CmoCh19G003280 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G003280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RHOMBOID-like protein 10, chloroplastic
Location	Cmo_Chr19: 2673180 .. 2685599 (+)
RNA-Seq Expression	CmoCh19G003280
Synteny	CmoCh19G003280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTAGCAGCACCGTGAAGAATGGTGGGAAGTTCCGGTGCCGGACCGTTGGGCTTCCCTTTGTTCCTTGAACCCACGGCCGGCCCTCTTGATCTCTTCGCGACTGCCACTTCTCTCCGTCTCACCCACTCTCTCCGCCGCCGTATTACTCATCACATTAGCCTTACCTTCGCTCTCCATTCGTTCGATAAGGTTCTCTCTCTCTTCTCTCTACTTTTCAATTTTCAGTTTCTATATCCAGTAGCTCAATTGTGATGATTCGAATTTTGATCTTCTGCCATTTATTTGTGCAATCGTTTCGGGATTCGAATTTTGTATGGTTTGAACTGTTATTCTGTTAACTGTTAAGAGAGGCGATCTTATCGGAATATTTTGAAATCTGTTTCGTGGATGATGCAAATTTCTCGGATTTTGTTTCTCTCTATATATGGACCTTGCTTGTGGCTAGCTGTGTTGCATAGGCCAGTGGTTTACATGAATATGGATAAAAAGTTTGGAGGATTAATGCCCTTTAGAAGAAGGTTTGCGTTTTTCAAGTGACTTGTAACTTGACAAGATCATTTGCTGCAATTTTTCTTCTTATTATTATTTTGATAGAACACAAAAGTTTGTATTAGTTGTGATCTTTTTACCCCCTATGAACCATCTCCAGGCCTTCAATCGTTGTTCTATGCGTTGGTTCGAAGTAAACTAAGGGCCTTAAAAACGTTCCACTGAAGGATCTTAGTTTTAGCATCCCTTTGAGAACACTTAGAACCTTATGAAAGATACCAAGAATGTCATGGGCAAGCCAAGAAAGGGTGGAATCTTGGACAAAAAATTTCATCTGGTGTAAGCTAAAGGGGAGTGCATAAGCAAGTGATCAACGTGTTTCATAGTAAAGTTGGGGTGATGAGAGATATTGGAGGACCTATTTATAGTTTACGGTGTAATCAATGTTTAAAAGGCTAGAGGCAACCTTCAGGCTTTTCCTCCTGAAGAAGTTAGGTATAAGCCTGGAAGCAGTGTAAACCTTAAGCCTCGAATTTGATTAAAAATATTTTACAAATACTCACTTGGTATGACCTGAGTATTTAAAACATAACAGTCAAATAAAAGTATAAAAAATTACCCCTGACAATTGCCACTTAAAAAAAAATCTATGACATCTTTAAAATCGCTACTATTGTCATTAATAGGATCAAGTTGTCCCATAACTTTTTTTTCCAATGCTTAGAGTGTCACAATAGAAAAGTAGTAATAATTCAAACTCTCACAGCTCAAGCCTTCATATCTTTGAAGAATGAGGTTGTGAGATCCTACATCAATTGGAGAAGGGAACAAAGAGAGGAGAACGGAGCATTCATTAGAAGGGCGTGGAAATCTCTCCCTAGCAGACGTGTTTTAAAACCTTGAGGGGAAGCTCGAAAGGGAAAGCCCAAAGAGCACAATATCTAGTGGTGGACTCGGGCAGTTACAAATGGTATAAGAGCCAGACACCGGGTGCGTGCTAGTGAGGACGTTGGGCCCCCAAGGGAGGTGGATTGTGAGATCCCACATCGGTTGGAAACCAACTTTGAGGGGAAGCTCAAAAAGGAAATACAAGGGTATGGAAACCAACTTTGAGGGGAAGCTCAAAAAGGAAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGACTTGGGTTGTTACAGAGGCAAATTAATATTATTCTTCTCATCATTGCACGAGTCATAAGACTTTAAGGCTCAATGGACTTTCATAGAGGCGTAAGCCTCTTATGGTTCAAAGGAGGTTTAAGTATCAAGGTTAAAATTTTGAGTATTGCCTCGAGGTGTGCCTAAATGCTTAGCCTCAATAGCATTTTAAAACATTGGGTGCGATTGCAAGGACTGTTGACTAGGATGTTGGGGGATTGTCTATTTATTAATCCAGAATTTTGTGGAAGGTTGGCAATCTAGCCACTAGTTTGTGTTTTGTTGTTGTAATACGGCATGAGAAGTTTTGAAGATAGATATTAGTTATAGTTATAGTAATGCTATGGAGGTGAGCCTTATATAGTTTAATACATCACCACGAGCTTTAATAACTTCAATTTTATACCATTTCTAACAGCCCAAGTCCATCGCTAGTAGATATTGTTCTCTTTAGGCTTTCCCTCTAGGTTTTAAAATGCACCTGGTAGGGAGATGTTTCTATACCCTTACAAAGAAGGGTTCGTTCCCCTTTCCAACCGATGTGGGATCTCACATTTCCACTTGCTCTGGAATCTTTTTCAGGATATCATCAACTTCAAGGCTAACCGGGACATGATTTTATGGAAAAATTAAAGCTCTTGAAAGTTTATCTTAAGGAGTTGAACAGAAAAATGGTAATTGATTTATTTATTTCTAAGAAAAGTAGGATACTATTGTGGAGTTGAAGATGTTAGATGGCTTTGAAGACATTGCTCTCTTAATGATTTGAGGAGTCATAAAAATTCTCGTAAGTGTAAGTGCCTTCTTCAATACATTATCTTCAAAGAGGAAACAATTTGGAGACAAAAACTTCAATACTCAAAGCAGCTTAGGAAGGTGAGATGAATACATAGGTTTTCTATAGTCTAAAAATGGAACTTGGGATGAATGGCTGCTAACAGAGGCATGTTAGCTTATATTACCTTTGGGATGGTTGTGATTGACCTCCTGCAAACGAGTAATTATTGCATGTACAGCTAGATTGGAGTTTAATAGGTATGTTGATAGTTCTTGCGCGTGCCAATGAATTCCTTGTACCTAAATACCTCTAGACATTTATAATCAGTTTTCCCTCGCAACTCAATTGATGTTCTCTAGTATGCTCTCTGCTGTCCAACCACCTTTCGTCCCCGCCTGCGAATGCTTGAAATCTTCGGTTCATGGTTGTTGCTCATCGTCGATTCAAATCAATTCTTGTTGACATTTTTTCAATGTTTCCCCTCCAGTTTCTTCCTTCTTCTATTGAGACTTGCCTTCATTGGAAATTTTCAGACCACTCACTTCCCCTTCTCCCCCCTTGCCTTTCAATTTTTGTGAAGAACCATTCACGGAGAAGGATGTGATCTCAAACTTACCTCTGGAAATCTCGGATTTAACTGTTGCCACATGGGTTTTTTGTTTTTCTTCCCCTGATTGTCGGTTCTCATGAATTCCCGCCGTCAATCCCTCGATACTTAGATTCAGGAACGCAACATACCTTTGATCTCATCAATGTCTCTTCCGATACCATCCATCCTCTCTTTTAATTTTTTTGAGCCATTTTTTTTCCAATCTCCCCCGGATGAATGCCAATACCAATTTGTTAGGTATCCAAGCACAAAAAATATAACAAAACGATGAAGATTACTATATTGGAATATAATAAAGAATTACAATATCAATAATCTTTCAAGGGGTCTATCTCTTTCCCAAATCCCACAATGGACCGTCGCACCAAAAAAATCCCCTCTTTAAGGTCCCTAACTCTCCTTATTTATAACCAAGTCAACACTAGCTAATTACCCACATGCCCTGCCCTTACTACTATCCTATTAATATTACCAATATCCCTTACTAGTACTCTCACATATTCTTCCTTTGTAATTAACTCTAATGGCTTTTCTTTTGTCTGGTAAACCCCTAATAAACCGTACATTTAAAATTTCTTTATATATCTATGAAAAGCATCTCATTTTAATATATTTAATTTCTTATATTGCTCTGTATTACTCAGTGTAATCTTAATTTTTGGTCAACATAGCTTTCCTTCATATAAATATTTTTGTGCATACAAAGGCCTTATTTGATTATACTTGAATTAAAATGTTTCTACAAAGCTATTCAATGTGTATTAGCTATTTTAAATAGTTTCTGTAATGATCTTAACACATTTTTTTCAGTTTCTTTGATTTTTTAATTGGTGAATCTTGGTTCTGTACTTCTTAACTCCATTTTTTATACTGGTTGAAGCATAATACTACTTTGTGATTAATAATATATTATTGTCATGCTCTATTTCTTTTCCGGCAGAAACTTGCTCCTCTTATTGAAGTCTCTTCTAAATTGAAGAGTGCATGGTGTTCAAGAGCTCTCCGTTTTCCAGGATTAAATTTTCTTGAAGTATCTAAGGATATCTTATCATCCACTCATGCTGCTTGTTTATATTTCTTTGGTGGCGGGGATACTGGTAGTAGCTTAAAAAATGAGGCGACATCTCACTGGAAAACATCAAATAGAAATCCACAAAACGATCGAAGATGGACCACTATTCTTCTTGGTGTTAATATTTTGTGAGTTTTACAGTTAGTTAGCCATTTTCTCTTTGATACAGCTCCTACGATCATGTCCTCTGATGTATAACTTTTCTTTTATTCTTCTGATTCCTGTTTATCTTATCTGTTAAACATGTGGTGTGTTTTTTCTGCAGAGCTTTTCTGGCTCAAGTTGCATCAGAAGGAAAGTTACTCCTATGGGGATCTAAGGTGATACTCAGTTACTGCAGATATCATGTTTGGCATATAATTTTGTGACTGTGTTTGTCGGACGTTTACTGCATGATTCACTTATAATTTGCAGATAAATGCTCTAATAGATCAAGGACAGTTATGGAGGTTGGTCACGTCTTCTTTTTTGCATGCAAATATTGGGCATTTGATGGTATATGGTTCTAATATTTTGTGGCATCTGTTGCATTATTTTTGTCTTCTTTAATTACGGGAAATCAACACTTGAAAGTTTTTGTTGCAGGTAAATTGTTATTCTTTAAATTCTATTGGTCCTGCAGTGGAGAAAATCTCTGGCACTCGGAGATTTCTTGCAGTGTACTTTGCCTCGGCAATTGCAAGTACAATTCATAATCTCAATAAAATAGCCATGATATTATTAAATACCTTTTTGACTCGATCATTTCAAGAAAATCAGGTTCATCCATGAGTTATTGGTTCTGCAAGGCACCCTCGGTTGGTGCATCAGGAGCAATCTTTGGATTGGTATGACTTTTCATTTGCATACTTGACTTTTGCCAACAAGCATGACAGGAAAAAAAAAAAAAAAAGATTGTGATAGTAGTTATGGATTTTTTTCCTTATATCAGGATGTTGGGCTTTTTCTTTCTTTTTTACTTTTTATTTTTTTGTCAATCGAGTTCTTCATTTACGGTCTTCTATAAAGTTCACTCCTGCTGCTTCTCTAAAGGTTTATCTGAACGTGAGAAATTGCAAGCCTTAGCTTCTGCTTTGAAAATTTTGATTATTTGCATATTTTACATCCAGAACATACTCTAAGGTGTGGCCTTGAAGCTCCCTACCTGTAGAACTTTTAAGTCTGGCAAGAATGGGTGACTTACCAGAGAATAGTAGGTGCCTAGTTGATCAAGCAATAAGTCCCATCCTAAGAAAGGCCTTATATGAGAGACTACATGTCGAAGGATATGTCGAAGGATTAACCAAGCTGAGAATAAATGATATCTATTACTTTGCTTGAGTAGGAGTGTTGAAGGATATTTGTGTAATTTCATTAAATAAGTGAAGCAGTCGACCTCGTTATTTGTCTTATTGGATTTACTTACCTAATATCTAGGGATTATTATTTAGATTTAGCTACCTAATATCTAGGAATTTATTTAGACATACGGTTACCTAGTATCTAGGGTATTTAGACACACAATTCTCTAGAAATTAATAAGAAAAACAACAAGCTAATTTAGACTTCCAACACAGCATGTTGCTAGCATTCGTTAGGGGTATCTCTTGACTAGAGCCTATTTTTGTAGTTTCCTTTCATTTTTGTGAGCTTCTGTTGTGTACACTCTTGTACCTCTTTCATTGATTCTCTATAAAAGCTTTGTTATTCATCAAAAAGAAAAAAAAAGAAAAAAAAGTCTCGTCATAGACGGCTATATATTGCTGACGTGGGAGAAAAAAAGGCTACACTTGTTACGTTTAAGTTATTTTGATGAATGGTTGGCTCTTTATTTGTTCCTGAGTATTTTAATTTTTAAACTTCTGATTCAGGTAGGATCCTTTGCTGCATTTGTTGTGAGACATAGAAAATTGGTCGGTAGAGGCAACGAAGATCTGCAGCACATTGCTCATATAATAATCTTAAATATGGTGTGTTTTCCAATTTCCTTTTCTTTTGTCAGATTATTATTGTTAATTTTTTTATGGTTTTCAAATTATCATGTTATGGTAAGAATAGTGAAAATAAACTATCACATGGTCGTTCAGAATACTGATCAGTGTACCTGTTAAGTTTACTTCTACCATGCGGATCAGTTGGCAACCTTTACGAGAACCTGGAATTGCATCTATAATTACTATTCTGTAACGTTAATCTGTTAGTTTCTATTTAACTTCTTGTGTATGTTATTAGGAGAATAATTTCCATGATCATTTGGCTTGCAGGCTATTGGGATGATGTCTAGAGGCATCGATAACTGGGGACATGTAAGTTTGAGAGTAAACAATATTTATTCATTTATTTATTTCTCCATTGAAGACTACTATACTGTTACTGTTTGTCAATAAATGAAAACATTTTTTTTTTTTTTTTTAGTTAGCTGGAACTAGAAAATGTCTGTTGTCATAAAGATTGCTTGATATGTTCAATAATTTGAGGCTGAGAAGCTTTAGACCTCATTCATTCAATTGCTTCATTTGGCTTCAGTCATACCTTATTCATTCAATAGTGTTCTAACCCAAAGCCCAAAAGATGCTGAAATAAAAGAGTGAGTAGAACATAACTAAAAATGTACAAGGCAAGGTGCCTAAGTATTGATAGTGTACTTGTCACCACTGCGTTAAAATTAAGCATCTCGGCTAGTGGTATTGTGTGCTCTCCCCTGCTGGCAAGTTTGGGTAGAAGCCCTGACACCACTCAAACTTGAGGGTTGATTCCCACCTCCCTCATGGTCCTTCGAGGGTAATTATTTGCCATGTGGTCCTCTTAGCCACATCTAAAATACGCACCTGAGCATGTCAAACATCGACCACAACGATATCTACCACTATTAGTTCACGTGAAAACCTTAAGAAAGAGGTGAGAACTCAGTTCTCCTTCGAAAATGTCGAATTCATAGCGAAGCGAAAATTGTGAGAACTTAAAATACGCTGGGGAATAATAGACTATGTCAAACAATTCTCTGCTTTGATGCTGGATATCAAGAATATGTCAGGACAAAGTATTCAGCTTTGTCGAGGAAATGCAACATGGGCAAGAACAAAATTTACGAACACATAATCAAGATCTTGCCGTTGCATTTGCGGCTGTAGAGAGACTCCTGAACTTTATTGGTGAAGCGGGCTTTCAAAGGAAACATACATCATCCCAAAAGTTCAGCGGGCTTTCAAAGGAAACATACATCATCCCAAAACATCGAGAATAGACCTTTCAAACCTATGGGTTAGAGGAATGATAGCACAAACAAACCTATGGGTTAGAGGAATGATAGCACAAACAAGGAACTATGAAATAACTTAGTTTACAATGTCTTCTATGTAAGGGACCCTATAGACTCTATGCTTTTCGTCATTGAGCTGCCCTCAGGGCACTTCAAGCCTTAGTACAAGGAGGTTATGACCCAAAAGCCAAACTAGTGGTAGAAAAGGAAGAGGACCACGACACTCTTTTAAGAATGGGAGTGTTGAAATTTTTATCAACCATACTAAAGAAAGTTGATCCAAAAGAAGTATTCGAGAGGGACTGATGTTTGATGCAATAATCCATTCTTGGCCTAGTAAGAGCAATTTAGTGGACTCAGGTGCGACTCACAACTTCATCTCTGACTAAGAAGTCCGTAGATTGGAACTCTAGAAAGAAACTCTGGAAAAATGAAATCTCCTAACTTAGAGGCCCTACCCATCAAGAGTATCCAAGAGAGTCTCTTTAAGGTTGGGAGCTTGGTCAGGAGAGATGGTTCTCGTCGTGGTTCTTATGGATGACTTCGACGTGGTACTGACATGAATTTTCTTCTAGAGCACAAAGTCGTCTCAATGCCAGTAGCGAAGTGCGTAGTAATTACCAATTGCAATCCCACAGTGATCTTTGCAAGCATCAAACAGTTGAGTAGATAAAAATGATTTTCGTATTACAATCAAACAAAGAGCTTGTCTAAAAAGCGCCCACATTCATGGCCATATCTATGGTAAAAGATGTAACAAATACAGAACCTGTCCCAAGTGAAATCAAAGATGTCTTGCACAACTATGTTGATATAATGCAAGATAGCTTACCAAAGACGTGCCCTCTCGTCGTGGTATTGATCACGAAATTAAGCTCTTCCTAGAGGTCAAACCCCAGTAAAAAACGAATATCAGATGGCTTCACCAGCTACAACCAAACTAAGAAAGCAATTAGACTAGTTATTGACTGCAGTGTTTAGTTTCCCTGTAAAGGTGTCATATGGGGCCATTGTTATTTCAGAGGGAGAAAAATGGGACAGCATCGACTATACAGCTTAAAACAACAAAGTGACAGTACGTCACAAGTATCCCCTGCCAATAATATCTGGCATGTTTGACCAGGGGCCAAATACTTCACAAACTTGAACTTGCAATCAAGATATTACCACAAATCATAAACTTTATGGGACCAAGTTTATGATTTGTCTTCTATGTTGTTAGTTTTTCATTCAAGTTGTCTAGTCATACAATTTACATTAATGAGAAAGAGAAAAAGAAAAGAAAAAAGTGAGTAATGAGAGAAAGATCTGAGATTCAGCATGCAATACAACCGGCCAGTTTGATAATTTCACCTTTGTAATGACGTAAGCAAAAGGTTATGAAGTGTTGGTTTGGTTGTCAAGGAGACATTAAGGAATGATCAGCACTAATTGAGAGAAATTTATAGTCCTGAAACAATTGAAGATGGGGTGAAGAATTCAATGGTAAAAAGATTAACATTTTATTCCCTCTTGTTGACAGTGAATTATCTTAATATAAAATCTAGTTATATTTTTTAGCTTAATGAAAAATAAAATAACCTTTTTTTTTTTAGTACGAGATGAGAACTTGAACCTCAAATCTCGAAAGAACAAGTGATGTTTTAGTTGTTGAGTTATGCTATAATGGAGACCGGTGCAAGACTAAATTAGTTTGCTGTTTTTGAAGAGTATAGTGCCTTTTATACTATAGAAAGGCTGTCTCAATACAACTCAATTCTGAGATGCTAGGTAACCATAAATCTAACTCAATCTCTAGTGTAATAATAAATCTAACTCAATTCATAGATACTAGGTAATAACAAATCTAAATAAATTCATCCCTAAATATTAGGTAACAATAGGATAAATTGGGGAGATCAACTACTTATTTAAATGAGATTACACAAATATCTCCTAACTTTTAATCCTTCGACACTCCCCTTCAAGTTGAGTAATAGATATCATTCATTCTCAGCTTGAATACTAGTTCATGAAATAGTAAGCTATGAAGTCTTTTTGTTGGCACATTTGTCTCTATTGAAGTCGTGAGAGCACAGAACTCATACATGCTATCCCCTTGGAGTACTTCCACAAGCGTTGCTTGCTTATCTCATGCTCACTCTCTTGAAGCACTTCCACGAGCATTGCTCACTTTTCTCGTTCTCACTTTCTTAGAGCACTTCCATGGGCGTTTCTCGCCTCTCTGGTGCTCACTTCTCTTGGAGCACTTCCACAGGTGTTACGTCTTTCGTGCTCACTCCTCTTAGAACACTTCTAGGGGTGTTGCGCCCCTCTCTCGTACTCACTCCTCTTGGAGCACTTCTGCAAGAGTTGCTCACCTCTCTCATGCTCACTCCTCTTGGGACACTTTCACTGACGTTTCTTGCCTCTCTTGTGCTCACTTATTCTAGAACGCTTCCACGGGCCTTGCTTTCCTTTTTCGTGATCACTCCTCTTAGAGCACTTTCACGAATTTTGTTTGCCTCCTTCATGCTCACTCATCTTGGGTTGGGTCTTGGAGACAAGATGGATCCCGAATTCCTCCCCAGAACTCGATCTACGACGGGAATGAAAAAGAAGAGAGACTTTTTCTCGACAGCAATTTAACCTTTCGGATGTAAATAGGTGTTTGTTTGGTTCTTTCTCCTTCCTTCACCTATGAGCTCTTGCATGAGTGATTATTCGTTCGCCGTAACCAGAAGTCAAAATTGGGGTGATACCCCGGGATGGGTAGGAGCAGGTCGAGTCCGTATCGCCGCAGAGCACTGCGTCCGGACAGAGAAAATAAGATAATATACAATGTCTCTTTTCTTTAACAAAATAATTCAGTTTTTTTTTTAATATGACTTGCTACTTCTTATTTTATTATTTTATAAAATTGAAACTATGCTGCTACAAAAGCAATGTAAATTTTTACATATTATTTTGTACTTTTCTCTCTAGTTGAGGAAAAGAGTATAATAGGCGGGTTTATATGGGTGCATGTGGAACATAGCTTAGAATGGAGTATAATTATGCAGGAAAAATTGCATTTGAAGCACCTGCAATTTCCCTTGTTATCTGTTGACTTGACCGCCTGTGATTTATTTGGAATGAATATTTTCTTCTGAGAAATTTTAAAGTCAACCAATTACATGATGGAAATATTGGTAAAATGAATATATTGGTAATATTACTAATATTATTGGGATATGAGCAAGGGTAGAGTGGTAATTAGCTAAGCAGTTAAGTGGAGGAAATGAGATCATATTTTGAGTGGTCCATCCAAAGTGGGTGGATTATGGGAGAGAGAGAGCCCTCTCCAAAGGCTATTGTTATATTGTAATCTTTTCTTTGATGTTGCAAGATTTTTTAGTGTGTTTTCTTATATTCAGATACCTAATACAGCTTTAGAAAGGAGAATAATTATGCAGGAAAAACTGCATTTAGACCTGCAATTTCCGTTGGTATCTATTGACTTGACCTTCTGATTTGTTTGGGTTGAATATTTTCTTCTGAGAGGAACTTCCAAGTCAACCAATTGGAAGACGGAAATTTCTTTTTAGATAGCTGGAACAGTCTAAGCCCACTGCTAGCAGATATTGTCCTTTTTGAGCTATTTCTCTCAGGCTTCTCCTCAATATTTTTAAAACGCGTTTGCTAGGAAGAGGTTTCCACACCCTTATAAAGAATGTTTTCTTCCCCTCTCCAACCGATGTGGGATCTCATAATCCACCCCCCTTTGAGGCTCAGCATCCTCACTGGCACTCGTTATCTCAAAATCCACCCCTTTCGGTGCCCTGAGTCATTGCTGGTATTCGTTCTTCTCTCCAATCGATGTGGGATCTCACAATCCACCCCCTTCGGGGCCCAACGTCCTTGCTAGCATTCGCTATTCTCTCAAATCGATGTAGGATCTCACAATCCATCCTCTTTAGGGTCCATCATCCTTGCTGACAAACTGTCTGATGTCCACCCTCCTTCAGGGCTCAGCGTACTCGCTGGCACACTGCCCGGTATCCATGCCAGCGAAAACACTGAGCCGTTATTGCCATTACAATAACGGTGGTAATAAAATCACAATTAGGGGGAGGATATTTGGATGTGCCGTTTTCAACATCTTTAAAAGTCTTAAGATCTGAATTTTTTCAGGAATAGTGCAGCATAAACTTGAAGGAGTAAATGCAAAATTGACTTTTGTACTATTAGCTTGTTATAATTATATCTTCTTTCATTTTGAGCATTTATCCTCCTAAGCTTATGAAATTGTCACCATTTTAACTTCGTTAATGATACTTTGAACTAAAGAGGTAAAAGATGAAACCATTAAAATAGTTACAATGATGTTCCAACAAAATCTCTTGTTTTAAATAAACCTAACCATTTCCATATGAAACCTCTTATTAAGTATTGGAGCATGCAATTACTGGAGTGATTTGTGCAGTCATTTCTAAATTTAATTGATCTGAGTAAAATGTGAAGAATTATGGATTGAAACTTTCTTCATTTCAAGCATTAAACTGTCAAATGTTGCAAAGATGGTTGTATGTGCAACGTTGTCGGGGTGCTGATTTTGTTCCATTGATATGTCAGCTTGGAGGATTTCTAGGTGGGGTAGCAGCATCGTGGCTTCTTGGGCCTGCCTGGAAGCAGGAACCTTCTTTCAACAATGGCCGAATAACATTTACAGACAGGGCTCCAATTTTTTACCTCATCAATTGGAGAAAAAGAACCTAGATGAGGTAAGTTTCATTTTCCCAGCATTTGAATGCCTTGTATCTCTTGGAAAATTGCATTCTCTGTAAGCTTTTTGGTCAATACAAATGGGGGAAAAATTGTAGAAGCATCATCAAGTACTAATTGCGAAGAATGTGCATGTACAGATGTACTCCTAATATTAGCCTTGCAAGGTCTACTTTTCTACTTTTCTATAGTTTTAGGCCATAGAAACTGAAGTTGGTGTATATTTTGATTTGAAAAATGGTTGTGTAGGAACAAATTTGATCATTAATTAGCCAATGTTTACATTAGGGGGTTTATATAACTCG

mRNA sequence

AGTTAGCAGCACCGTGAAGAATGGTGGGAAGTTCCGGTGCCGGACCGTTGGGCTTCCCTTTGTTCCTTGAACCCACGGCCGGCCCTCTTGATCTCTTCGCGACTGCCACTTCTCTCCGTCTCACCCACTCTCTCCGCCGCCGTATTACTCATCACATTAGCCTTACCTTCGCTCTCCATTCGTTCGATAAGAAACTTGCTCCTCTTATTGAAGTCTCTTCTAAATTGAAGAGTGCATGGTGTTCAAGAGCTCTCCGTTTTCCAGGATTAAATTTTCTTGAAGTATCTAAGGATATCTTATCATCCACTCATGCTGCTTGTTTATATTTCTTTGGTGGCGGGGATACTGGTAGTAGCTTAAAAAATGAGGCGACATCTCACTGGAAAACATCAAATAGAAATCCACAAAACGATCGAAGATGGACCACTATTCTTCTTGGTGTTAATATTTTAGCTTTTCTGGCTCAAGTTGCATCAGAAGGAAAGTTACTCCTATGGGGATCTAAGATAAATGCTCTAATAGATCAAGGACAGTTATGGAGGTTGGTCACGTCTTCTTTTTTGCATGCAAATATTGGGCATTTGATGGTAAATTGTTATTCTTTAAATTCTATTGGTCCTGCAGTGGAGAAAATCTCTGGCACTCGGAGATTTCTTGCAGTGTACTTTGCCTCGGCAATTGCAAGTTCATCCATGAGTTATTGGTTCTGCAAGGCACCCTCGGTTGGTGCATCAGGAGCAATCTTTGGATTGGTAGGATCCTTTGCTGCATTTGTTGTGAGACATAGAAAATTGGTCGGTAGAGGCAACGAAGATCTGCAGCACATTGCTCATATAATAATCTTAAATATGGCTATTGGGATGATGTCTAGAGGCATCGATAACTGGGGACATCTTGGAGGATTTCTAGGTGGGGTAGCAGCATCGTGGCTTCTTGGGCCTGCCTGGAAGCAGGAACCTTCTTTCAACAATGGCCGAATAACATTTACAGACAGGGCTCCAATTTTTTACCTCATCAATTGGAGAAAAAGAACCTAGATGAGGTAAGTTTCATTTTCCCAGCATTTGAATGCCTTGTATCTCTTGGAAAATTGCATTCTCTGTAAGCTTTTTGGTCAATACAAATGGGGGAAAAATTGTAGAAGCATCATCAAGTACTAATTGCGAAGAATGTGCATGTACAGATGTACTCCTAATATTAGCCTTGCAAGGTCTACTTTTCTACTTTTCTATAGTTTTAGGCCATAGAAACTGAAGTTGGTGTATATTTTGATTTGAAAAATGGTTGTGTAGGAACAAATTTGATCATTAATTAGCCAATGTTTACATTAGGGGGTTTATATAACTCG

Coding sequence (CDS)

ATGGTGGGAAGTTCCGGTGCCGGACCGTTGGGCTTCCCTTTGTTCCTTGAACCCACGGCCGGCCCTCTTGATCTCTTCGCGACTGCCACTTCTCTCCGTCTCACCCACTCTCTCCGCCGCCGTATTACTCATCACATTAGCCTTACCTTCGCTCTCCATTCGTTCGATAAGAAACTTGCTCCTCTTATTGAAGTCTCTTCTAAATTGAAGAGTGCATGGTGTTCAAGAGCTCTCCGTTTTCCAGGATTAAATTTTCTTGAAGTATCTAAGGATATCTTATCATCCACTCATGCTGCTTGTTTATATTTCTTTGGTGGCGGGGATACTGGTAGTAGCTTAAAAAATGAGGCGACATCTCACTGGAAAACATCAAATAGAAATCCACAAAACGATCGAAGATGGACCACTATTCTTCTTGGTGTTAATATTTTAGCTTTTCTGGCTCAAGTTGCATCAGAAGGAAAGTTACTCCTATGGGGATCTAAGATAAATGCTCTAATAGATCAAGGACAGTTATGGAGGTTGGTCACGTCTTCTTTTTTGCATGCAAATATTGGGCATTTGATGGTAAATTGTTATTCTTTAAATTCTATTGGTCCTGCAGTGGAGAAAATCTCTGGCACTCGGAGATTTCTTGCAGTGTACTTTGCCTCGGCAATTGCAAGTTCATCCATGAGTTATTGGTTCTGCAAGGCACCCTCGGTTGGTGCATCAGGAGCAATCTTTGGATTGGTAGGATCCTTTGCTGCATTTGTTGTGAGACATAGAAAATTGGTCGGTAGAGGCAACGAAGATCTGCAGCACATTGCTCATATAATAATCTTAAATATGGCTATTGGGATGATGTCTAGAGGCATCGATAACTGGGGACATCTTGGAGGATTTCTAGGTGGGGTAGCAGCATCGTGGCTTCTTGGGCCTGCCTGGAAGCAGGAACCTTCTTTCAACAATGGCCGAATAACATTTACAGACAGGGCTCCAATTTTTTACCTCATCAATTGGAGAAAAAGAACCTAG

Protein sequence

MVGSSGAGPLGFPLFLEPTAGPLDLFATATSLRLTHSLRRRITHHISLTFALHSFDKKLAPLIEVSSKLKSAWCSRALRFPGLNFLEVSKDILSSTHAACLYFFGGGDTGSSLKNEATSHWKTSNRNPQNDRRWTTILLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGAIFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVAASWLLGPAWKQEPSFNNGRITFTDRAPIFYLINWRKRT

Homology

[Close]

BLAST of CmoCh19G003280 vs. ExPASy Swiss-Prot
Match: F4ICF4 (RHOMBOID-like protein 10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBL10 PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.1e-87
Identity = 169/319 (52.98%), Postives = 217/319 (68.03%), Query Frame = 0


Query: 26  FATATSLRLTHSLRRRITHHISLTFALHSFDKKLAPLIEVSSKLKSAWCSRALRFPGLNF 85
           FATA S+   H     ++ H+ L F L S  KKL    +  +++K A   R   F G NF
Sbjct: 24  FATAASVHACH----HVSRHLRLDFHLRSSLKKLQHFSD-DARMKFARYQRVFVFNGANF 83

Query: 86  LEVSKDILSSTHAACLYFFGGGDTGSSLK--NEATSHWKTSNRNPQNDRRWTTILLGVNI 145
           L+   DI  S  +  + FF GG++  + +   E +S+ +TS RN  N RRWT +LL +N+
Sbjct: 84  LKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAINV 143

Query: 146 LAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVE 205
           + ++AQ+AS+GK+L WG+KIN+LI++GQLWRL T+S LHAN  HLM+NCYSLNSIGP  E
Sbjct: 144 IMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAE 203

Query: 206 KISGTRRFLAVYFASAIA-------SSSMSYWFCKAPSVGASGAIFGLVGSFAAFVVRHR 265
            + G +RFLAVY  SA+A        S+MSYWF KAPSVGASGAIFGLVGS A FV+RH+
Sbjct: 204 SLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHK 263

Query: 266 KLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVAASWLLGPAWKQEPSFN 325
           ++V  GNEDL  IA II LNMA+G+MSR IDNWGH+GG LGG A +WLLGP WK E +  
Sbjct: 264 QMVRGGNEDLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTTR 323

Query: 326 NGRITFTDRAPIFYLINWR 336
           +GR  F D API  L+ WR
Sbjct: 324 DGRRVFMDSAPIPLLLRWR 337

[Close]

BLAST of CmoCh19G003280 vs. ExPASy Swiss-Prot
Match: P54493 (Rhomboid protease GluP OS=Bacillus subtilis (strain 168) OX=224308 GN=gluP PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 5.1e-25
Identity = 71/178 (39.89%), Postives = 101/178 (56.74%), Query Frame = 0


Query: 134 WTTILLGVNILAFLAQVASEGK-----LLLWGSKINALIDQGQLWRLVTSSFLHANIGHL 193
           +T + + + IL F     + G      L+ +G+K N+LI QG+ WRL+T   LH  I HL
Sbjct: 179 FTYLFIALQILMFFLLEINGGSTNTETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHL 238

Query: 194 MVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGAIFGLVGSF 253
             N  +L S+G AVE++ G+ RFL +Y A+ I  S  S+ F   PS GASGAIFG +G+ 
Sbjct: 239 AFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSPYPSAGASGAIFGCLGAL 298

Query: 254 AAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVAASWLLG 307
               + +RK+  R      +I  III+N+  G     IDN GH+GG +GG  A+  LG
Sbjct: 299 LYVALSNRKMFLRTIG--TNIIVIIIINLGFGFAVSNIDNSGHIGGLIGGFFAAAALG 354

[Close]

BLAST of CmoCh19G003280 vs. ExPASy Swiss-Prot
Match: Q6IUY1 (Rhomboid-like protease 3 OS=Toxoplasma gondii OX=5811 GN=ROM3 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-15
Identity = 66/155 (42.58%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 152 SEGKLLLWGSKINALIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVEKISGTRRF 211
           +E  L+L G+         QLWR+VT  FLHA I HL++N   +  I   +E+  GT++F
Sbjct: 63  NERTLMLLGAAYAPAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKF 122

Query: 212 LAVYFASAIASSSMSYWFCK-APSVGASGAIFGLVGSFAAFV-VRHRKLVGRGNEDLQHI 271
           L  YF SAI  + +S      A SVGAS A FG++G  AA V V   KL    +E+L+ I
Sbjct: 123 LVTYFLSAIVGNLLSMLMQPWALSVGASTAGFGIIGGMAAEVSVVWCKL----SEELKRI 182

Query: 272 --AHIIILNMAIGMMS--RGIDNWGHLGGFLGGVA 301
               I IL + I  +S  R +D +GHLGGFL GVA
Sbjct: 183 YSMDICILAVLIYFLSFGRTVDTFGHLGGFLAGVA 213

[Close]

BLAST of CmoCh19G003280 vs. ExPASy Swiss-Prot
Match: Q9CAN1 (RHOMBOID-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RBL2 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.2e-15
Identity = 51/141 (36.17%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 166 LIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSM 225
           ++ + Q WRL++  +LHA I HL+ N  SL  IG  +E+  G  R   +Y  S +  S +
Sbjct: 104 VVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSIL 163

Query: 226 SYWFC-KAPSVGASGAIFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSR 285
           S  F  ++ SVGASGA+FGL+G+  + ++ +  +       L  +  II +N+A+GM+ R
Sbjct: 164 SSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGMLPR 223

Query: 286 GIDNWGHLGGFLGGVAASWLL 306
            +DN+ H+GGFL G    ++L
Sbjct: 224 -VDNFAHIGGFLTGFCLGFVL 243

[Close]

BLAST of CmoCh19G003280 vs. ExPASy Swiss-Prot
Match: Q9SSR0 (RHOMBOID-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=RBL5 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.2e-15
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 160 GSKINALIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASA 219
           G+    L+++G+ WRL++  +LH    HLM N  SL  IG  +E+  G  R  A+Y  S 
Sbjct: 94  GALERRLVEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISG 153

Query: 220 IASSSMSYWFC------KAPSVGASGAIFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHII 279
           +  S +S   C      +  SVGASGA+FGL+G+  + ++ +  +       L  +  II
Sbjct: 154 LGGSLVS---CLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILII 213

Query: 280 ILNMAIGMMSRGIDNWGHLGGFLGGVAASWLL 306
           +LN+++G + R +DN  H GGFL G    ++L
Sbjct: 214 VLNLSVGFLPR-VDNSAHFGGFLAGFFLGFVL 241

[Close]

BLAST of CmoCh19G003280 vs. ExPASy TrEMBL
Match: A0A6J1HJ61 (RHOMBOID-like protein 10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464041 PE=3 SV=1)

HSP 1 Score: 682.2 bits (1759), Expect = 1.1e-192
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MVGSSGAGPLGFPLFLEPTAGPLDLFATATSLRLTHSLRRRITHHISLTFALHSFDKKLA 60
           MVGSSGAGPLGFPLFLEPTAGPLDLFATATSLRLTHSLRRRITHHISLTFALHSFDKKLA
Sbjct: 1   MVGSSGAGPLGFPLFLEPTAGPLDLFATATSLRLTHSLRRRITHHISLTFALHSFDKKLA 60

Query: 61  PLIEVSSKLKSAWCSRALRFPGLNFLEVSKDILSSTHAACLYFFGGGDTGSSLKNEATSH 120
           PLIEVSSKLKSAWCSRALRFPGLNFLEVSKDILSSTHAACLYFFGGGDTGSSLKNEATSH
Sbjct: 61  PLIEVSSKLKSAWCSRALRFPGLNFLEVSKDILSSTHAACLYFFGGGDTGSSLKNEATSH 120

Query: 121 WKTSNRNPQNDRRWTTILLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSF 180
           WKTSNRNPQNDRRWTTILLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSF
Sbjct: 121 WKTSNRNPQNDRRWTTILLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSF 180

Query: 181 LHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGA 240
           LHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGA
Sbjct: 181 LHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGA 240

Query: 241 IFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVA 300
           IFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVA
Sbjct: 241 IFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVA 300

Query: 301 ASWLLGPAWKQEPSFNNGRITFTDRAPIFYLINWRKRT 339
           ASWLLGPAWKQEPSFNNGRITFTDRAPIFYLINWRKRT
Sbjct: 301 ASWLLGPAWKQEPSFNNGRITFTDRAPIFYLINWRKRT 338

[Close]

BLAST of CmoCh19G003280 vs. ExPASy TrEMBL
Match: A0A6J1HX69 (RHOMBOID-like protein 10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467054 PE=3 SV=1)

HSP 1 Score: 664.5 bits (1713), Expect = 2.4e-187
Identity = 328/338 (97.04%), Postives = 331/338 (97.93%), Query Frame = 0


Query: 1   MVGSSGAGPLGFPLFLEPTAGPLDLFATATSLRLTHSLRRRITHHISLTFALHSFDKKLA 60
           MVGSSGAGPLGFPLFLEPTAGPLDLFATATSLRLTHSLRRRI HHI+LTFALHSFDKKLA
Sbjct: 1   MVGSSGAGPLGFPLFLEPTAGPLDLFATATSLRLTHSLRRRIIHHITLTFALHSFDKKLA 60

Query: 61  PLIEVSSKLKSAWCSRALRFPGLNFLEVSKDILSSTHAACLYFFGGGDTGSSLKNEATSH 120
           PL+EVSSKLKSAWCSR L FPGLNFLEVSKDILSSTHAACLYFFGGG TGSSLKNE TSH
Sbjct: 61  PLVEVSSKLKSAWCSRVLHFPGLNFLEVSKDILSSTHAACLYFFGGGHTGSSLKNEGTSH 120

Query: 121 WKTSNRNPQNDRRWTTILLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSF 180
           WKTSNRNPQNDRRWT ILLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSF
Sbjct: 121 WKTSNRNPQNDRRWTNILLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSF 180

Query: 181 LHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGA 240
           LHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGA
Sbjct: 181 LHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGA 240

Query: 241 IFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVA 300
           IFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIG+MSRGIDNWGHLGGFLGGVA
Sbjct: 241 IFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGIMSRGIDNWGHLGGFLGGVA 300

Query: 301 ASWLLGPAWKQEPSFNNGRITFTDRAPIFYLINWRKRT 339
           ASWLLGPAWKQEPSFNNGR TFTDRAPIFYLINWRKRT
Sbjct: 301 ASWLLGPAWKQEPSFNNGRRTFTDRAPIFYLINWRKRT 338

[Close]

BLAST of CmoCh19G003280 vs. ExPASy TrEMBL
Match: A0A6J1DL86 (RHOMBOID-like protein 10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022158 PE=3 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.6e-151
Identity = 268/338 (79.29%), Postives = 295/338 (87.28%), Query Frame = 0


Query: 1   MVGSSGAGPLGFPLFLEPTAGPLDLFATATSLRLTHSLRRRITHHISLTFALHSFDKKLA 60
           MV + GA PLGFPL+LEPT  P+DLFATA SLRL   LRRRITHH+ L+F  +SF KK A
Sbjct: 1   MVANYGATPLGFPLYLEPT--PVDLFATAASLRLGRLLRRRITHHLCLSFTHYSFHKKFA 60

Query: 61  PLIEVSSKLKSAWCSRALRFPGLNFLEVSKDILSSTHAACLYFFGGGDTGSSLKNEATSH 120
           PL ++SSK+K AWC RAL FPGLNFLEVSKDI+SS ++ACL+ FGGG TG+SL+NE  S 
Sbjct: 61  PLNDISSKVKDAWCPRALHFPGLNFLEVSKDIISSNYSACLFLFGGGKTGNSLRNERKSD 120

Query: 121 WKTSNRNPQNDRRWTTILLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSF 180
           WKTSNRNP N++RWT ILL VNIL +LAQVAS+GKLLLWG+KIN LIDQGQLWRLVTSSF
Sbjct: 121 WKTSNRNPLNNQRWTNILLAVNILTYLAQVASQGKLLLWGAKINGLIDQGQLWRLVTSSF 180

Query: 181 LHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGA 240
           LHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSS+SYWFC APSVGASGA
Sbjct: 181 LHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSVSYWFCNAPSVGASGA 240

Query: 241 IFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVA 300
           IFGLVGSFA FVVRHRKLVGRG EDL+HIAHII+LNMAIGMMS GIDNWGH+GGF+GG A
Sbjct: 241 IFGLVGSFAVFVVRHRKLVGRGKEDLRHIAHIILLNMAIGMMSTGIDNWGHVGGFIGGAA 300

Query: 301 ASWLLGPAWKQEPSFNNGRITFTDRAPIFYLINWRKRT 339
            SWLLGPAWK E S   G   F+D+APIFYLINWRKRT
Sbjct: 301 ISWLLGPAWKHESSSAFGGTAFSDKAPIFYLINWRKRT 336

[Close]

BLAST of CmoCh19G003280 vs. ExPASy TrEMBL
Match: A0A7N2RCU7 (Rhomboid domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 1.1e-112
Identity = 207/341 (60.70%), Postives = 255/341 (74.78%), Query Frame = 0


Query: 1   MVGSSGAGPLGFPLF-LEPTAGPLDLFATATSLRLTHSLRRRITHHISLTFALHS----F 60
           MVGS+   PL F +  + P    L+L  TA    + H L+ R++HH+ L F  HS    F
Sbjct: 1   MVGSAFPQPLWFSVSEVGPAPTSLNLITTAGCFHVGHLLQHRVSHHLRLGFLFHSSSSCF 60

Query: 61  DKKLAPLIEVSSKLKSAWCSRALRFPGLNFLEVSKDILSSTHAACLYFFGGGDTGSSLKN 120
            KK++ L  V  +LK  WC + L+F   NFL++SKD L++T++ C  FF GG+T     N
Sbjct: 61  FKKVSRLGHV-PRLKDVWCEKDLQFKEFNFLQLSKDTLTATYSTCSSFFNGGETRKDFGN 120

Query: 121 EATSHWKTSNRNPQNDRRWTTILLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRL 180
           +  SH K S+RN  N RRWT ILL VN+L F+AQ A++G+L+LWG+KIN+LID+GQ WRL
Sbjct: 121 DRASHSKISSRNSFNGRRWTNILLAVNVLIFIAQTATQGQLILWGAKINSLIDKGQFWRL 180

Query: 181 VTSSFLHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSV 240
           VTSSFLHANIGHLMVNCYSLNS+GP+ E ISG RRFLAVYFASAI+SS MSYWFCKAP+V
Sbjct: 181 VTSSFLHANIGHLMVNCYSLNSLGPSAENISGPRRFLAVYFASAISSSVMSYWFCKAPAV 240

Query: 241 GASGAIFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGF 300
           GASGAIFGL+G+ A F  RHR+LVGRG EDLQHIA +I+LNM IG+ S+GIDNWGHLGGF
Sbjct: 241 GASGAIFGLIGAVAVFATRHRQLVGRGKEDLQHIAQVIVLNMVIGLFSKGIDNWGHLGGF 300

Query: 301 LGGVAASWLLGPAWKQEPSFNNGRITFTDRAPIFYLINWRK 337
           LGG AASWLLGP+WK E   ++GR  F DRAPIFYLI  ++
Sbjct: 301 LGGAAASWLLGPSWKYESMSSDGRRIFADRAPIFYLIKKKR 340

[Close]

BLAST of CmoCh19G003280 vs. ExPASy TrEMBL
Match: A0A2I4FV26 (RHOMBOID-like protein 10, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC109002280 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 5.7e-112
Identity = 201/315 (63.81%), Postives = 245/315 (77.78%), Query Frame = 0


Query: 18  PTAGPLDLFATATSLRLTHSLRRRITHHISLTFALHSFDKKLAPLIEVSSKLKSAWCSRA 77
           PT+ PL L  TA SL + + LR  ++H + L   LHS  +KL+ L  V  +LK  W  + 
Sbjct: 21  PTSRPLSLATTAASLHIGYLLRFHVSHRLELGLLLHSCFQKLSCLDHV-PRLKDVWHEKT 80

Query: 78  LRFPGLNFLEVSKDILSSTHAACLYFFGGGDTGSSLKNEATSHWKTSNRNPQNDRRWTTI 137
           L+F G+NFL++SKD ++ST++ CL FF GG+  +  +N+   H K S++N  + RRWT I
Sbjct: 81  LQFRGINFLQLSKDAVTSTYSTCLSFFDGGEKRNGFRNDGVPHSKISSKNSFDGRRWTNI 140

Query: 138 LLGVNILAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSFLHANIGHLMVNCYSLNS 197
           LL  N+L F+AQ A++GKLLLWG+KIN+LID GQLWRL TSSFLHANIGHLMVNCYSLNS
Sbjct: 141 LLAANVLVFIAQTATQGKLLLWGAKINSLIDAGQLWRLATSSFLHANIGHLMVNCYSLNS 200

Query: 198 IGPAVEKISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGAIFGLVGSFAAFVVRHRK 257
           IGP+ EKISG RRFLAVYFASAIASS+MSYWFCKAP+VGASGAIFGLVG+ A FV+RHR+
Sbjct: 201 IGPSAEKISGPRRFLAVYFASAIASSAMSYWFCKAPAVGASGAIFGLVGTVAVFVMRHRQ 260

Query: 258 LVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVAASWLLGPAWKQEPSFNN 317
           LVG G EDLQHIA +++LNM IG++S+GIDNWGHLGG LGG A SWLLGPAWK E    +
Sbjct: 261 LVGGGKEDLQHIARVVVLNMTIGLLSKGIDNWGHLGGLLGGAATSWLLGPAWKYESVSKD 320

Query: 318 GRITFTDRAPIFYLI 333
           GR  F DRAPIFYLI
Sbjct: 321 GRRVFADRAPIFYLI 334

[Close]

BLAST of CmoCh19G003280 vs. TAIR 10
Match: AT1G25290.2 (RHOMBOID-like protein 10 )

HSP 1 Score: 330.9 bits (847), Expect = 1.2e-90
Identity = 170/312 (54.49%), Postives = 218/312 (69.87%), Query Frame = 0


Query: 26  FATATSLRLTHSLRRRITHHISLTFALHSFDKKLAPLIEVSSKLKSAWCSRALRFPGLNF 85
           FATA S+   H     ++ H+ L F L S  KKL    +  +++K A   R   F G NF
Sbjct: 24  FATAASVHACH----HVSRHLRLDFHLRSSLKKLQHFSD-DARMKFARYQRVFVFNGANF 83

Query: 86  LEVSKDILSSTHAACLYFFGGGDTGSSLK--NEATSHWKTSNRNPQNDRRWTTILLGVNI 145
           L+   DI  S  +  + FF GG++  + +   E +S+ +TS RN  N RRWT +LL +N+
Sbjct: 84  LKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAINV 143

Query: 146 LAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVE 205
           + ++AQ+AS+GK+L WG+KIN+LI++GQLWRL T+S LHAN  HLM+NCYSLNSIGP  E
Sbjct: 144 IMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAE 203

Query: 206 KISGTRRFLAVYFASAIASSSMSYWFCKAPSVGASGAIFGLVGSFAAFVVRHRKLVGRGN 265
            + G +RFLAVY  SA+ASS+MSYWF KAPSVGASGAIFGLVGS A FV+RH+++V  GN
Sbjct: 204 SLGGPKRFLAVYLTSAVASSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGN 263

Query: 266 EDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVAASWLLGPAWKQEPSFNNGRITFT 325
           EDL  IA II LNMA+G+MSR IDNWGH+GG LGG A +WLLGP WK E +  +GR  F 
Sbjct: 264 EDLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVFM 323

Query: 326 DRAPIFYLINWR 336
           D API  L+ WR
Sbjct: 324 DSAPIPLLLRWR 330

[Close]

BLAST of CmoCh19G003280 vs. TAIR 10
Match: AT1G25290.1 (RHOMBOID-like protein 10 )

HSP 1 Score: 322.4 bits (825), Expect = 4.3e-88
Identity = 169/319 (52.98%), Postives = 217/319 (68.03%), Query Frame = 0


Query: 26  FATATSLRLTHSLRRRITHHISLTFALHSFDKKLAPLIEVSSKLKSAWCSRALRFPGLNF 85
           FATA S+   H     ++ H+ L F L S  KKL    +  +++K A   R   F G NF
Sbjct: 24  FATAASVHACH----HVSRHLRLDFHLRSSLKKLQHFSD-DARMKFARYQRVFVFNGANF 83

Query: 86  LEVSKDILSSTHAACLYFFGGGDTGSSLK--NEATSHWKTSNRNPQNDRRWTTILLGVNI 145
           L+   DI  S  +  + FF GG++  + +   E +S+ +TS RN  N RRWT +LL +N+
Sbjct: 84  LKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAINV 143

Query: 146 LAFLAQVASEGKLLLWGSKINALIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVE 205
           + ++AQ+AS+GK+L WG+KIN+LI++GQLWRL T+S LHAN  HLM+NCYSLNSIGP  E
Sbjct: 144 IMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAE 203

Query: 206 KISGTRRFLAVYFASAIA-------SSSMSYWFCKAPSVGASGAIFGLVGSFAAFVVRHR 265
            + G +RFLAVY  SA+A        S+MSYWF KAPSVGASGAIFGLVGS A FV+RH+
Sbjct: 204 SLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHK 263

Query: 266 KLVGRGNEDLQHIAHIIILNMAIGMMSRGIDNWGHLGGFLGGVAASWLLGPAWKQEPSFN 325
           ++V  GNEDL  IA II LNMA+G+MSR IDNWGH+GG LGG A +WLLGP WK E +  
Sbjct: 264 QMVRGGNEDLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTTR 323

Query: 326 NGRITFTDRAPIFYLINWR 336
           +GR  F D API  L+ WR
Sbjct: 324 DGRRVFMDSAPIPLLLRWR 337

[Close]

BLAST of CmoCh19G003280 vs. TAIR 10
Match: AT1G52580.1 (RHOMBOID-like protein 5 )

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-16
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 160 GSKINALIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASA 219
           G+    L+++G+ WRL++  +LH    HLM N  SL  IG  +E+  G  R  A+Y  S 
Sbjct: 94  GALERRLVEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISG 153

Query: 220 IASSSMSYWFC------KAPSVGASGAIFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHII 279
           +  S +S   C      +  SVGASGA+FGL+G+  + ++ +  +       L  +  II
Sbjct: 154 LGGSLVS---CLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILII 213

Query: 280 ILNMAIGMMSRGIDNWGHLGGFLGGVAASWLL 306
           +LN+++G + R +DN  H GGFL G    ++L
Sbjct: 214 VLNLSVGFLPR-VDNSAHFGGFLAGFFLGFVL 241

[Close]

BLAST of CmoCh19G003280 vs. TAIR 10
Match: AT1G63120.1 (RHOMBOID-like 2 )

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-16
Identity = 51/141 (36.17%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 166 LIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASAIASSSM 225
           ++ + Q WRL++  +LHA I HL+ N  SL  IG  +E+  G  R   +Y  S +  S +
Sbjct: 104 VVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSIL 163

Query: 226 SYWFC-KAPSVGASGAIFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMAIGMMSR 285
           S  F  ++ SVGASGA+FGL+G+  + ++ +  +       L  +  II +N+A+GM+ R
Sbjct: 164 SSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGMLPR 223

Query: 286 GIDNWGHLGGFLGGVAASWLL 306
            +DN+ H+GGFL G    ++L
Sbjct: 224 -VDNFAHIGGFLTGFCLGFVL 243

[Close]

BLAST of CmoCh19G003280 vs. TAIR 10
Match: AT1G77860.1 (Rhomboid-related intramembrane serine protease family protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-15
Identity = 50/164 (30.49%), Postives = 85/164 (51.83%), Query Frame = 0


Query: 160 GSKINALIDQGQLWRLVTSSFLHANIGHLMVNCYSLNSIGPAVEKISGTRRFLAVYFASA 219
           G    AL +  ++WR++TS +LH+ + HL +N  SL  +G  +E+  G  R   +YF S 
Sbjct: 110 GLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSG 169

Query: 220 IASSSMSYWFCK-APSVGASGAIFGLVGSFAAFVVRHRKLVGRGNEDLQHIAHIIILNMA 279
           I  S  +  F +  PS+ +  A FGL+G+  + + ++  L       L  I  I  +N  
Sbjct: 170 IMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVNFL 229

Query: 280 IGMMSRGIDNWGHLGGFLGGVAASWLL--GPAWKQEPSFNNGRI 321
           IG +   IDN+ ++GGF+ G    ++L   P  +Q P  + G++
Sbjct: 230 IGFLP-FIDNFANIGGFISGFLLGFVLLFKPQLRQMPPSHKGKL 272

The following BLAST results are available for this feature:

BLAST of CmoCh19G003280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4ICF4	6.1e-87	52.98	RHOMBOID-like protein 10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBL10...	[more]
P54493	5.1e-25	39.89	Rhomboid protease GluP OS=Bacillus subtilis (strain 168) OX=224308 GN=gluP PE=1 ...	[more]
Q6IUY1	1.6e-15	42.58	Rhomboid-like protease 3 OS=Toxoplasma gondii OX=5811 GN=ROM3 PE=2 SV=1	[more]
Q9CAN1	6.2e-15	36.17	RHOMBOID-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RBL2 PE=1 SV=1	[more]
Q9SSR0	6.2e-15	34.21	RHOMBOID-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=RBL5 PE=3 SV=1	[more]

BLAST of CmoCh19G003280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJ61	1.1e-192	100.00	RHOMBOID-like protein 10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HX69	2.4e-187	97.04	RHOMBOID-like protein 10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467...	[more]
A0A6J1DL86	1.6e-151	79.29	RHOMBOID-like protein 10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A7N2RCU7	1.1e-112	60.70	Rhomboid domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2I4FV26	5.7e-112	63.81	RHOMBOID-like protein 10, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=...	[more]

BLAST of CmoCh19G003280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25290.2	1.2e-90	54.49	RHOMBOID-like protein 10	[more]
AT1G25290.1	4.3e-88	52.98	RHOMBOID-like protein 10	[more]
AT1G52580.1	4.4e-16	34.21	RHOMBOID-like protein 5	[more]
AT1G63120.1	4.4e-16	36.17	RHOMBOID-like 2	[more]
AT1G77860.1	1.7e-15	30.49	Rhomboid-related intramembrane serine protease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035952	Rhomboid-like superfamily	GENE3D	1.20.1540.10		coord: 127..310 e-value: 1.0E-43 score: 151.3
IPR035952	Rhomboid-like superfamily	SUPERFAMILY	144091	Rhomboid-like	coord: 131..311
IPR022764	Peptidase S54, rhomboid domain	PFAM	PF01694	Rhomboid	coord: 168..308 e-value: 1.5E-41 score: 141.9
None	No IPR available	PANTHER	PTHR43731:SF14	PRESENILINS-ASSOCIATED RHOMBOID-LIKE PROTEIN, MITOCHONDRIAL	coord: 80..332
None	No IPR available	PANTHER	PTHR43731	RHOMBOID PROTEASE	coord: 80..332

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003280.1	CmoCh19G003280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006465	signal peptide processing
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004252	serine-type endopeptidase activity