CmoCh19G001890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G001890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	wound-induced basic protein-like
Location	Cmo_Chr19: 1223826 .. 1226208 (+)
RNA-Seq Expression	CmoCh19G001890
Synteny	CmoCh19G001890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTATTTAAACGCTCGTTTACCGCCTATTTCTCTAGATACCGATATTCATACAGACGAAAGTTGCAGATTTGGAGGGCGGCGACAGACTAGGGTTTTTGCTTGGAATATTGTTGCTGTTTCTCCCAATTGCTTCACGATGATCTACGACGTCAACTCTCATCTGTTCCGCTCTTTCCTCAGCCAGAAGGGAGGAGGTGCCTACGACAAAAGGTATGCGATGCTCTTACTTTCACCATGTTTACAATTAGAAACGTATTTGTGGAGATATATATATATATATATATATATATATTTTTTTTTTTGTAAAGTAGTTCGTTAACTTGATTTTTTCTCTTTTCTGTAACTGTCTATTTGTTTGATTTTGGATTCTAGGTTGTTTTGATTTTCGTTTACTTTATTTTGCTTTTGATTTGGCTCTGTAAGTTGTCTTATTTGTCTGCTATTGGCTTGTTTGATTGTGCTGCCTTTTGGCTTTCTTTAGATGTTAGTAAATTGATCTAGAGGCTCTAGAAGTTTAGGTTGTTGAATGGATATCGAAATTTGTTTGAAATTGATCTTGCGAACGGAACTAACAGCGTTTGAATGCTCTTAGAATTGGTAGCTTTTATTTGGCCATTTAGTTCTCTATTCGTTCTTCGTCTTGCTTTTATTATCGATGTTTGCTCTCGAATCTTCAAAGATTTCTGTACTTCAAGCGTACTTGTTGCTTGCTAATGAATAAAAGCATGAAGCATTATTTAAAAAAAACATTCTATTTTGAAGCGTCATGCAGATTTAATTGCTATGAATGATCCAATAGAGTTTTGACGGGCGAACTATACCAAACTTTTACGGAAAGCTTCTTAGCATAGTTTATTTACTTCCGTTCTAGATTCCTTGAGACTTTTGGATTTGCCTGTTTTTAACTCGGTACATAGTTACCGACAATAGGTTTTGCAATTTCTTTTTAAACTGTATGTTCTTTAAGATTTTCAAGTGTAAATTAAACTTTCTTTTGGAATCTTCTGTTGCATGAAACAACAGACATTTAACAGCACCGCCTTTAGCATTTAGCAATATTTTTCTTGAATTAATTTTAGTGGCTGCTTTTATCTTGGTGTAAATGTTACTACACTGCCTTTAGCAATTTTAATCTCAATGATCTTTTGGTCCTTTTTTTTGGTAATTTCTTTAGCCTGGAGCCTAGGTTTCCTCCCTTTTCGTTATATTTCATACTACCAATCTGTTTCATATTAAAAAAAGGAAAAAAAAAAAAAAGGAAGAGAGAGAGCAAAAAAAGTGCATATATTAATCCTTTGTTTTATTTAGAAAAAAGAAAAAAGCGCATGACCGACTTAACTATCTTTATTTTAGATGTTTTGGATCTGGCCTGGCTTACCGTTTATTCTATGCGATATTAATTCCATGGTTTAAAGATTATGATTCAACTGTAGTGAATATCTTAATAGATGAAATCTAAAGGTTAAATATTGTACCCTTCATTCCTTTTGTTTTACTCTCTCATTATTCAACTTCCATAATATCCATAATTGTTGTTGCTAATGATTAAGGTAGCATTTAAAGGGGGAAATTAAAAGTAGTAATAACATAATATATTCTGTATTCGTTACTCAATTCTCTTCTCTGTTCTGTTTGTGAATATTTTTATAATTACTCACCGAGCCACATTTTAATTAATTGGAGTCCCTTGTGGGCTATTTAGGCCTCTCCTTTTTATATGACTGTATTCTTTCATTTTGTCTCAATGAAAGTTCGATTTTTACATAATACAAGAAGAATATATTTTGAATTTTGGAATGTATTTTCTCGATTTGGAATAGCTACATTGTCGTGTTATAAATGAGCATTTGTAGCCTTATCAGTTGTTTGTGATGTTTACTTCAGAAAAATTGAGGAGCAGAAGCCCAAAGAGCAAAGATTCAAGGCAAATGAGAACAAGCCTGTCATGACAGAGTAATAACAACGTGAATATGTAGGTTGTAGATCATATTGTAGTCAAGTTTGAATTGTTTCAATAGAACCAGTTTTCATATTCCTTGTATGACTTTATTAACGTTCTGCCATATGGAGGCTTTGTGCTTGCAATGAGCAAGTTTATGTCAATTCATGATTTTATAATCCAAGCATATCTTTCTTTTTATGATTTTATTTGTTGGCCAAGCCTTTTATGTCAATTTATGAGTGTTTTTGTCACTGGTAAATGCTTTGCTAGTAGTACGGTTGATGTTATGATGAAACGAAGGTTTGATATCTTTAATAATTCTTCATTGGGGTCTGGTGGATGATTGGAGAAAAGATGATAATTGGGTGGATTCATCCTTTCCATTCCTTTTTGACTTTTAATTGAACGCAGGACAAACAGGAATATAATTATATAA

mRNA sequence

ATGGAGTATTTAAACGCTCGTTTACCGCCTATTTCTCTAGATACCGATATTCATACAGACGAAAGTTGCAGATTTGGAGGGCGGCGACAGACTAGGGTTTTTGCTTGGAATATTGTTGCTGTTTCTCCCAATTGCTTCACGATGATCTACGACGTCAACTCTCATCTGTTCCGCTCTTTCCTCAGCCAGAAGGGAGGAGGTGCCTACGACAAAAGAAAAATTGAGGAGCAGAAGCCCAAAGAGCAAAGATTCAAGGCAAATGAGAACAAGCCTGTCATGACAGAGACAAACAGGAATATAATTATATAA

Coding sequence (CDS)

ATGGAGTATTTAAACGCTCGTTTACCGCCTATTTCTCTAGATACCGATATTCATACAGACGAAAGTTGCAGATTTGGAGGGCGGCGACAGACTAGGGTTTTTGCTTGGAATATTGTTGCTGTTTCTCCCAATTGCTTCACGATGATCTACGACGTCAACTCTCATCTGTTCCGCTCTTTCCTCAGCCAGAAGGGAGGAGGTGCCTACGACAAAAGAAAAATTGAGGAGCAGAAGCCCAAAGAGCAAAGATTCAAGGCAAATGAGAACAAGCCTGTCATGACAGAGACAAACAGGAATATAATTATATAA

Protein sequence

MEYLNARLPPISLDTDIHTDESCRFGGRRQTRVFAWNIVAVSPNCFTMIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTETNRNIII

Homology

[Close]

BLAST of CmoCh19G001890 vs. ExPASy Swiss-Prot
Match: Q09020 (Wound-induced basic protein OS=Phaseolus vulgaris OX=3885 GN=PR4 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 48 MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE 96
          MIYDVNS LFRSFLSQKGG + DKRK EEQKPKE R KA+ENKP+MTE
Sbjct: 1  MIYDVNSPLFRSFLSQKGGSS-DKRKTEEQKPKEHRPKASENKPIMTE 47

[Close]

BLAST of CmoCh19G001890 vs. ExPASy TrEMBL
Match: A0A6J1HKV4 (wound-induced basic protein-like OS=Cucurbita moschata OX=3662 GN=LOC111463924 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 48 MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE 96
          MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE
Sbjct: 1  MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE 48

[Close]

BLAST of CmoCh19G001890 vs. ExPASy TrEMBL
Match: A0A6J1HU85 (wound-induced basic protein-like OS=Cucurbita maxima OX=3661 GN=LOC111466900 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 48 MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE 96
          MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE
Sbjct: 1  MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE 48

[Close]

BLAST of CmoCh19G001890 vs. ExPASy TrEMBL
Match: A0A6J1E0I7 (wound-induced basic protein-like OS=Momordica charantia OX=3673 GN=LOC111026038 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.7e-14
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 48 MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE 96
          MIYDVNS LFRSFLSQKGGG  DKRKIEEQKPKEQ+FKANENKPVMTE
Sbjct: 1  MIYDVNSPLFRSFLSQKGGGDSDKRKIEEQKPKEQKFKANENKPVMTE 48

[Close]

BLAST of CmoCh19G001890 vs. ExPASy TrEMBL
Match: A0A2P5AHP9 (Wound-inducible basic OS=Parasponia andersonii OX=3476 GN=PanWU01x14_331520 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.3e-13
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 48 MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE 96
          MIYDVNSHLFRSFLSQKGG + DKRKIEEQKPKEQR KANENKPVMTE
Sbjct: 1  MIYDVNSHLFRSFLSQKGGSS-DKRKIEEQKPKEQRPKANENKPVMTE 47

[Close]

BLAST of CmoCh19G001890 vs. ExPASy TrEMBL
Match: A0A2P5CE81 (Wound-inducible basic OS=Trema orientale OX=63057 GN=TorRG33x02_288570 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.3e-13
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 48 MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE 96
          MIYDVNSHLFRSFLSQKGG + DKRKIEEQKPKEQR KANENKPVMTE
Sbjct: 1  MIYDVNSHLFRSFLSQKGGSS-DKRKIEEQKPKEQRPKANENKPVMTE 47

[Close]

BLAST of CmoCh19G001890 vs. TAIR 10
Match: AT3G07230.1 (wound-responsive protein-related )

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-10
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 48 MIYDVNSHLFRSFLSQKGGGAYDKRKIEEQKPKEQRFKANENKPVMTE 96
          MIYDVNS LFRSFLSQKG  + DKRK+E+ KP+EQ+ KA++NKPVM E
Sbjct: 1  MIYDVNSGLFRSFLSQKGSSS-DKRKMED-KPREQKPKASDNKPVMNE 46

The following BLAST results are available for this feature:

BLAST of CmoCh19G001890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09020	1.5e-12	81.25	Wound-induced basic protein OS=Phaseolus vulgaris OX=3885 GN=PR4 PE=2 SV=1	[more]

BLAST of CmoCh19G001890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKV4	2.1e-17	100.00	wound-induced basic protein-like OS=Cucurbita moschata OX=3662 GN=LOC111463924 P...	[more]
A0A6J1HU85	2.1e-17	100.00	wound-induced basic protein-like OS=Cucurbita maxima OX=3661 GN=LOC111466900 PE=...	[more]
A0A6J1E0I7	3.7e-14	91.67	wound-induced basic protein-like OS=Momordica charantia OX=3673 GN=LOC111026038 ...	[more]
A0A2P5AHP9	5.3e-13	91.67	Wound-inducible basic OS=Parasponia andersonii OX=3476 GN=PanWU01x14_331520 PE=4...	[more]
A0A2P5CE81	5.3e-13	91.67	Wound-inducible basic OS=Trema orientale OX=63057 GN=TorRG33x02_288570 PE=4 SV=1	[more]

BLAST of CmoCh19G001890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07230.1	5.5e-10	70.83	wound-responsive protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012643	Wound-inducible basic	PFAM	PF08186	Wound_ind	coord: 48..95 e-value: 6.9E-18 score: 64.8
IPR012643	Wound-inducible basic	PANTHER	PTHR36752	OS12G0405700 PROTEIN	coord: 48..98
None	No IPR available	PANTHER	PTHR36752:SF2	OS12G0405700 PROTEIN	coord: 48..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G001890.1	CmoCh19G001890.1	mRNA