CmoCh19G002410 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G002410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTPR_REGION domain-containing protein
LocationCmo_Chr19: 1706439 .. 1707762 (-)
RNA-Seq ExpressionCmoCh19G002410
SyntenyCmoCh19G002410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGAAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAACAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATATCGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGCGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTAATCGAAGTCTAGAATTATCAAATTGAAAGTCTGCTTTGATCTGAAATCCTGAAATCCTGAAATCTAATGGAATATCACACTTTAATTTCTTTGATTTGATTTGATTGATGATTTAAAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGGAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGGTAATTTTCGATATCTGGATCGAGCAGTTTAGCCCTAATTTCATGAACTGGAAGACTCTGAATGTTTGAATTTGTTTGTGAAGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCAGCTCTGGTTGCGGCGTTTTAATGGAAGAAATTGGTTTGAAGGAGGTTTCGCGGATATAGGAGAGGAAGAATTGAGGGAGAAGTGGCACGTGATTTGTGGACGTGCCATTTCAGGAGGAAATAAATTGCACGTGACTTGTTGGTGTAATGTAAAGTCCCATAATAATAAAAAAAAATAACTCTGATTTCTATTTTAAAATATTCTATTTATTAGGAAAATTTCGACGTCAAATCCTAAATTACCACCAAATATTTTAGTTGGGG

mRNA sequence

AACGAAAAACCCAAAAAGGGAAAACGAAAGAAAACTCTGCCATTTCAAAACCTTCGCAAATTGCAGCTATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAACAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATATCGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGCGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGGAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCAGCTCTGGTTGCGGCGTTTTAATGGAAGAAATTGGTTTGAAGGAGGTTTCGCGGATATAGGAGAGGAAGAATTGAGGGAGAAGTGGCACGTGATTTGTGGACGTGCCATTTCAGGAGGAAATAAATTGCACGTGACTTGTTGGTGTAATGTAAAGTCCCATAATAATAAAAAAAAATAACTCTGATTTCTATTTTAAAATATTCTATTTATTAGGAAAATTTCGACGTCAAATCCTAAATTACCACCAAATATTTTAGTTGGGG

Coding sequence (CDS)

ATGGAATCCGCTCTCATCAGAACCGTTTCCGTTCCCGTCCTCTCGTCGGCCGTCGCCGCTTCTTCGTCCTTCTCCAATTACAAACCGTTGTATGGAGCTCTCTCCGGCCAGAACAGTTCCATTTCATCTCCGAAGATCTCTCTGCATTTTGAGATCAATCATCGCAGAGGAAAGAACTGGAGTGGTATTCGAAGAGCGGCATCGGAGAGCGACATATCGCGATCGCTCCACGAGGTTTCGAGTCCGTATGATCAATTCGGTGGATTCAGATCTCGATATTGGTCCGTTCCTTCCGAAATACCAGAGGATGAGTTTCTGAACCAGGATGAATTTCACCGTGATTCATTTGCGGACACTGAATTTCTAAATTCCGGAATCGTAAGCGGCGATGGCGGTGATTTTGTAGCAGATAAATTTTCGGACGGAAGTAGTGAATCTAGTAAGATCAGAGCGTACTACGAAGAGATGCTGAAATCGAACCCTAGCGACGCTCTGATATTGAGAAACTACGGAAAATTCTTACACGAGGTTGAGAAAGATAGTAAACGAGCAGAGGAATGCTACAGCAGAGCAATACTGGCGAGTCCAAGAGACGGAGAATTGCTGGCTCTATACGGGAAATTAGTATGGGATACTCAAAGAGACAAGCGAAGAGCTCAATATTACTTCGATCGTGCCGTGTGTGCCTCCCCTAACGACTGTTTGGTGATAGGATATTACGCTCATTTCTTGTGGCTGGTAGAAGACGATGAGGAGGAAGCGACGGCGGTGGCTCCGGCGCCGGCGCCAGCTCTGGTTGCGGCGTTTTAA

Protein sequence

MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNWSGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEEATAVAPAPAPALVAAF
Homology
BLAST of CmoCh19G002410 vs. ExPASy TrEMBL
Match: A0A6J1HIV3 (uncharacterized protein LOC111463957 OS=Cucurbita moschata OX=3662 GN=LOC111463957 PE=4 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 8.8e-148
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0

Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
           SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120

Query: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKD 180
           FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKD
Sbjct: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKD 180

Query: 181 SKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYY 240
           SKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYY
Sbjct: 181 SKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYY 240

Query: 241 AHFLWLVEDDEEEATAVAPAPAPALVAAF 270
           AHFLWLVEDDEEEATAVAPAPAPALVAAF
Sbjct: 241 AHFLWLVEDDEEEATAVAPAPAPALVAAF 269

BLAST of CmoCh19G002410 vs. ExPASy TrEMBL
Match: A0A6J1HRN2 (uncharacterized protein LOC111466874 OS=Cucurbita maxima OX=3661 GN=LOC111466874 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.2e-142
Identity = 262/270 (97.04%), Postives = 265/270 (98.15%), Query Frame = 0

Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120
           SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPS IPE+EFLNQDEFHRDS ADTE
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120

Query: 121 FLNSGIVSGDGGDFVA-DKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEK 180
           FLNSGIVSGDGGDFVA DKF+DGSSESSKIRAYYEEMLKSNPSD LILRNYGKFLHEVEK
Sbjct: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180

Query: 181 DSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240
           D+KRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY
Sbjct: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240

Query: 241 YAHFLWLVEDDEEEATAVAPAPAPALVAAF 270
           YAHFLWLVEDDEEEATAVA APAPALVAAF
Sbjct: 241 YAHFLWLVEDDEEEATAVALAPAPALVAAF 270

BLAST of CmoCh19G002410 vs. ExPASy TrEMBL
Match: A0A6J1EX26 (uncharacterized protein LOC111437316 OS=Cucurbita moschata OX=3662 GN=LOC111437316 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 7.8e-96
Identity = 191/273 (69.96%), Postives = 225/273 (82.42%), Query Frame = 0

Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL+RTVS+PV+  +  ASSSFSNY+PL+G  +G  SS+SSPKISLHFE+N+ RG+N 
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGF--RSRYWSVPSEIPEDEFLNQDEFHRDSFA- 120
           SGIRRA+SESDISRSLHEVS+PYDQFGG   RSR  S  SEIPE+EFLNQDEF  DS   
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEV 180
           D+  L+SGI   DG +F  D F DGS++ +KI AYYEE+LK NP+DAL+LRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

Query: 181 EKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVI 240
           EKD  R+EECYSRAILA+P DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLVI
Sbjct: 181 EKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVI 240

Query: 241 GYYAHFLWLVEDD-EEEATAVAPAPAPALVAAF 270
           GYYA+FLW +EDD EEEA  V PA   A+VAAF
Sbjct: 241 GYYAYFLWQIEDDEEEEAAEVWPA---AMVAAF 270

BLAST of CmoCh19G002410 vs. ExPASy TrEMBL
Match: A0A6J1K5B2 (uncharacterized protein LOC111491305 OS=Cucurbita maxima OX=3661 GN=LOC111491305 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.2e-93
Identity = 189/273 (69.23%), Postives = 222/273 (81.32%), Query Frame = 0

Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL RTVS+PV+S +  ASSSFSNY+PL+G  +G  SS+SSPKISL FE+N+ RG+N 
Sbjct: 1   MKSALFRTVSIPVISPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLLFEMNNPRGRNS 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGF--RSRYWSVPSEIPEDEFLNQDEFHRDSF-A 120
           SGIRR +SESDISRSLHEVS+PYDQFGG   RSR  S  SEIPE+EFLNQDEF  DS   
Sbjct: 61  SGIRRVSSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMEE 120

Query: 121 DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEV 180
           D+  L+SGI   DG +F  D F DGS++ +KI AYYEE+LK NP+DAL+LRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

Query: 181 EKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVI 240
           EKD  R+EECYSRAILA+P DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLVI
Sbjct: 181 EKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVI 240

Query: 241 GYYAHFLWLVEDDEE-EATAVAPAPAPALVAAF 270
           G YA+FLW +EDDEE EA  V PA   A+VAAF
Sbjct: 241 GCYAYFLWQIEDDEEQEAAEVWPA---AMVAAF 270

BLAST of CmoCh19G002410 vs. ExPASy TrEMBL
Match: A0A6J1DU99 (uncharacterized protein LOC111023531 OS=Momordica charantia OX=3673 GN=LOC111023531 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.7e-80
Identity = 182/303 (60.07%), Postives = 208/303 (68.65%), Query Frame = 0

Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60
           M+SAL RT SVPV+S A A S SFSNY+P +       S +SSPKISLHFEINHRRG   
Sbjct: 1   MKSALARTGSVPVISPAGAPSPSFSNYRPFH------KSYVSSPKISLHFEINHRRGAKS 60

Query: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLN------------- 120
           SGIRRA+SESDI+RSLH++S+ YDQ GG  SR  S PS IPEDEFLN             
Sbjct: 61  SGIRRASSESDIARSLHQISNRYDQLGGVGSR--SFPSGIPEDEFLNESRDAVAEEWIIQ 120

Query: 121 --QDEFHRDSFA-----------DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYE 180
             +DEF   ++A           +  F  SGI  G GG+ V D FS GSS+ SKI AYYE
Sbjct: 121 EDEDEFDISNYAGDFSGGAISMKNAGFFGSGI--GSGGNIVTDTFSGGSSDRSKIGAYYE 180

Query: 181 EMLKSNPSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQR 240
           EMLK NPSD+L+LRNYGKFLHEVE D+ RAEE Y RAILASP DGELL+LYGKLVW+TQR
Sbjct: 181 EMLKLNPSDSLLLRNYGKFLHEVENDAVRAEEFYGRAILASPGDGELLSLYGKLVWETQR 240

Query: 241 DKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEE--------ATAVAPAPAPALV 270
           D++RA+ YFDRAV ASP+DC V+G YAHFLW VE DEEE        A   A  P  ALV
Sbjct: 241 DEQRAKSYFDRAVYASPDDCSVLGSYAHFLWEVEADEEEEEEEEEAAAAEKAEVPPAALV 293

BLAST of CmoCh19G002410 vs. TAIR 10
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 171.8 bits (434), Expect = 7.6e-43
Identity = 117/295 (39.66%), Postives = 161/295 (54.58%), Query Frame = 0

Query: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPL-----YGALSGQNSSISSPKISLHFEINHR 60
           M+S L+RT S+PVL + + +  S     P+       +LS      +  KIS+  + N  
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSVESLSSYGERFAGGKISIEVKAN-- 60

Query: 61  RGKNWSGIRRAASESDISRS---LHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFH 120
                 G+RR  SESD+ RS   L  V S               P+ IPED+   ++E  
Sbjct: 61  -----VGMRRVLSESDVIRSERMLKRVGSK------------PSPARIPEDDEAGEEEIR 120

Query: 121 RDSFAD--------------TEFLNSGIVSGDG-GDFVADKFSDGSSESSKIRAYYEEML 180
              FAD                F   G+  G G      +    G  + SKI  YY EML
Sbjct: 121 ---FADGWGSMISGGLPVEEKCFTGGGVGGGSGYSGGYGNGGGGGYEDKSKIGDYYREML 180

Query: 181 KSNPSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKR 240
           +SNP+++L+L NYGKFL+EVEKD++ AEE Y RAIL +P DGE L++YG+L+W+T+RD++
Sbjct: 181 RSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEK 240

Query: 241 RAQYYFDRAVCASPNDCLVIGYYAHFLWLVE----DDEEEATAVAPAPAPALVAA 269
           RAQ YFD+AV ASPNDC+V+G YA F+W  E    DDEEE      A +P +V+A
Sbjct: 241 RAQGYFDQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEEEEWMAASPLMVSA 273

BLAST of CmoCh19G002410 vs. TAIR 10
Match: AT5G20190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 5.8e-27
Identity = 89/273 (32.60%), Postives = 132/273 (48.35%), Query Frame = 0

Query: 5   LIRTVSVPVLSSAVAASS-------------SFSNYKPLYGALSGQNSSISSPKISLHFE 64
           L+R+ S P+L+S V  SS                 ++ +   LS  +SS     +S+H  
Sbjct: 2   LLRSASTPLLNSLVHVSSPRDSPIETVESVHQIQRHRSI--TLSASSSSCCYSPMSVHSS 61

Query: 65  INHRRGKNWSGIRRAASESDISRSLHEVSSPYDQF--GGFRSRYWSVPSEIPED---EFL 124
            +  R      ++R AS+SD+ R L     P  +F  GG      ++  ++ E      +
Sbjct: 62  DDSSR-----RMKRTASDSDL-RHLTSTKPPVSKFLSGG------ALMEDVDEGIGFGLI 121

Query: 125 NQDEFHRDSFA---DTEFL---NSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSN 184
               +   S+A   DTE       G+  G G      +   G         +Y +M+++N
Sbjct: 122 RTSSYDGISWALDEDTEVAGGGGGGMFHGGGKGRSGGRSDGGDGGDDNTDVHYRKMIEAN 181

Query: 185 PSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQ 244
           P + + L NY KFL EV KD  +AEE   RAIL SP DG +LA+Y +LVW   +D  RA+
Sbjct: 182 PGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWKIHKDSSRAE 241

Query: 245 YYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEE 254
            YF++AV A+P DC V   YA FLW  E++EEE
Sbjct: 242 NYFNQAVAAAPEDCYVQASYARFLWDAEEEEEE 260

BLAST of CmoCh19G002410 vs. TAIR 10
Match: AT4G32340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-26
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 0

Query: 123 NSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKDSK 182
           ++G   G GGD        G      +  YYEEM++  P D L+L NY +FL EV+ D +
Sbjct: 87  SNGGFGGRGGDGAG---GGGGGGGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGR 146

Query: 183 RAEECYSRAILA-SPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYYA 242
           +AEE   RA+L+ S RDGELL++YG L+W    D  RAQ Y+D+AV +SP+DC V+  YA
Sbjct: 147 KAEEYCERAMLSESGRDGELLSMYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYA 206

Query: 243 HFLWLVEDDEEE 254
            FLW  E++ EE
Sbjct: 207 RFLWDAEEEVEE 215

BLAST of CmoCh19G002410 vs. TAIR 10
Match: AT1G80130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-24
Identity = 55/124 (44.35%), Postives = 74/124 (59.68%), Query Frame = 0

Query: 130 DGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKDSKRAEECYS 189
           +GG  V     DG         YY EM+ SNP ++L+  NY KFL EV+ D K+AEE   
Sbjct: 146 NGGGGVGGSGVDGGRSEDATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCE 205

Query: 190 RAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVED 249
           RAIL +  DG +L+LY  L+    +D++RA  Y+ +AV  SP DC V   YA FLW V++
Sbjct: 206 RAILGNTNDGNVLSLYADLILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDE 265

Query: 250 DEEE 254
           DEE+
Sbjct: 266 DEED 269

BLAST of CmoCh19G002410 vs. TAIR 10
Match: AT1G04530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 7.6e-19
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 0

Query: 152 YYEEMLKSNPSDALILRNYGKFLHEVEKDSKRAEECYSRAILASPRDGELLALYGKLVWD 211
           YY+ ML+  P   L+L+NY KFL E + D   AEE Y +  +  P DG  LA YG+LV  
Sbjct: 124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 183

Query: 212 TQRDKRRAQYYFDRAVCASPNDCLVIGYYAHFLWLVEDDEEE 254
             +D+ +A  YF+RAV ASP+D +V+  YA FLW +  D+++
Sbjct: 184 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADDDD 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HIV38.8e-148100.00uncharacterized protein LOC111463957 OS=Cucurbita moschata OX=3662 GN=LOC1114639... [more]
A0A6J1HRN27.2e-14297.04uncharacterized protein LOC111466874 OS=Cucurbita maxima OX=3661 GN=LOC111466874... [more]
A0A6J1EX267.8e-9669.96uncharacterized protein LOC111437316 OS=Cucurbita moschata OX=3662 GN=LOC1114373... [more]
A0A6J1K5B21.2e-9369.23uncharacterized protein LOC111491305 OS=Cucurbita maxima OX=3661 GN=LOC111491305... [more]
A0A6J1DU992.7e-8060.07uncharacterized protein LOC111023531 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
AT4G17940.17.6e-4339.66Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G20190.15.8e-2732.60Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G32340.14.9e-2645.45Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G80130.11.6e-2444.35Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G04530.17.6e-1944.12Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 141..244
e-value: 9.0E-12
score: 46.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 151..252
NoneNo IPR availablePANTHERPTHR26312:SF123TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEINcoord: 1..256
NoneNo IPR availablePANTHERPTHR26312TETRATRICOPEPTIDE REPEAT PROTEIN 5coord: 1..256

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G002410.1CmoCh19G002410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding