CmoCh19G002980 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G002980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Glycine-rich RNA-binding protein like
Location	Cmo_Chr19: 2198946 .. 2200285 (+)
RNA-Seq Expression	CmoCh19G002980
Synteny	CmoCh19G002980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTCTTCGGCCTACAACCCGTTTAACAATCTCACCGTCACTTCGGCTCTTAGATTTTTTTGATTCTTGTAGCTTCTCTCGATAGCGAATCGAATTCGTAAGGCTTTTGTTCTTCAGAAATTGTTAGCGTAATTCTGGTAATTCTTTTCTCTCTTTACATTTTATGATTCTGATAATTCAATTTATCTGGATAAGAGTATCGAATTGATATGTATCCAATTGCTTAATCAGGTTAATTGTGCTATTTTGATTCTTCGGATCGAGAAAGTTTTTGAGTATTTTCTTCTGTTTTAAATCCGTTGGATTTCAATGAGTTACTTGCGTTTTCTTTTAATCTCGGGGTTTTTCGAATTGTTCGCCACTCTTCCCACTTCGGGAAATTCAATTGATTTGACTATGGCTCTTCGATGAAGCTTGCATAATGGCGGAAGAGGTGGAGTATCGCTGTTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTTTGAAAGATGCGTTTGAAAAGTTTGGCCATCTTCTCGAGGCCAAGGTATCTGATTTGTTTTTCTTGCGCTTACTCTTCTGTCATCCTTTTTTAGCTGATTATAGTCTTAATTCTTTCTGCTGGAATGTGAGTCCTCCAATTTTCTTACTCCGGATGGATATTGCTTGCTGCTCCTTGAATAATGATTCTTCATTCTTGTATTGATCCGTGTTTGTAGATAGAAATGTGAAAAATGTAAGGTTGGTGCTTGTTGCATTTGATAATTTGGATGATAGCTTAAGGTCTCTGTTCCTTAGGATTTTCCATAGTCACCTGTGATTTTGATAATGCATCATCCATTTCACAGGTAGTTGTTGACAAGTTTTCTGGACGTTCTCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGAAGAGGCAATCAAAGGCATGAATGGAATTGATTTAGATGGCCGGACTATTACAGTTGATAAGGCTCAGCCAAACCAAGGTTCAGGTAAAGATCATGATGGTGATCGTCCACGTGGTCGTGATCGAGGTCGGGATTTTGGAGGTGGACGTGGATCTAACGGTGGAGATTGCTTTAAATGCGGGAAGCCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTAGATATGGAAGTAGGGATGACAGATATGGTAGTGGTGGTGGTGGCAGTGGTCGATATGGTCCAGATAGAAATGGAGATAGATCTGGTGGGCGCAATCGGGGTAGTACCGGTGATCGAGGAGGTTCAGGAAATGATCGATATAGTCGTGACCGCTCTGGGCCATATGAGCGACGTGGTTCTGGTGGTTCTCGTTCTGGATAG

mRNA sequence

AGCTCTTCGGCCTACAACCCGTTTAACAATCTCACCGTCACTTCGGCTCTTAGATTTTTTTGATTCTTGTAGCTTCTCTCGATAGCGAATCGAATTCGTAAGGCTTTTGTTCTTCAGAAATTGTTAGCGTAATTCTGCTTGCATAATGGCGGAAGAGGTGGAGTATCGCTGTTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTTTGAAAGATGCGTTTGAAAAGTTTGGCCATCTTCTCGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCTCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGAAGAGGCAATCAAAGGCATGAATGGAATTGATTTAGATGGCCGGACTATTACAGTTGATAAGGCTCAGCCAAACCAAGGTTCAGGTAAAGATCATGATGGTGATCGTCCACGTGGTCGTGATCGAGGTCGGGATTTTGGAGGTGGACGTGGATCTAACGGTGGAGATTGCTTTAAATGCGGGAAGCCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTAGATATGGAAGTAGGGATGACAGATATGGTAGTGGTGGTGGTGGCAGTGGTCGATATGGTCCAGATAGAAATGGAGATAGATCTGGTGGGCGCAATCGGGGTAGTACCGGTGATCGAGGAGGTTCAGGAAATGATCGATATAGTCGTGACCGCTCTGGGCCATATGAGCGACGTGGTTCTGGTGGTTCTCGTTCTGGATAG

Coding sequence (CDS)

ATGGCGGAAGAGGTGGAGTATCGCTGTTTTATTGGCGGCCTTTCTTGGTCAACATCTGACAGAGGTTTGAAAGATGCGTTTGAAAAGTTTGGCCATCTTCTCGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCTCGTGGTTTTGGATTTGTCACTTTTGATGAGAAAAAAGCTATGGAAGAGGCAATCAAAGGCATGAATGGAATTGATTTAGATGGCCGGACTATTACAGTTGATAAGGCTCAGCCAAACCAAGGTTCAGGTAAAGATCATGATGGTGATCGTCCACGTGGTCGTGATCGAGGTCGGGATTTTGGAGGTGGACGTGGATCTAACGGTGGAGATTGCTTTAAATGCGGGAAGCCTGGACATTTTGCTAGGGAATGTCCCAGTGAAGGTGGTAGAGGAGGTAGATATGGAAGTAGGGATGACAGATATGGTAGTGGTGGTGGTGGCAGTGGTCGATATGGTCCAGATAGAAATGGAGATAGATCTGGTGGGCGCAATCGGGGTAGTACCGGTGATCGAGGAGGTTCAGGAAATGATCGATATAGTCGTGACCGCTCTGGGCCATATGAGCGACGTGGTTCTGGTGGTTCTCGTTCTGGATAG

Protein sequence

MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFKCGKPGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGDRGGSGNDRYSRDRSGPYERRGSGGSRSG

Homology

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BLAST of CmoCh19G002980 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.4e-62
Identity = 146/251 (58.17%), Postives = 170/251 (67.73%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+E+ EYRCFIGGL+W+TSDRGL+DAFEK+GHL+EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQ-GSGKDHDGDRPRGRDRGRDF-----GGGRGSN 120
           M+EAI  MNG+DLDGRTITVDKAQP+Q G+G+D+DGD  RGRDRG D       GGRG  
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGD--RGRDRGYDRDRSRPSGGRG-- 120

Query: 121 GGDCFKCGKPGHFARECPSEGGRGG----------------------------------- 180
           GGDCFKCGKPGHFARECPSE  R G                                   
Sbjct: 121 GGDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAK 180

Query: 181 ---------RYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGDRGGSGNDRYSRDR 202
                    RY S+DDRYGS  GG  RYGPDR+G+R+GGR+R   G RG  G +R+SR  
Sbjct: 181 DDRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRDG-GSRGAPGGERHSR-- 240

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BLAST of CmoCh19G002980 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-28
Identity = 81/171 (47.37%), Postives = 104/171 (60.82%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
           +VEYRCF+GGL W+T D+ L++AF K+G ++++K++ D+ +GRSRGFGFVTF   +AM +
Sbjct: 3   DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62

Query: 64  AIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFKCGK 123
           AI+ MNG DLDGR ITV++AQ  +  G             G  FGGG G  GG   + G 
Sbjct: 63  AIEAMNGQDLDGRNITVNEAQSRRSDG-------------GGGFGGGGGGYGGQRREGGG 122

Query: 124 PGHFARECPSEGGR---GGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRN 172
            G+        GGR   GG YGSRD   G  GGG G YG  R G  SGG N
Sbjct: 123 GGYGGGGGGYGGGRSGGGGGYGSRDGGGGGYGGGGGGYGGSRGG--SGGGN 158

[Close]

BLAST of CmoCh19G002980 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.1e-28
Identity = 85/179 (47.49%), Postives = 112/179 (62.57%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G +L++K++ D+ +GRSRGFGFVTF ++K+M++
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64

Query: 64  AIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFKCGK 123
           AI+GMNG DLDGR+ITV++AQ ++GSG         G   GR  GGG  S GG  +  G 
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSG---------GGGGGRGGGGGYRSGGGGGYGGGG 124

Query: 124 PGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGDRGGSG 183
            G+        GGR G Y      Y S GGG G YG    G R GG   G  G  GG G
Sbjct: 125 GGY------GGGGREGGYSGGGGGYSSRGGGGGGYG--GGGRRDGGEGGGYGGSGGGGG 165

[Close]

BLAST of CmoCh19G002980 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.7e-28
Identity = 82/185 (44.32%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM++
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64  AIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFKCGK 123
           AI+GMNG DLDGR+ITV++AQ                  RG   GGG    GG  ++ G 
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-----------------SRGSGGGGGHRGGGGGGYRSGG 124

Query: 124 PGHFARECPSEGGRGGR------YGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGD 183
            G ++    S GG GGR      Y      Y S GGG G YG  R  +  GG   G  G 
Sbjct: 125 GGGYSGGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRR-EGGGGYGGGEGGG 171

[Close]

BLAST of CmoCh19G002980 vs. ExPASy Swiss-Prot
Match: Q03251 (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.4e-27
Identity = 87/180 (48.33%), Postives = 113/180 (62.78%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
           EVEYRCF+GGL+W+T+D  L+  F +FG ++++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 64  AIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFKCGK 123
           AI+ MNG +LDGR ITV++AQ ++GSG         G  RG   GGG  S GG  +  G 
Sbjct: 63  AIEEMNGKELDGRVITVNEAQ-SRGSGGG-------GGGRGGS-GGGYRSGGGGGYSGGG 122

Query: 124 PGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGR---YGPDRNGDRSGGRNRGSTGDRGG 181
            G ++      GG GG Y  R   YGSGGGG GR    G  R G   GG + GS G  GG
Sbjct: 123 GGGYS------GGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGGG 167

[Close]

BLAST of CmoCh19G002980 vs. ExPASy TrEMBL
Match: A0A6J1HH58 (glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita moschata OX=3662 GN=LOC111464015 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.2e-108
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFK 120
           MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFK
Sbjct: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFK 120

Query: 121 CGKPGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGDRGG 180
           CGKPGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGDRGG
Sbjct: 121 CGKPGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGDRGG 180

Query: 181 SGNDRYSRDRSGPYERRGSGGSRSG 206
           SGNDRYSRDRSGPYERRGSGGSRSG
Sbjct: 181 SGNDRYSRDRSGPYERRGSGGSRSG 205

[Close]

BLAST of CmoCh19G002980 vs. ExPASy TrEMBL
Match: A0A6J1HVL9 (glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita maxima OX=3661 GN=LOC111467070 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.2e-101
Identity = 198/205 (96.59%), Postives = 199/205 (97.07%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFK 120
           MEEAIKGMNGIDLDGRTITVDKAQPNQGSG+DHDGDRPRGRDRGRD G GRGSNGGDCFK
Sbjct: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGRDHDGDRPRGRDRGRDLGAGRGSNGGDCFK 120

Query: 121 CGKPGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGDRGG 180
           CGKPGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRG TGDRGG
Sbjct: 121 CGKPGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRG-TGDRGG 180

Query: 181 SGNDRYSRDRSGPYERRGSGGSRSG 206
           SGNDRYSRDRSGPYERR   GSRSG
Sbjct: 181 SGNDRYSRDRSGPYERR---GSRSG 201

[Close]

BLAST of CmoCh19G002980 vs. ExPASy TrEMBL
Match: A0A1S3C164 (glycine-rich RNA-binding protein RZ1A OS=Cucumis melo OX=3656 GN=LOC103495449 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.1e-94
Identity = 188/214 (87.85%), Postives = 197/214 (92.06%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLK+AFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRG-----RDRGRDFGGGRGSNG 120
           M+EAIK MNG+DLDGR+ITVDKAQPNQGSG+DHDGDRPRG     RDRGRDFGG RGSN 
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGGRYGSRDDRY----GSGGGGSGRYGPDRNGDRSGGRN 180
           GDCFKCGKPGHFARECPSEGGRGGRYG RDD+Y    G GGGGSGRYGPDRNGDR GGRN
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKYGGGGGGGGGGSGRYGPDRNGDRFGGRN 180

Query: 181 RGSTGDRGGSGNDRYSRDRSGPYERRGSGGSRSG 206
           R STGDRGGSG+DRYSRDRSGPYERRGSGG RSG
Sbjct: 181 R-STGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 213

[Close]

BLAST of CmoCh19G002980 vs. ExPASy TrEMBL
Match: A0A6J1DLZ2 (glycine-rich RNA-binding protein RZ1A OS=Momordica charantia OX=3673 GN=LOC111021672 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 184/208 (88.46%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEEVEYRCFIGGLSWSTSDR LK+AFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRSLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRG----RDRGRDFGGGRGSNGG 120
           M+EAIK MNG+DLDGR+ITVDKAQPNQGSG+DHDGDRPRG    RDR RDFGGGRGSN G
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120

Query: 121 DCFKCGKPGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTG 180
           DCFKCGKPGHFARECPSEGGRGGRYG RDD+Y SGGGGSGRYGPDRNGDR GGRNR S+G
Sbjct: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNR-SSG 180

Query: 181 DRGGSGNDRYSRDRSGPYERRGSGGSRS 205
           DRGGSG+DR++RDRSGPYERR SGG RS
Sbjct: 181 DRGGSGSDRHNRDRSGPYERRSSGGFRS 207

[Close]

BLAST of CmoCh19G002980 vs. ExPASy TrEMBL
Match: A0A0A0K5W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.0e-92
Identity = 186/212 (87.74%), Postives = 196/212 (92.45%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLK+AFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRG-----RDRGRDFGGGRGSNG 120
           M+EAIK MNG+DLDGR+ITVDKAQPNQGSG+DHDGDRPRG     RDRGRDFGG RGSN 
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGR-GGRYGSRDDRY-GSGGGGSGRYGPDRNGDRSGGRNRG 180
           GDCFKCGKPGHFARECPSEGGR GGRYG RDD+Y G GGGG GRYGPDRNGDR GGRNR 
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGGRYGPDRNGDRFGGRNR- 180

Query: 181 STGDRGGSGNDRYSRDRSGPYERRGSGGSRSG 206
           S+GDRGGSG+DRYSRDRSGPYERRGSGG RSG
Sbjct: 181 SSGDRGGSGSDRYSRDRSGPYERRGSGGFRSG 211

[Close]

BLAST of CmoCh19G002980 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 238.8 bits (608), Expect = 3.8e-63
Identity = 146/251 (58.17%), Postives = 170/251 (67.73%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+E+ EYRCFIGGL+W+TSDRGL+DAFEK+GHL+EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQ-GSGKDHDGDRPRGRDRGRDF-----GGGRGSN 120
           M+EAI  MNG+DLDGRTITVDKAQP+Q G+G+D+DGD  RGRDRG D       GGRG  
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGD--RGRDRGYDRDRSRPSGGRG-- 120

Query: 121 GGDCFKCGKPGHFARECPSEGGRGG----------------------------------- 180
           GGDCFKCGKPGHFARECPSE  R G                                   
Sbjct: 121 GGDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAK 180

Query: 181 ---------RYGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGDRGGSGNDRYSRDR 202
                    RY S+DDRYGS  GG  RYGPDR+G+R+GGR+R   G RG  G +R+SR  
Sbjct: 181 DDRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRDG-GSRGAPGGERHSR-- 240

[Close]

BLAST of CmoCh19G002980 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-29
Identity = 82/185 (44.32%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM++
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64  AIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFKCGK 123
           AI+GMNG DLDGR+ITV++AQ                  RG   GGG    GG  ++ G 
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-----------------SRGSGGGGGHRGGGGGGYRSGG 124

Query: 124 PGHFARECPSEGGRGGR------YGSRDDRYGSGGGGSGRYGPDRNGDRSGGRNRGSTGD 183
            G ++    S GG GGR      Y      Y S GGG G YG  R  +  GG   G  G 
Sbjct: 125 GGGYSGGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRR-EGGGGYGGGEGGG 171

[Close]

BLAST of CmoCh19G002980 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-29
Identity = 78/164 (47.56%), Postives = 103/164 (62.80%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM++
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64  AIKGMNGIDLDGRTITVDKAQP-NQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFKCG 123
           AI+GMNG DLDGR+ITV++AQ    G G  H G    G   GR  GGG  S GG  +   
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGSYGGGGGRREGGGGYSGGGGGYS-- 124

Query: 124 KPGHFARECPSEGGRGGRYGS--RDDRYGSGGGGSGRYGPDRNG 165
                     S GG GG YG   R+   G GGG  G YG    G
Sbjct: 125 ----------SRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGG 156

[Close]

BLAST of CmoCh19G002980 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 122.1 bits (305), Expect = 5.2e-28
Identity = 87/180 (48.33%), Postives = 113/180 (62.78%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEE 63
           EVEYRCF+GGL+W+T+D  L+  F +FG ++++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 64  AIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRGRDFGGGRGSNGGDCFKCGK 123
           AI+ MNG +LDGR ITV++AQ ++GSG         G  RG   GGG  S GG  +  G 
Sbjct: 63  AIEEMNGKELDGRVITVNEAQ-SRGSGGG-------GGGRGGS-GGGYRSGGGGGYSGGG 122

Query: 124 PGHFARECPSEGGRGGRYGSRDDRYGSGGGGSGR---YGPDRNGDRSGGRNRGSTGDRGG 181
            G ++      GG GG Y  R   YGSGGGG GR    G  R G   GG + GS G  GG
Sbjct: 123 GGGYS------GGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGGG 167

[Close]

BLAST of CmoCh19G002980 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-24
Identity = 92/230 (40.00%), Postives = 124/230 (53.91%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKDAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA +   R F+GGLS   +DR L+ AF +FG +L+ ++++++ +GRSRGFGF+TF +++A
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MEEAIKGMNGIDLDGRTITVDKAQPNQGSGKDHDGDRPRGRDRG------RDFGGGRGSN 120
           M+E+I+ M+G D   R I+V++A+P  G           GRD G        FGGG G  
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 G----GDCFKCGKPGHFARECPSE-GGRGGRYG---SRDDRYGSGGGGSGRYGP-----D 180
           G     +CFKCG+ GH+AR+CPS  GGRGG  G   SR   YG   G   RY       D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RN---GDRSGGRNRGSTGDRGGS-----GNDRYSRDRSGPYERRGSGGSR 204
           R     DR  G  R    DR  S       DRY+ DR      R +GG R
Sbjct: 181 RERYIDDRYDGAARYGARDRFDSREAYIPRDRYASDRYAAPADRFAGGDR 230

The following BLAST results are available for this feature:

BLAST of CmoCh19G002980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIN3	5.4e-62	58.17	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
Q43472	2.3e-28	47.37	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
P49310	5.1e-28	47.49	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03250	6.7e-28	44.32	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
Q03251	7.4e-27	48.33	Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 ...	[more]

BLAST of CmoCh19G002980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH58	5.2e-108	100.00	glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HVL9	1.2e-101	96.59	glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A1S3C164	1.1e-94	87.85	glycine-rich RNA-binding protein RZ1A OS=Cucumis melo OX=3656 GN=LOC103495449 PE...	[more]
A0A6J1DLZ2	1.2e-93	88.46	glycine-rich RNA-binding protein RZ1A OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A0A0K5W4	1.0e-92	87.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1	[more]

BLAST of CmoCh19G002980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26420.1	3.8e-63	58.17	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G21660.1	4.7e-29	44.32	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	6.2e-29	47.56	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	5.2e-28	48.33	cold, circadian rhythm, and RNA binding 1	[more]
AT5G04280.1	3.5e-24	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 117..133 e-value: 3.5E-6 score: 36.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 118..133 e-value: 6.8E-8 score: 32.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 118..133 score: 11.564723
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 e-value: 9.8E-27 score: 104.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..79 e-value: 2.4E-20 score: 72.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..85 score: 19.535994
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..113 e-value: 4.2E-31 score: 109.9
None	No IPR available	GENE3D	4.10.60.10		coord: 114..175 e-value: 1.5E-8 score: 36.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..205
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..166
None	No IPR available	PANTHER	PTHR15241:SF289	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	coord: 1..166
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 111..136
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002980.1	CmoCh19G002980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding