CmoCh19G003260 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G003260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Plant protein of unknown function (DUF639)
Location	Cmo_Chr19: 2585126 .. 2586787 (+)
RNA-Seq Expression	CmoCh19G003260
Synteny	CmoCh19G003260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTCCAGATAACCACTGAAGTGGCACTGGCGGCGTTGTGTTCTTCAATTATCCTCCTTGTTGTTCCTTTCAAGTATGTGCTATCTATGTTAATATTTGATCTCTTCACACGTGAGTTACAATTTCGACAAGAAACTGTAAAGAGATTCATGAAATTCTTGAGAGAGCGTTGGGATTCTGTGCCTGCAGCCCCTGTGGTTGTCTTACCATTTGATGATAATGAATTGAAGCCATCTTCAACTCAGCAAAAGGAAGTTGAGCAGCAACAAAAGCCAAAAGATTAGACAAATGGCCGTGACTACGGGAAGGATTCCTCTTTAGATAATAGGTACTGTAACTAGTATTCCTGTGATCGGTTTAGTCGATATTTTCTTTTATAGTTCATATTCCGGATTAGGTTCATCTCTGTAATGATCGGATGAACTGTAGACATGAAAGCGTAAGAACTCAACAGGATCCCTTCGAATCAGAAAAAAAAGAGGGGTAGGTCTCGTTGAGGGTTGCTCTCAATTTCTTTAGTGCATAAGAAAGAACTGTAAATTAATATATATACTAATAGGGTTGTTTCTAATGCAAGTTCCCTCTTGGAAAGAGAAAGAAATCAGCTTCTTTCTTGGGTGCTGGTAGTGCTTTCTTTGCTTGACAAGCTGCAGAAAGATTGTGTTGATTTGTTTTGAAGTCCTTTTTCTTTGTTACTTTGGGTTATAAACTCTAATATTGTTGAACTGTTAATTAATTTCGTTACACAATCGGAATGAAAACACCACGTATTTGTTTTAGGGATTGGCGACTTATCCATTTAGTGACTGTCACTGGATGTTCCGAAAATGGGGTACTATCGGATTGGGTGGCATTCCAGCCTTCTTCTCCTTTTAGGGCCTACCCAAAAGAGAATCTAGTGTTTTTTGGTCGTGAATGAATAGGATGAACCGCCCCGTAGTTCGCTTCGGAACTAAACAATTAGAATTAGGCTCATTGAAATGGAATGTGTATTATCCATACAGGGGATCTTTCAATGGAGAAGATTCATCGACCTAAGAGGAAGAGAAGGTCTATCTATTTTATTTAATTATTCAGTTAAACCAATGATTTATTACGAATTGTAACAGATAGCAACAAATATTTCATCCGGCATGTATATTTTTTCGTTTTCGGAAGATGAACAAATCCTTCCGGATTCCTAATGGTGCACATTTTCCCAGGTAAATTTCATCTATTAGTTATTGTTTAAATCGTTTTGGCCCATATCGTTCAGTTCAGACCATGCGGTGATGCGTTCATATAGAGTGTTACTTCAAGAACGTCTTAGATTTCTTGATGAATCTTGTGGAAGTTTTTCTGTTTTACTTACTTAAACTTCTAAGCTTGCCTAGTTACAGTGTGTCACTACATTGTGGTATTTATATTGGCATATTACATTCAACTTCTGGTTGCAGGAAAGATCGCCGAATACCTCTTCCAATGTTCATTTCAGTGCTGCAGCCCACTATAACTTTCTTCTCGGCGTTTGAGGTTTAGAGTCTAGAGTTTAAGGTTCGAGGTTCAAATGTAACTTCGTGCTCAAGTCTCTGTAGCAATGACTGAATTATGAAATTCCTGTCACCATCAGAGAATTTTAAGGGTTTAAATCTTTTTATGTTATTATGGTTTATGCTTGG

mRNA sequence

ATGCCTTTCCAGATAACCACTGAAGTGGCACTGGCGGCGTTGTGTTCTTCAATTATCCTCCTTGTTGTTCCTTTCAAGTATGTGCTATCTATGTTAATATTTGATCTCTTCACACGTGAGTTACAATTTCGACAAGAAACTGTAAAGAGATTCATGAAATTCTTGAGAGAGCGTTGGGATTCTGTGCCTGCAGCCCCTGTGATGAACAAATCCTTCCGGATTCCTAATGGTGCACATTTTCCCAGGAAAGATCGCCGAATACCTCTTCCAATGTTCATTTCAGTGCTGCAGCCCACTATAACTTTCTTCTCGGCGTTTGAGGTTTAGAGTCTAGAGTTTAAGGTTCGAGGTTCAAATGTAACTTCGTGCTCAAGTCTCTGTAGCAATGACTGAATTATGAAATTCCTGTCACCATCAGAGAATTTTAAGGGTTTAAATCTTTTTATGTTATTATGGTTTATGCTTGG

Coding sequence (CDS)

ATGCCTTTCCAGATAACCACTGAAGTGGCACTGGCGGCGTTGTGTTCTTCAATTATCCTCCTTGTTGTTCCTTTCAAGTATGTGCTATCTATGTTAATATTTGATCTCTTCACACGTGAGTTACAATTTCGACAAGAAACTGTAAAGAGATTCATGAAATTCTTGAGAGAGCGTTGGGATTCTGTGCCTGCAGCCCCTGTGATGAACAAATCCTTCCGGATTCCTAATGGTGCACATTTTCCCAGGAAAGATCGCCGAATACCTCTTCCAATGTTCATTTCAGTGCTGCAGCCCACTATAACTTTCTTCTCGGCGTTTGAGGTTTAG

Protein sequence

MPFQITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVPAAPVMNKSFRIPNGAHFPRKDRRIPLPMFISVLQPTITFFSAFEV

Homology

[Close]

BLAST of CmoCh19G003260 vs. ExPASy TrEMBL
Match: A0A6J1HX34 (uncharacterized protein LOC111467032 OS=Cucurbita maxima OX=3661 GN=LOC111467032 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.2e-24
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP
Sbjct: 725 QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 784

Query: 64  AAPVM 69
           AAPV+
Sbjct: 785 AAPVV 789

[Close]

BLAST of CmoCh19G003260 vs. ExPASy TrEMBL
Match: A0A6J1HG64 (uncharacterized protein LOC111463987 OS=Cucurbita moschata OX=3662 GN=LOC111463987 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.2e-24
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP
Sbjct: 725 QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 784

Query: 64  AAPVM 69
           AAPV+
Sbjct: 785 AAPVV 789

[Close]

BLAST of CmoCh19G003260 vs. ExPASy TrEMBL
Match: A0A6J1DS40 (uncharacterized protein LOC111023786 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023786 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.6e-21
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+IILL+VPFKYV+S+LIFDLFTRELQFRQETVKRFMKFLRERWDSVP
Sbjct: 587 QITTEVALVVLSSAIILLIVPFKYVISVLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 646

Query: 64  AAPVM 69
           AAPV+
Sbjct: 647 AAPVV 651

[Close]

BLAST of CmoCh19G003260 vs. ExPASy TrEMBL
Match: A0A6J1DTB7 (uncharacterized protein LOC111023786 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023786 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.6e-21
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+IILL+VPFKYV+S+LIFDLFTRELQFRQETVKRFMKFLRERWDSVP
Sbjct: 726 QITTEVALVVLSSAIILLIVPFKYVISVLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 785

Query: 64  AAPVM 69
           AAPV+
Sbjct: 786 AAPVV 790

[Close]

BLAST of CmoCh19G003260 vs. ExPASy TrEMBL
Match: A0A5D3BB47 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001300 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVAL  L S+IILL+VPF YVLS+LIFDLFTRELQFRQETVKRFMKFLRERWDSVP
Sbjct: 236 QITTEVALVLLASAIILLIVPFNYVLSVLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 295

Query: 64  AAPVM 69
           A+PV+
Sbjct: 296 ASPVV 300

[Close]

BLAST of CmoCh19G003260 vs. TAIR 10
Match: AT1G71240.1 (Plant protein of unknown function (DUF639) )

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-17
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVALA L  + +L++VPFKYVL+ +++D FTREL+FR+E VK+F  FLRERW+ VP
Sbjct: 733 QITTEVALAMLSIATVLVIVPFKYVLAFVLYDQFTRELEFRKEMVKKFNAFLRERWEMVP 792

Query: 64  AAPVM 69
           AAPV+
Sbjct: 793 AAPVI 797

[Close]

BLAST of CmoCh19G003260 vs. TAIR 10
Match: AT1G71240.2 (Plant protein of unknown function (DUF639) )

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-17
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           QITTEVALA L  + +L++VPFKYVL+ +++D FTREL+FR+E VK+F  FLRERW+ VP
Sbjct: 732 QITTEVALAMLSIATVLVIVPFKYVLAFVLYDQFTRELEFRKEMVKKFNAFLRERWEMVP 791

Query: 64  AAPVM 69
           AAPV+
Sbjct: 792 AAPVI 796

[Close]

BLAST of CmoCh19G003260 vs. TAIR 10
Match: AT5G23390.1 (Plant protein of unknown function (DUF639) )

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-05
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           Q T   A++ +  ++IL VVP KY++++   + FTRE+ +R+ +  R  + +RE W  VP
Sbjct: 654 QATDTTAISLVVVAVILAVVPVKYLITVAFVEWFTREVGWRKASSDRLERRIREWWFRVP 713

Query: 64  AAPV 68
           AAPV
Sbjct: 714 AAPV 717

[Close]

BLAST of CmoCh19G003260 vs. TAIR 10
Match: AT3G18350.1 (Plant protein of unknown function (DUF639) )

HSP 1 Score: 44.7 bits (104), Expect = 5.6e-05
Identity = 24/65 (36.92%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 4   QITTEVALAALCSSIILLVVPFKYVLSMLIFDLFTRELQFRQETVKRFMKFLRERWDSVP 63
           Q + + A+A + ++ ++  VP +Y+LS++  +LFTR    R+ + +R ++ LRE W S+P
Sbjct: 616 QASQKFAIAIVVAATMMAFVPGRYLLSVVFVELFTRYSPPRRASTERLIRRLREWWFSIP 675

Query: 64  AAPVM 69
           AAPV+
Sbjct: 676 AAPVV 680

The following BLAST results are available for this feature:

BLAST of CmoCh19G003260 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G003260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HX34	3.2e-24	98.46	uncharacterized protein LOC111467032 OS=Cucurbita maxima OX=3661 GN=LOC111467032...	[more]
A0A6J1HG64	3.2e-24	98.46	uncharacterized protein LOC111463987 OS=Cucurbita moschata OX=3662 GN=LOC1114639...	[more]
A0A6J1DS40	5.6e-21	87.69	uncharacterized protein LOC111023786 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DTB7	5.6e-21	87.69	uncharacterized protein LOC111023786 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5D3BB47	2.8e-20	86.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh19G003260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71240.1	4.9e-17	64.62	Plant protein of unknown function (DUF639)	[more]
AT1G71240.2	4.9e-17	64.62	Plant protein of unknown function (DUF639)	[more]
AT5G23390.1	2.5e-05	39.06	Plant protein of unknown function (DUF639)	[more]
AT3G18350.1	5.6e-05	36.92	Plant protein of unknown function (DUF639)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006927	Protein of unknown function DUF639	PFAM	PF04842	DUF639	coord: 4..70 e-value: 1.2E-20 score: 73.9
None	No IPR available	PANTHER	PTHR31860	HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639)-RELATED	coord: 4..73
None	No IPR available	PANTHER	PTHR31860:SF3	PROTEIN, PUTATIVE (DUF639)-RELATED	coord: 4..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003260.1	CmoCh19G003260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane