs. ExPASy TrEMBL
Match: A0A6J1IB60 (uncharacterized protein LOC111473008 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473008 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18 Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = 0
BLAST of CmoCh19G003400 vs. ExPASy TrEMBL
Match: A0A6J1IFX4 (uncharacterized protein LOC111472470 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472470 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18 Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = 0
BLAST of CmoCh19G003400 vs. ExPASy TrEMBL
Match: A0A6J1IA38 (uncharacterized protein LOC111473008 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473008 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18 Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = 0
BLAST of CmoCh19G003400 vs. ExPASy TrEMBL
Match: A0A6J1ICH0 (uncharacterized protein LOC111472470 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472470 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18 Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = 0
BLAST of CmoCh19G003400 vs. TAIR 10
Match: AT3G23530.1 (Cyclopropane-fatty-acyl-phospholipid synthase ) HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17 Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0
HSP 2 Score: 50.8 bits (120), Expect = 1.0e-06 Identity = 37/104 (35.58%), Postives = 51/104 (49.04%), Query Frame = 0
BLAST of CmoCh19G003400 vs. TAIR 10
Match: AT3G23470.1 (Cyclopropane-fatty-acyl-phospholipid synthase ) HSP 1 Score: 84.0 bits (206), Expect = 1.1e-16 Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 0
HSP 2 Score: 52.0 bits (123), Expect = 4.5e-07 Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 0
BLAST of CmoCh19G003400 vs. TAIR 10
Match: AT3G23510.1 (Cyclopropane-fatty-acyl-phospholipid synthase ) HSP 1 Score: 82.4 bits (202), Expect = 3.1e-16 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0
HSP 2 Score: 50.8 bits (120), Expect = 1.0e-06 Identity = 37/104 (35.58%), Postives = 51/104 (49.04%), Query Frame = 0
BLAST of CmoCh19G003400 vs. TAIR 10
Match: AT3G23480.1 (Cyclopropane-fatty-acyl-phospholipid synthase ) HSP 1 Score: 78.6 bits (192), Expect = 4.5e-15 Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0
HSP 2 Score: 47.8 bits (112), Expect = 8.5e-06 Identity = 34/92 (36.96%), Postives = 46/92 (50.00%), Query Frame = 0
BLAST of CmoCh19G003400 vs. TAIR 10
Match: AT3G23480.2 (Cyclopropane-fatty-acyl-phospholipid synthase ) HSP 1 Score: 78.6 bits (192), Expect = 4.5e-15 Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0
HSP 2 Score: 47.8 bits (112), Expect = 8.5e-06 Identity = 34/92 (36.96%), Postives = 46/92 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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