CmoCh19G002730 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGGCATTAATGGCGAAGAAAGCTTCTCCCCTGCTCCATTTCGTGCGGCATTAACCAAGAACAAGAAGGCTTCTCCTTCTGCGATTTTCTTTTTTTTCCGTTTTTTGAAGCTCTAATGACGAGGGCTTTGGCGACCGGCTTGGCGGTTGAGGGATTGGAATGGTGGAATGGAATTGATGAATCGGAGCAATGGCAGAAGGGGATTTATTCCGCCTTGTCCTCCTCTTATGGCCTCCTATCGATCATTGCCTTAGTACTCCACTTTTCTCTAATCCTTACCGTGTTTTTGTTCTGTGTTTTGCAAAATTCATGAGTGATTTAATGCTTTTTTTAACCTTTTTTTTTTTTTTTTTGGCTGAGTTCTTCTTTTTATTGGAATTAACATGGCTTCCTACCTGATGGATTGAATCTATCTTCCACATTGCACTCTCATGTATCATCAAATCGACAGAATTGTGATATCTCTTTCATATTTATTTATTTATTAGGTTTTAAACTAAAATAGATTTGTGGGTGTGCTGTGTGCTTATGCTGTATGTGTGAGCTAACAAAAATGGTTAGAAGAACTGATTTTCTAGATTAATTTTTAGATATTAATTTGAGTTCCACACTCATATGAGTTGGGATTTAATCCTTCGGTAATTTTGAGTGATCAATTAATTACAAAAATTGTTTTGTAATCTCAAGAATAAAATTTCATTGAATTGCATTGGATTTGGATCTTTTATGGAAACTCAATATAGCTATCACACGTTGGTTAGGAAACAAGACCGACACTAGAGTATATGTATGGGTCTGGCAAACTCAATTAATTATGTATCAAGTCAACAGCCAAATTTGGTGAATTAGATTTAATAATTCCTTTTGGGCATCGCTATCAAAGGAATTTCATAACTGTTCTTTAGGCATAGTTCTCTTTGATTGGAGCCCTTTTATGATATAGCTAGTTGGTTTCTGATTAGGAAAAAAACAAAGGAACTTAAATTAACTTAATTGGCCGTGTTGAGGAAAAGAACACAACATGTTGTTGTCATAATTAATGCCTAATACGTAGAGTAATTGCTCAAGTTTTCAGGTTCAACTTATTCGGATTCAAATAAGAGTGCCAGAATTCGAGTGGACAACACAAAAGGGGTTCCATTTGATGAATTTCATTGTAAATGGATGTAAGATTGTATATTTGTTAGTTTTATTTTCGTATTTGATATTCTATTTGATGAGGTAATGCTACCTTAGTTTCATTTTGACAGTGAGGGCTATTATCTTTGGGCTTTATAAGAGTGTCTTCCTCATTAGACCGAAGGTTGGTTTCTTATATTAATTCACTATTGCCAACTATGATCGTCTTAAACTCTTAATGTCCTATTCAAGCCATGGTTATCACTTAATGATTGAGTATTTTTAGGCCTCATATTGATATTCTTTTGGGATTATATAAGAGTTAAAAGCATGATAATCTAAACTAAAACTTTTGATTGATCTTATTACAAGCATCTCCCCTTTGTTATTAGGTTGCACGTTTTTTCAGAATATTTCTAGAATATTCAACATATCATGATACTTAAACAGAAGACAAGGAAGAATAGAAAGAAATACTAGTAACAGCTATTCATGCACAAGTTGATTATTTATTATTATTATATTATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTATTATTTGTTTTTGTATTTATGGTAATACCATATGCAAGTTTATTTATTTCAGAACTATGAGACATCCAGAAGGGTTTCTGATGGTGAAATGAATAAGTAAACATAAACAAATAAAAGCATTGTGCTTTCTGTTAAACTGTAAGGCATAATAATCCAAGGATTTCTTCCCCCCTCAGATACTGGGAGACCATGGCATTTTTAGAGATTCTTTTCATTATGTAGTTTTGTTACCGATCATCATCCACTGTCAGCAGGGCATCATATTCCCATATAAAAAAAGCAAGTCAATTTGTAGACTTAAAATTGATAATTTAGATATACAGAGAAACCCACGTTCCTTTTCCCATGTTGTAACTGCGATTATTTTCTCTCGACTGTACGGCTTGAAACTTTCATGCTGGTAAAGGTTCTTGAAATGGTGGTTATGGAGATTCCTGGACTTCTATTTTTTTCAACGTACACACTGCTTGTTTTATTTTGGGCAGAGATATACCATCAGGTAATTTGTTATTATGGTTATTCTTTAATCTGAACAATATTATATTACATATTATATCAATTCTACGCAAGATTCATCATTGGCAATCCATATTGGTGATTATTTTTCTTTCAGGCACGAAGTCTTCCTATTCGTAAGCTGAAGCCTACTTACTGTATCATCAACGGAGTTATGTACATTATACAGGTGAAGTAAAAGGTGTCAGCCAAAAGTTGTCACTTGTCAGTACTATATGAAACACAGAATGCACTGATTTGGTCGATTTGTTTACATTCAGCTTTATTCAATTATTTTATTTGTCATCGTGTTTTAGATCTGCATTTGGATTATTGTGATGTTAGACCAATCTCCTGGTGCAGTTATAGCTGCCAAGCTCTTCTTTTCAGGTTGCAGCTCGAAACCTGCATTCTCTCTTACATCTAAAGCAAATACTATATTTTATTTACATTAGAAATGTGATGTATAATCGATGTCCATTTCAACTGGAACCTTTTGGCTTCCACATTCTAGTTTATGGAGGCATAGTAATTTTTTTCTTTATTATTTCCAGTGGTGGCATTTTCTGCTGCAGTGGGTTTCCTGATATATGGTGGGAGGTAAAAAACGAGTATGAATTCAGGAGCTGTGGTTAATTATGTTCCACTCTTAACAATTACTCTCTTAACAGGCTATTTGTCATGCTGAGGCAGTTCCCTATTGAATCTAGAGGACGCCAAAAAAAGTTGTATGAGGTAGGTTTCTTTATGTGTTTTACACAGGATTAGAAACGCTTAAAGCAATAGATTTTGTGAAAGCTGTGTATTTTACAAATTTACCCTGCTCAATAATATCATTGTATTAGAAATCCGTTGTGAAATCTTTGTATTTCAAGATTTCATAGCTCATTTTGTATTCAATTAGAGAAGTCTATCCCGATTAGAATGATCAAAAGATATTTCAAATGCTACGCTGCTGTTCCATTATTCAGTTTCAATCAGGGTTTGGTTGAGAAATTGGAATGCGATTAGCTTTTTAAACATCAATGACATAATTGATGAATGTGTATATTTCAAGGTTCAATGATGAGTTTAACCTCTTAAAAGATTTAAGTTTTAATGAAGCTCATGTTGATTTCAAATTATTAACTACTATGGGTTGGTCTCATGGTCAATATGGTCATGTGGTCTATGTAAATATTGAAGGGCTTGGAGGGAAGAGTTCGAATCATGGTGACCACCTACTTTGAATATAATATTTTATGAGCTATCGTGGCAACAAATGTAATAGAGTCTGTGATTATCCCGTGACAATGAAGCTGACTCAAGCACTCATGTATATAAAAAAATTCTTATTTTTTTTCTTATCTTCGCAGGTTGGTTTTGTGACATCAATTTGTTTTAGCTGTTTCTCTATACGATGTTTGGTGGTGAGTTTAGGGTTACAGTAATCTTGATCAACGTTACAGTAATCTTGATCAACATTCTTTAAGTGACAATATATATGCATATTTGTTCACCTTGTAGCTTGCTCTCTCTGCATTTGACAAGGATGCAGACCTTGACGTCCTAGATCATCCCATTCTTAACCTGATATACTACCTGGCAAGTTTTCAATCCCTAGTTTATATTCTAATATTTTATCTACAATGCATAGATTACCCTTTTTTAGGTAGAAACTGTGAGTAAAATATTTTGCCTTAAATATTTAATTGTCCTTTCAATGTGCGAGGTTGCCTTTACGAATTATTATGACAGCACGAACTCGGCTTTTATTCTCCAGTTTCGGCTAGTAAGATTATTGATTGAGTGATAAAAAGTTGCTCGTGGGAGAAGTAGATGAAGGGGGTTTGGTTAAGTGGGAGGTGGTGGTAAAGCCCGTGGAGATAGGTAGATTGGGGCTTCGGAACTTGGATTACATAACAAGGATCTTCTGGCTAAGTGATTGTAGTAGTCCTCCATGGAGCTGGTTGTCGTAGTCCTTCATGGAGTACAAAGTTAGCTTGAGTAGGAATGCACCTTTTTGATTGGGTTGCAAGTGGTAGTTTTAAGAGCCCCAGTAAGAACTTTTGAGAACCTATTGCCTCTAGTTCTCTTTTGTTTCTCAGGTTATTATTAGATGCTCCATTGGTGAAGCTCGAAAGTTTATTTTGGGAAGACTGTTTCTACGCTTATATCATCTCCTGCGTTAGAGGTTGCGTTCAATGAATTTGGTTTTTCCTTCCTTAGATCCCCCTTTCGTCGTTTCCTTTGGTTTTTGTTGCCCTCTTTTTGAGGAAAGAGGCAATAGATATGGCGTGTCTTCTTTCCCTTCATAATCAGCTTCTTTCCCTTCATGATCAGCATGGGTAACCACTAGGATTTTGACTCCTGATTCTTCTAGAGGCTTCTTTTGTAGTTCTTTTTTCCCATATGGTTTGCCCGTCCCTGTTCAAGCTGCCTCACTTTTTCCTCTTTGAAAGGTTACGATCTCAACGAATGTCAGATTTTTTGTGTGGCATGTTTTACGTTACACTATGGATCATGCTGCATAACACTCTTCCTTTGTGTTGTACCCACGATAGTGCATTCTTTGAAGTGGCAAGAGGAGGACCTCCAACACTTCATGTGGGGTTTACAGATTGCTTATTTTCTCATGAGCTAGTTGACAAGGTCATTTGGTTTATACTCGTCTTAAAGTAGAGGTTGTTACTCTATGATCGAGGAGGTGCTTTTGGGTTCATTGTTCAGTAGAAATCCAAAGTTTTTGTAGCCCGCTAGTTTCTTTGCTGTTTTGTGGTGAAAAGATCAACCTCTGGCTAAGTTTAATGCCTCATGATGGGGGCGGTTATTAGGCCTTTTCATAATTACGATCTTCATTTGATTTTGTTGGATTGAGGTTCCATTCTTAACCCAGTTTTTGGACTCCCTTTTTGTTGCGTTCTTTGGCTGCCTATTGTAATAGTACGAGCACCAAACTCTCCCTCGTCTTCTCTTGTGCTTCAATGTGGGTTCCAAAACATTCTTCAAAATGAGTCCAAATTCAGTCAAACTGAATCACGTGATGATTAAGCTCCACAAGATAAAAATTGTTGGCGAATTGCTCATACGCAACTAGAGTACTTTTGTGGGGTTCAGTTTTCTTGTAACTTATCCATTGAAGTTGAGCAAACCTTTCATTTTCGTTTTCTAATTTATTTACTTCTAGTTGTGTAGAATTCTAATGAATTCGATGCGTATGTTTCTGCAGTTGGTAGAGATTGTTCCTTCAGCATTGGTTCTATTTATACTGAGGAAACTTCCTCCGAGGCGTATATCCGATCGGTATCATCCCATCGAATGAAGCTCTCGACAATTTCTGGTCAGCAGAACTTTCCATTCTAACTATGCATCTACTTTGTGCAGATGACGTTTTGATCTTAGGACTTCGATTATAGAGATTTCTGTTTTTTCTCTGTTTGGCTAGCCTTCTAATTTAATCCAAAAGTGGTTCCATAAGCTAAAAACAATATCCACCCAAAATATTACATCTTTCAACGTGCATGCAGCTGCAGTTGATAGCGTTTATTCCATCAGCATTGGTTCTTTATACTGAGAAAACTTCCTCCAAGGCATGTACCTGGTCGGTCCGTTTTCGCCCCATCGAATGAAAGATCTCGACAGTTTCTGGCAGCCGAACTTTCCATTCGAACTGTGTATTTACCGATACACCCTACTGAATGAAGCTCTCAACAATTTCTGGTCAGCAGAACTCTCCATTTTTAATTGTGCATTTAATTTTTGTAGACGTTTGTTCTTTAGGACTTCCATTGCTGTTTTCTTTTACTTTCCCCCATTCTTTTGTTGGTCTGTTTTGGCTGCTGCATTTACCATACACATTTTGTGTCGCTTCTAATTTAATATACCTATTTGTTTCACCTAGAAAAGAGAAGTATGCCTAAAAGAATAC CGGCATTAATGGCGAAGAAAGCTTCTCCCCTGCTCCATTTCGTGCGGCATTAACCAAGAACAAGAAGGCTTCTCCTTCTGCGATTTTCTTTTTTTTCCGTTTTTTGAAGCTCTAATGACGAGGGCTTTGGCGACCGGCTTGGCGGTTGAGGGATTGGAATGGTGGAATGGAATTGATGAATCGGAGCAATGGCAGAAGGGGATTTATTCCGCCTTGTCCTCCTCTTATGGCCTCCTATCGATCATTGCCTTAGTTCAACTTATTCGGATTCAAATAAGAGTGCCAGAATTCGAGTGGACAACACAAAAGGGGTTCCATTTGATGAATTTCATTGTAAATGGATTGAGGGCTATTATCTTTGGGCTTTATAAGAGTGTCTTCCTCATTAGACCGAAGGTTCTTGAAATGGTGGTTATGGAGATTCCTGGACTTCTATTTTTTTCAACGTACACACTGCTTGTTTTATTTTGGGCAGAGATATACCATCAGGCACGAAGTCTTCCTATTCGTAAGCTGAAGCCTACTTACTGTATCATCAACGGAGTTATGTACATTATACAGATCTGCATTTGGATTATTGTGATGTTAGACCAATCTCCTGGTGCAGTTATAGCTGCCAAGCTCTTCTTTTCAGTGGTGGCATTTTCTGCTGCAGTGGGTTTCCTGATATATGGTGGGAGGCTATTTGTCATGCTGAGGCAGTTCCCTATTGAATCTAGAGGACGCCAAAAAAAGTTGTATGAGGTTGGTTTTGTGACATCAATTTGTTTTAGCTGTTTCTCTATACGATGTTTGGTGCTTGCTCTCTCTGCATTTGACAAGGATGCAGACCTTGACGTCCTAGATCATCCCATTCTTAACCTGATATACTACCTGTTGGTAGAGATTGTTCCTTCAGCATTGGTTCTATTTATACTGAGGAAACTTCCTCCGAGGCGTATATCCGATCGGTATCATCCCATCGAATGAAGCTCTCGACAATTTCTGCTGCAGTTGATAGCGTTTATTCCATCAGCATTGGTTCTTTATACTGAGAAAACTTCCTCCAAGGCATGTACCTGGTCGGTCCGTTTTCGCCCCATCGAATGAAAGATCTCGACAGTTTCTGGCAGCCGAACTTTCCATTCGAACTGTGTATTTACCGATACACCCTACTGAATGAAGCTCTCAACAATTTCTGGTCAGCAGAACTCTCCATTTTTAATTGTGCATTTAATTTTTGTAGACGTTTGTTCTTTAGGACTTCCATTGCTGTTTTCTTTTACTTTCCCCCATTCTTTTGTTGGTCTGTTTTGGCTGCTGCATTTACCATACACATTTTGTGTCGCTTCTAATTTAATATACCTATTTGTTTCACCTAGAAAAGAGAAGTATGCCTAAAAGAATAC ATGACGAGGGCTTTGGCGACCGGCTTGGCGGTTGAGGGATTGGAATGGTGGAATGGAATTGATGAATCGGAGCAATGGCAGAAGGGGATTTATTCCGCCTTGTCCTCCTCTTATGGCCTCCTATCGATCATTGCCTTAGTTCAACTTATTCGGATTCAAATAAGAGTGCCAGAATTCGAGTGGACAACACAAAAGGGGTTCCATTTGATGAATTTCATTGTAAATGGATTGAGGGCTATTATCTTTGGGCTTTATAAGAGTGTCTTCCTCATTAGACCGAAGGTTCTTGAAATGGTGGTTATGGAGATTCCTGGACTTCTATTTTTTTCAACGTACACACTGCTTGTTTTATTTTGGGCAGAGATATACCATCAGGCACGAAGTCTTCCTATTCGTAAGCTGAAGCCTACTTACTGTATCATCAACGGAGTTATGTACATTATACAGATCTGCATTTGGATTATTGTGATGTTAGACCAATCTCCTGGTGCAGTTATAGCTGCCAAGCTCTTCTTTTCAGTGGTGGCATTTTCTGCTGCAGTGGGTTTCCTGATATATGGTGGGAGGCTATTTGTCATGCTGAGGCAGTTCCCTATTGAATCTAGAGGACGCCAAAAAAAGTTGTATGAGGTTGGTTTTGTGACATCAATTTGTTTTAGCTGTTTCTCTATACGATGTTTGGTGCTTGCTCTCTCTGCATTTGACAAGGATGCAGACCTTGACGTCCTAGATCATCCCATTCTTAACCTGATATACTACCTGTTGGTAGAGATTGTTCCTTCAGCATTGGTTCTATTTATACTGAGGAAACTTCCTCCGAGGCGTATATCCGATCGGTATCATCCCATCGAATGA MTRALATGLAVEGLEWWNGIDESEQWQKGIYSALSSSYGLLSIIALVQLIRIQIRVPEFEWTTQKGFHLMNFIVNGLRAIIFGLYKSVFLIRPKVLEMVVMEIPGLLFFSTYTLLVLFWAEIYHQARSLPIRKLKPTYCIINGVMYIIQICIWIIVMLDQSPGAVIAAKLFFSVVAFSAAVGFLIYGGRLFVMLRQFPIESRGRQKKLYEVGFVTSICFSCFSIRCLVLALSAFDKDADLDVLDHPILNLIYYLLVEIVPSALVLFILRKLPPRRISDRYHPIE Homology
BLAST of CmoCh19G002730 vs. ExPASy Swiss-Prot
Match: Q402F4 (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 SV=1) HSP 1 Score: 371.3 bits (952), Expect = 9.7e-102 Identity = 177/268 (66.04%), Postives = 224/268 (83.58%), Query Frame = 0
BLAST of CmoCh19G002730 vs. ExPASy Swiss-Prot
Match: Q9FEG2 (Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=1 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 2.6e-99 Identity = 173/269 (64.31%), Postives = 223/269 (82.90%), Query Frame = 0
BLAST of CmoCh19G002730 vs. ExPASy Swiss-Prot
Match: Q402F3 (Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 3.2e-89 Identity = 157/280 (56.07%), Postives = 220/280 (78.57%), Query Frame = 0
BLAST of CmoCh19G002730 vs. ExPASy Swiss-Prot
Match: Q9ZUM2 (Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=1 SV=2) HSP 1 Score: 322.8 bits (826), Expect = 3.9e-87 Identity = 149/272 (54.78%), Postives = 218/272 (80.15%), Query Frame = 0
BLAST of CmoCh19G002730 vs. ExPASy Swiss-Prot
Match: Q948R8 (Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 1.5e-86 Identity = 152/273 (55.68%), Postives = 215/273 (78.75%), Query Frame = 0
BLAST of CmoCh19G002730 vs. ExPASy TrEMBL
Match: A0A6J1HJF7 (tobamovirus multiplication protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111464100 PE=3 SV=1) HSP 1 Score: 553.5 bits (1425), Expect = 5.1e-154 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
BLAST of CmoCh19G002730 vs. ExPASy TrEMBL
Match: A0A6J1HVA7 (tobamovirus multiplication protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467004 PE=3 SV=1) HSP 1 Score: 548.5 bits (1412), Expect = 1.6e-152 Identity = 280/284 (98.59%), Postives = 282/284 (99.30%), Query Frame = 0
BLAST of CmoCh19G002730 vs. ExPASy TrEMBL
Match: A0A6J1JNL1 (tobamovirus multiplication protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486099 PE=3 SV=1) HSP 1 Score: 491.9 bits (1265), Expect = 1.8e-135 Identity = 246/284 (86.62%), Postives = 264/284 (92.96%), Query Frame = 0
BLAST of CmoCh19G002730 vs. ExPASy TrEMBL
Match: A0A0A0K5Z8 (DUF1084 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062880 PE=3 SV=1) HSP 1 Score: 491.1 bits (1263), Expect = 3.1e-135 Identity = 249/285 (87.37%), Postives = 267/285 (93.68%), Query Frame = 0
BLAST of CmoCh19G002730 vs. ExPASy TrEMBL
Match: A0A6J1EME9 (tobamovirus multiplication protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434684 PE=3 SV=1) HSP 1 Score: 489.2 bits (1258), Expect = 1.2e-134 Identity = 244/284 (85.92%), Postives = 263/284 (92.61%), Query Frame = 0
BLAST of CmoCh19G002730 vs. TAIR 10
Match: AT4G21790.1 (tobamovirus multiplication 1 ) HSP 1 Score: 363.2 bits (931), Expect = 1.9e-100 Identity = 173/269 (64.31%), Postives = 223/269 (82.90%), Query Frame = 0
BLAST of CmoCh19G002730 vs. TAIR 10
Match: AT2G02180.1 (tobamovirus multiplication protein 3 ) HSP 1 Score: 322.8 bits (826), Expect = 2.8e-88 Identity = 149/272 (54.78%), Postives = 218/272 (80.15%), Query Frame = 0
BLAST of CmoCh19G002730 vs. TAIR 10
Match: AT1G14530.1 (Protein of unknown function (DUF1084) ) HSP 1 Score: 320.9 bits (821), Expect = 1.1e-87 Identity = 152/273 (55.68%), Postives = 215/273 (78.75%), Query Frame = 0
BLAST of CmoCh19G002730 vs. TAIR 10
Match: AT1G14530.2 (Protein of unknown function (DUF1084) ) HSP 1 Score: 320.9 bits (821), Expect = 1.1e-87 Identity = 152/273 (55.68%), Postives = 215/273 (78.75%), Query Frame = 0
BLAST of CmoCh19G002730 vs. TAIR 10
Match: AT3G59090.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). ) HSP 1 Score: 62.0 bits (149), Expect = 8.9e-10 Identity = 73/292 (25.00%), Postives = 116/292 (39.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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